Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:28:41 (16047): wrapper (7.7.26015): starting
15:28:41 (16047): wrapper: running run_atlas (--nthreads 3)
[2025-12-09 15:28:41] Arguments: --nthreads 3
[2025-12-09 15:28:41] Threads: 3
[2025-12-09 15:28:41] Checking for CVMFS
[2025-12-09 15:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 15:28:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 15:28:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 15:28:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 15:28:41] 2.9.2.0 4055997 1038 62700 153808 3 56 19193556 36864000 0 130560 0 417877 99.980 40863 4759 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-09 15:28:41] CVMFS is ok
[2025-12-09 15:28:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 15:28:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-09 15:28:41] Further information can be found at the LHC@home message board.
[2025-12-09 15:28:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 15:28:41] Checking for apptainer binary...
[2025-12-09 15:28:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 15:28:41] Running /usr/bin/apptainer --version
[2025-12-09 15:28:41] apptainer version 1.4.1-1.1
[2025-12-09 15:28:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 15:28:41] magicA246a
[2025-12-09 15:28:41] apptainer works
[2025-12-09 15:28:41] Set ATHENA_PROC_NUMBER=3
[2025-12-09 15:28:41] Set ATHENA_CORE_NUMBER=3
[2025-12-09 15:28:41] Starting ATLAS job with PandaID=6924260801
[2025-12-09 15:28:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 17:13:59]  *** The last 200 lines of the pilot log: ***
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 17:13:59] 2025-12-09 16:13:14,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 17:13:59] 2025-12-09 16:13:14,950 | INFO     | job 6924260801 has completed (purged errors)
[2025-12-09 17:13:59] 2025-12-09 16:13:14,950 | INFO     | overall cleanup function is called
[2025-12-09 17:13:59] 2025-12-09 16:13:15,956 | INFO     | --- collectZombieJob: --- 10, [26209]
[2025-12-09 17:13:59] 2025-12-09 16:13:15,956 | INFO     | zombie collector waiting for pid 26209
[2025-12-09 17:13:59] 2025-12-09 16:13:15,956 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 17:13:59] 2025-12-09 16:13:15,957 | INFO     | collected zombie processes
[2025-12-09 17:13:59] 2025-12-09 16:13:15,957 | INFO     | will attempt to kill all subprocesses of pid=26209
[2025-12-09 17:13:59] 2025-12-09 16:13:16,002 | INFO     | process IDs to be killed: [26209] (in reverse order)
[2025-12-09 17:13:59] 2025-12-09 16:13:16,026 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 17:13:59] 2025-12-09 16:13:16,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 17:13:59] 2025-12-09 16:13:16,028 | INFO     | did not find any defunct processes belonging to 26209
[2025-12-09 17:13:59] 2025-12-09 16:13:16,029 | INFO     | did not find any defunct processes belonging to 26209
[2025-12-09 17:13:59] 2025-12-09 16:13:16,029 | INFO     | ready for new job
[2025-12-09 17:13:59] 2025-12-09 16:13:16,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | ***************************************
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | ***************************************
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | 
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | architecture information:
[2025-12-09 17:13:59] 2025-12-09 16:13:16,030 | INFO     | executing command: cat /etc/os-release
[2025-12-09 17:13:59] 2025-12-09 16:13:16,039 | INFO     | cat /etc/os-release:
[2025-12-09 17:13:59] NAME="CentOS Linux"
[2025-12-09 17:13:59] VERSION="7 (Core)"
[2025-12-09 17:13:59] ID="centos"
[2025-12-09 17:13:59] ID_LIKE="rhel fedora"
[2025-12-09 17:13:59] VERSION_ID="7"
[2025-12-09 17:13:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 17:13:59] ANSI_COLOR="0;31"
[2025-12-09 17:13:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 17:13:59] HOME_URL="https://www.centos.org/"
[2025-12-09 17:13:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 17:13:59] 
[2025-12-09 17:13:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 17:13:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 17:13:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 17:13:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 17:13:59] 
[2025-12-09 17:13:59] 2025-12-09 16:13:16,039 | INFO     | ***************************************
[2025-12-09 17:13:59] 2025-12-09 16:13:16,543 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-09 17:13:59] 2025-12-09 16:13:16,554 | INFO     | sufficient remaining disk space (287039291392 B)
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | INFO     | update_server=False
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 17:13:59] 2025-12-09 16:13:16,555 | INFO     | aborting loop
[2025-12-09 17:13:59] 2025-12-09 16:13:17,493 | INFO     | all job control threads have been joined
[2025-12-09 17:13:59] 2025-12-09 16:13:17,518 | INFO     | all data control threads have been joined
[2025-12-09 17:13:59] 2025-12-09 16:13:17,556 | INFO     | [job] queue monitor thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:17,560 | INFO     | [job] retrieve thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:17,561 | INFO     | [job] job monitor thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:17,672 | INFO     | [payload] failed_post thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:17,694 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:17,996 | INFO     | all payload control threads have been joined
[2025-12-09 17:13:59] 2025-12-09 16:13:18,343 | INFO     | [data] copytool_in thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,429 | INFO     | [payload] validate_post thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,499 | INFO     | [job] control thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,524 | INFO     | [data] control thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,561 | INFO     | [data] copytool_out thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,878 | INFO     | [job] validate thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,963 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,964 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:18,999 | INFO     | [payload] control thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:19,018 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 17:13:59] 2025-12-09 16:13:23,025 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:27,463 | INFO     | job.realtimelogging is not enabled
[2025-12-09 17:13:59] 2025-12-09 16:13:28,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 17:13:59] 2025-12-09 16:13:46,121 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-12-09 17:13:59] 2025-12-09 16:13:46,476 | INFO     | PID=19769 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-09 17:13:59] 2025-12-09 16:13:46,477 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 17:13:59] 2025-12-09 16:13:46,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 17:13:59] 2025-12-09 16:13:46,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 17:13:59] 2025-12-09 16:13:53,772 | INFO     | [monitor] cgroup control has ended
[2025-12-09 17:13:59] 2025-12-09 16:13:54,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544717268800)>', '<ExcThread(monitor, started 140544365795072)>']
[2025-12-09 17:13:59] 2025-12-09 16:13:55,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 17:13:59] 2025-12-09 16:13:55,525 | INFO     | [monitor] control thread has ended
[2025-12-09 17:13:59] 2025-12-09 16:13:59,701 | INFO     | all workflow threads have been joined
[2025-12-09 17:13:59] 2025-12-09 16:13:59,701 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 17:13:59] 2025-12-09 16:13:59,702 | INFO     | traces error code: 0
[2025-12-09 17:13:59] 2025-12-09 16:13:59,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 17:13:59] 2025-12-09 16:13:59,754 [wrapper] ==== pilot stdout END ====
[2025-12-09 17:13:59] 2025-12-09 16:13:59,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 17:13:59] 2025-12-09 16:13:59,759 [wrapper] pilotpid: 19769
[2025-12-09 17:13:59] 2025-12-09 16:13:59,761 [wrapper] Pilot exit status: 0
[2025-12-09 17:13:59] 2025-12-09 16:13:59,768 [wrapper] pandaids: 6924260801
[2025-12-09 17:13:59] 2025-12-09 16:13:59,785 [wrapper] cleanup supervisor_pilot   43776 19770
[2025-12-09 17:13:59] 2025-12-09 16:13:59,787 [wrapper] Test setup, not cleaning
[2025-12-09 17:13:59] 2025-12-09 16:13:59,789 [wrapper] apfmon messages muted
[2025-12-09 17:13:59] 2025-12-09 16:13:59,792 [wrapper] ==== wrapper stdout END ====
[2025-12-09 17:13:59] 2025-12-09 16:13:59,794 [wrapper] ==== wrapper stderr END ====
[2025-12-09 17:13:59]  *** Error codes and diagnostics ***
[2025-12-09 17:13:59]     "exeErrorCode": 0,
[2025-12-09 17:13:59]     "exeErrorDiag": "",
[2025-12-09 17:13:59]     "pilotErrorCode": 0,
[2025-12-09 17:13:59]     "pilotErrorDiag": "",
[2025-12-09 17:13:59]  *** Listing of results directory ***
[2025-12-09 17:13:59] total 472384
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc    579449 Dec  9 13:40 pilot3.tar.gz
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc      5112 Dec  9 13:58 queuedata.json
[2025-12-09 17:13:59] -rwx------ 1 boinc boinc     36292 Dec  9 13:58 runpilot2-wrapper.sh
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc       100 Dec  9 15:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 17:13:59] -rwxr-xr-x 1 boinc boinc      7986 Dec  9 15:28 run_atlas
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc       105 Dec  9 15:28 job.xml
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc 274075067 Dec  9 15:28 EVNT.47240566._000075.pool.root.1
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc    592402 Dec  9 15:28 input.tar.gz
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc     15847 Dec  9 15:28 start_atlas.sh
[2025-12-09 17:13:59] drwxrwx--x 2 boinc boinc      4096 Dec  9 15:28 shared
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc         0 Dec  9 15:28 boinc_setup_complete
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc      6448 Dec  9 15:28 init_data.xml
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc         0 Dec  9 15:28 boinc_lockfile
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc      2601 Dec  9 15:28 pandaJob.out
[2025-12-09 17:13:59] -rw------- 1 boinc boinc    976286 Dec  9 15:28 agis_schedconf.cvmfs.json
[2025-12-09 17:13:59] -rw------- 1 boinc boinc   1516240 Dec  9 15:28 agis_ddmendpoints.agis.ALL.json
[2025-12-09 17:13:59] drwx------ 5 boinc boinc      4096 Dec  9 15:28 pilot3
[2025-12-09 17:13:59] -rw------- 1 boinc boinc 203421925 Dec  9 17:12 HITS.47240594._001520.pool.root.1
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc       529 Dec  9 17:12 boinc_task_state.xml
[2025-12-09 17:13:59] -rw------- 1 boinc boinc      1015 Dec  9 17:13 memory_monitor_summary.json
[2025-12-09 17:13:59] -rw------- 1 boinc boinc    258474 Dec  9 17:13 log.47240594._001520.job.log.tgz.1
[2025-12-09 17:13:59] -rw------- 1 boinc boinc      7747 Dec  9 17:13 heartbeat.json
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc        27 Dec  9 17:13 wrapper_checkpoint.txt
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc      8192 Dec  9 17:13 boinc_mmap_file
[2025-12-09 17:13:59] -rw------- 1 boinc boinc        95 Dec  9 17:13 pilot_heartbeat.json
[2025-12-09 17:13:59] -rw------- 1 boinc boinc      4822 Dec  9 17:13 pilotlog.txt
[2025-12-09 17:13:59] -rw------- 1 boinc boinc    908353 Dec  9 17:13 log.47240594._001520.job.log.1
[2025-12-09 17:13:59] -rw------- 1 boinc boinc       357 Dec  9 17:13 output.list
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc       620 Dec  9 17:13 runtime_log
[2025-12-09 17:13:59] -rw------- 1 boinc boinc   1187840 Dec  9 17:13 result.tar.gz
[2025-12-09 17:13:59] -rw------- 1 boinc boinc       663 Dec  9 17:13 ynkLDm3TCn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsxMKDm3D2Mwn.diag
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc      8917 Dec  9 17:13 runtime_log.err
[2025-12-09 17:13:59] -rw-r--r-- 1 boinc boinc     11796 Dec  9 17:13 stderr.txt
[2025-12-09 17:13:59] HITS file was successfully produced:
[2025-12-09 17:13:59] -rw------- 1 boinc boinc 203421925 Dec  9 17:12 shared/HITS.pool.root.1
[2025-12-09 17:13:59]  *** Contents of shared directory: ***
[2025-12-09 17:13:59] total 468072
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc 274075067 Dec  9 15:28 ATLAS.root_0
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc    592402 Dec  9 15:28 input.tar.gz
[2025-12-09 17:13:59] -rw-r--r-- 2 boinc boinc     15847 Dec  9 15:28 start_atlas.sh
[2025-12-09 17:13:59] -rw------- 1 boinc boinc 203421925 Dec  9 17:12 HITS.pool.root.1
[2025-12-09 17:13:59] -rw------- 1 boinc boinc   1187840 Dec  9 17:13 result.tar.gz
17:14:00 (16047): run_atlas exited; CPU time 18087.959939
17:14:00 (16047): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN