Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:22:45 (955569): wrapper (7.7.26015): starting
07:22:45 (955569): wrapper: running run_atlas (--nthreads 8)
[2025-12-09 07:22:45] Arguments: --nthreads 8
[2025-12-09 07:22:45] Threads: 8
[2025-12-09 07:22:45] Checking for CVMFS
[2025-12-09 07:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 07:22:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 07:22:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 07:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 07:22:47] 2.13.2.0 5582 51616 205340 153804 1 353 32119573 39288833 7284 16776704 0 42029252 99.644 37891016 37114 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-09 07:22:47] CVMFS is ok
[2025-12-09 07:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 07:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-09 07:22:47] Further information can be found at the LHC@home message board.
[2025-12-09 07:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 07:22:47] Checking for apptainer binary...
[2025-12-09 07:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 07:22:47] Running /usr/bin/apptainer --version
[2025-12-09 07:22:48] apptainer version 1.4.4-1.el9
[2025-12-09 07:22:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 07:22:48] c-210-22.aglt2.org
[2025-12-09 07:22:48] apptainer works
[2025-12-09 07:22:48] Set ATHENA_PROC_NUMBER=8
[2025-12-09 07:22:48] Set ATHENA_CORE_NUMBER=8
[2025-12-09 07:22:48] Starting ATLAS job with PandaID=6924227922
[2025-12-09 07:22:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 12:43:16]  *** The last 200 lines of the pilot log: ***
[2025-12-09 12:43:16] 2025-12-09 17:42:31,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 12:43:16] 2025-12-09 17:42:31,652 | INFO     | time since job start (19156s) is within the limit (174528.0s)
[2025-12-09 12:43:16] 2025-12-09 17:42:33,659 | INFO     | time since job start (19158s) is within the limit (174528.0s)
[2025-12-09 12:43:16] 2025-12-09 17:42:34,102 | INFO     | monitor loop #1241: job 0:6924227922 is in state 'finished'
[2025-12-09 12:43:16] 2025-12-09 17:42:34,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 12:43:16] 2025-12-09 17:42:35,668 | INFO     | time since job start (19160s) is within the limit (174528.0s)
[2025-12-09 12:43:16] 2025-12-09 17:42:36,607 | INFO     | monitor loop #1242: job 0:6924227922 is in state 'finished'
[2025-12-09 12:43:16] 2025-12-09 17:42:36,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 12:43:16] 2025-12-09 17:42:36,999 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-09 12:43:16] 2025-12-09 17:42:37,006 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8949750000006
[2025-12-09 12:43:16] 2025-12-09 17:42:37,092 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6924227922/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,093 | INFO     | extracted standard info from prmon json
[2025-12-09 12:43:16] 2025-12-09 17:42:37,093 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 12:43:16] 2025-12-09 17:42:37,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 12:43:16] 2025-12-09 17:42:37,117 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-09 12:43:16] 2025-12-09 17:42:37,117 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-09 12:43:16] 2025-12-09 17:42:37,149 | INFO     | fitting pss+swap vs Time
[2025-12-09 12:43:16] 2025-12-09 17:42:37,150 | INFO     | sum of square deviations: 9417916583.67945
[2025-12-09 12:43:16] 2025-12-09 17:42:37,152 | INFO     | sum of deviations: 81358750905.93588
[2025-12-09 12:43:16] 2025-12-09 17:42:37,153 | INFO     | mean x: 1765292587.5320513
[2025-12-09 12:43:16] 2025-12-09 17:42:37,153 | INFO     | mean y: 2536691.5064102565
[2025-12-09 12:43:16] 2025-12-09 17:42:37,153 | INFO     | intersect: -15247332919.146275
[2025-12-09 12:43:16] 2025-12-09 17:42:37,153 | INFO     | chi2: 3.9227182402077174
[2025-12-09 12:43:16] 2025-12-09 17:42:37,154 | INFO     | sum of square deviations: 8972424308.4495
[2025-12-09 12:43:16] 2025-12-09 17:42:37,157 | INFO     | sum of deviations: 101160139012.93813
[2025-12-09 12:43:16] 2025-12-09 17:42:37,157 | INFO     | mean x: 1765292435.0423453
[2025-12-09 12:43:16] 2025-12-09 17:42:37,157 | INFO     | mean y: 2543375.697068404
[2025-12-09 12:43:16] 2025-12-09 17:42:37,157 | INFO     | intersect: -19900352651.991035
[2025-12-09 12:43:16] 2025-12-09 17:42:37,158 | INFO     | chi2: 3.1704847527235605
[2025-12-09 12:43:16] 2025-12-09 17:42:37,158 | INFO     | current chi2=3.1704847527235605 (change=19.176332364985875 %)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,158 | INFO     | right removable region: 306
[2025-12-09 12:43:16] 2025-12-09 17:42:37,159 | INFO     | sum of square deviations: 8972265828.267103
[2025-12-09 12:43:16] 2025-12-09 17:42:37,170 | INFO     | sum of deviations: -5563752130.941381
[2025-12-09 12:43:16] 2025-12-09 17:42:37,170 | INFO     | mean x: 1765292740.0488598
[2025-12-09 12:43:16] 2025-12-09 17:42:37,170 | INFO     | mean y: 2566379.5960912053
[2025-12-09 12:43:16] 2025-12-09 17:42:37,170 | INFO     | intersect: 1097234263.0686367
[2025-12-09 12:43:16] 2025-12-09 17:42:37,171 | INFO     | chi2: 1.0992510301878646
[2025-12-09 12:43:16] 2025-12-09 17:42:37,171 | INFO     | current chi2=1.0992510301878646 (change=71.9773136158345 %)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,171 | INFO     | sum of square deviations: 8540969200.652295
[2025-12-09 12:43:16] 2025-12-09 17:42:37,225 | INFO     | sum of deviations: -28078909679.099346
[2025-12-09 12:43:16] 2025-12-09 17:42:37,225 | INFO     | mean x: 1765292892.5529802
[2025-12-09 12:43:16] 2025-12-09 17:42:37,225 | INFO     | mean y: 2574307.4437086093
[2025-12-09 12:43:16] 2025-12-09 17:42:37,225 | INFO     | intersect: 5806072543.143418
[2025-12-09 12:43:16] 2025-12-09 17:42:37,226 | INFO     | chi2: 0.8643751065970529
[2025-12-09 12:43:16] 2025-12-09 17:42:37,226 | INFO     | current chi2=0.8643751065970529 (change=21.366905023565995 %)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,226 | INFO     | left removable region: 20
[2025-12-09 12:43:16] 2025-12-09 17:42:37,227 | INFO     | sum of square deviations: 7254193407.958031
[2025-12-09 12:43:16] 2025-12-09 17:42:37,231 | INFO     | sum of deviations: -18576998175.93007
[2025-12-09 12:43:16] 2025-12-09 17:42:37,231 | INFO     | mean x: 1765293014.5734265
[2025-12-09 12:43:16] 2025-12-09 17:42:37,232 | INFO     | mean y: 2586230.8776223776
[2025-12-09 12:43:16] 2025-12-09 17:42:37,232 | INFO     | intersect: 4523260448.873654
[2025-12-09 12:43:16] 2025-12-09 17:42:37,232 | INFO     | chi2: 0.030585179423919015
[2025-12-09 12:43:16] 2025-12-09 17:42:37,232 | INFO     | current memory leak: -2.56 B/s (using 286 data points, chi2=0.03)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,233 | INFO     | could have reported an average CPU frequency of 2599 MHz (14 samples)
[2025-12-09 12:43:16] 2025-12-09 17:42:37,249 | INFO     | ..............................
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . Timing measurements:
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . get job = 0 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . initial setup = 3 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . payload setup = 40 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . stage-in = 0 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,250 | INFO     | . payload execution = 19047 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,275 | INFO     | . stage-out = 5 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,276 | INFO     | . log creation = 1 s
[2025-12-09 12:43:16] 2025-12-09 17:42:37,276 | INFO     | ..............................
[2025-12-09 12:43:16] 2025-12-09 17:42:37,747 | INFO     | time since job start (19162s) is within the limit (174528.0s)
[2025-12-09 12:43:16] 2025-12-09 17:42:38,805 | INFO     | 
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | job summary report
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | --------------------------------------------------
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | PanDA job id: 6924227922
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | task id: 47240594
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | errors: (none)
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | pilot state: finished 
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | transexitcode: 0
[2025-12-09 12:43:16] 2025-12-09 17:42:38,806 | INFO     | exeerrorcode: 0
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | exeerrordiag: 
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | exitcode: 0
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | exitmsg: OK
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | cpuconsumptiontime: 52626 s
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | nevents: 400
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | neventsw: 0
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | pid: 965852
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | pgrp: 965852
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | corecount: 8
[2025-12-09 12:43:16] 2025-12-09 17:42:38,807 | INFO     | event service: False
[2025-12-09 12:43:16] 2025-12-09 17:42:38,808 | INFO     | sizes: {0: 2283867, 1: 2283951, 2: 2284150, 12: 2284412, 13: 2284440, 19092: 2317701, 19093: 2317828, 19099: 2326882, 19102: 2326938, 19134: 2327132}
[2025-12-09 12:43:16] 2025-12-09 17:42:38,808 | INFO     | --------------------------------------------------
[2025-12-09 12:43:16] 2025-12-09 17:42:38,808 | INFO     | 
[2025-12-09 12:43:16] 2025-12-09 17:42:38,808 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-09 12:43:16] 2025-12-09 17:42:38,962 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,962 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,962 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,962 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | job 6924227922 has completed (purged errors)
[2025-12-09 12:43:16] 2025-12-09 17:42:38,964 | INFO     | overall cleanup function is called
[2025-12-09 12:43:16] 2025-12-09 17:42:40,004 | INFO     | --- collectZombieJob: --- 10, [965852]
[2025-12-09 12:43:16] 2025-12-09 17:42:40,005 | INFO     | zombie collector waiting for pid 965852
[2025-12-09 12:43:16] 2025-12-09 17:42:40,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 12:43:16] 2025-12-09 17:42:40,005 | INFO     | collected zombie processes
[2025-12-09 12:43:16] 2025-12-09 17:42:40,005 | INFO     | will attempt to kill all subprocesses of pid=965852
[2025-12-09 12:43:16] 2025-12-09 17:42:40,469 | INFO     | process IDs to be killed: [965852] (in reverse order)
[2025-12-09 12:43:16] 2025-12-09 17:42:40,564 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 12:43:16] 2025-12-09 17:42:40,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 12:43:16] 2025-12-09 17:42:40,573 | INFO     | did not find any defunct processes belonging to 965852
[2025-12-09 12:43:16] 2025-12-09 17:42:40,581 | INFO     | did not find any defunct processes belonging to 965852
[2025-12-09 12:43:16] 2025-12-09 17:42:40,581 | INFO     | ready for new job
[2025-12-09 12:43:16] 2025-12-09 17:42:40,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 12:43:16] 2025-12-09 17:42:40,584 | INFO     | ***************************************
[2025-12-09 12:43:16] 2025-12-09 17:42:40,585 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-09 12:43:16] 2025-12-09 17:42:40,585 | INFO     | ***************************************
[2025-12-09 12:43:16] 2025-12-09 17:42:40,585 | INFO     | 
[2025-12-09 12:43:16] 2025-12-09 17:42:40,588 | INFO     | architecture information:
[2025-12-09 12:43:16] 2025-12-09 17:42:40,588 | INFO     | executing command: cat /etc/os-release
[2025-12-09 12:43:16] 2025-12-09 17:42:40,609 | INFO     | cat /etc/os-release:
[2025-12-09 12:43:16] NAME="CentOS Linux"
[2025-12-09 12:43:16] VERSION="7 (Core)"
[2025-12-09 12:43:16] ID="centos"
[2025-12-09 12:43:16] ID_LIKE="rhel fedora"
[2025-12-09 12:43:16] VERSION_ID="7"
[2025-12-09 12:43:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 12:43:16] ANSI_COLOR="0;31"
[2025-12-09 12:43:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 12:43:16] HOME_URL="https://www.centos.org/"
[2025-12-09 12:43:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 12:43:16] 
[2025-12-09 12:43:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 12:43:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 12:43:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 12:43:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 12:43:16] 
[2025-12-09 12:43:16] 2025-12-09 17:42:40,609 | INFO     | ***************************************
[2025-12-09 12:43:16] 2025-12-09 17:42:41,143 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-09 12:43:16] 2025-12-09 17:42:41,183 | INFO     | sufficient remaining disk space (52390002688 B)
[2025-12-09 12:43:16] 2025-12-09 17:42:41,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 12:43:16] 2025-12-09 17:42:41,184 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 12:43:16] 2025-12-09 17:42:41,184 | INFO     | update_server=False
[2025-12-09 12:43:16] 2025-12-09 17:42:41,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 12:43:16] 2025-12-09 17:42:41,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 12:43:16] 2025-12-09 17:42:41,184 | INFO     | aborting loop
[2025-12-09 12:43:16] 2025-12-09 17:42:41,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 12:43:16] 2025-12-09 17:42:41,269 | INFO     | all data control threads have been joined
[2025-12-09 12:43:16] 2025-12-09 17:42:41,975 | INFO     | all payload control threads have been joined
[2025-12-09 12:43:16] 2025-12-09 17:42:42,190 | INFO     | [job] retrieve thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,191 | INFO     | [job] job monitor thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,208 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,209 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,286 | INFO     | [data] control thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,377 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,384 | INFO     | [payload] validate_post thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,389 | INFO     | [job] validate thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,390 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:42,860 | INFO     | all job control threads have been joined
[2025-12-09 12:43:16] 2025-12-09 17:42:43,000 | INFO     | [payload] control thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:43,102 | INFO     | [payload] failed_post thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:43,158 | INFO     | [data] copytool_in thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:43,212 | INFO     | [data] copytool_out thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:43,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 12:43:16] 2025-12-09 17:42:43,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 12:43:16] 2025-12-09 17:42:43,866 | INFO     | [job] control thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:44,554 | INFO     | [job] queue monitor thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:47,797 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 12:43:16] 2025-12-09 17:42:48,408 | INFO     | [monitor] cgroup control has ended
[2025-12-09 12:43:16] 2025-12-09 17:42:49,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687379818304)>', '<ExcThread(monitor, started 140686745659136)>']
[2025-12-09 12:43:16] 2025-12-09 17:42:54,863 | INFO     | all workflow threads have been joined
[2025-12-09 12:43:16] 2025-12-09 17:42:54,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 12:43:16] 2025-12-09 17:42:54,864 | INFO     | traces error code: 0
[2025-12-09 12:43:16] 2025-12-09 17:42:54,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 12:43:16] 2025-12-09 17:43:13,686 | INFO     | PID=959266 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-09 12:43:16] 2025-12-09 17:43:13,687 | INFO     | .. there are 7 such processes running
[2025-12-09 12:43:16] 2025-12-09 17:43:13,688 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 12:43:16] 2025-12-09 17:43:13,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 12:43:16] 2025-12-09 17:43:13,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 12:43:16] 2025-12-09 17:43:13,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 12:43:16] 2025-12-09 17:43:13,688 | INFO     | [monitor] control thread has ended
[2025-12-09 12:43:16] 2025-12-09 17:43:14,201 [wrapper] ==== pilot stdout END ====
[2025-12-09 12:43:16] 2025-12-09 17:43:14,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 12:43:16] 2025-12-09 17:43:14,430 [wrapper] pilotpid: 959266
[2025-12-09 12:43:16] 2025-12-09 17:43:14,496 [wrapper] Pilot exit status: 0
[2025-12-09 12:43:16] 2025-12-09 17:43:14,737 [wrapper] pandaids: 6924227922
[2025-12-09 12:43:16] 2025-12-09 17:43:15,701 [wrapper] cleanup supervisor_pilot 1347629 959267
[2025-12-09 12:43:16] 2025-12-09 17:43:15,749 [wrapper] Test setup, not cleaning
[2025-12-09 12:43:16] 2025-12-09 17:43:15,806 [wrapper] apfmon messages muted
[2025-12-09 12:43:16] 2025-12-09 17:43:15,860 [wrapper] ==== wrapper stdout END ====
[2025-12-09 12:43:16] 2025-12-09 17:43:15,916 [wrapper] ==== wrapper stderr END ====
[2025-12-09 12:43:16]  *** Error codes and diagnostics ***
[2025-12-09 12:43:16]     "exeErrorCode": 0,
[2025-12-09 12:43:16]     "exeErrorDiag": "",
[2025-12-09 12:43:16]     "pilotErrorCode": 0,
[2025-12-09 12:43:16]     "pilotErrorDiag": "",
[2025-12-09 12:43:16]  *** Listing of results directory ***
[2025-12-09 12:43:16] total 465380
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas    579449 Dec  9 06:59 pilot3.tar.gz
[2025-12-09 12:43:16] -rwx------. 1 boincer umatlas     36292 Dec  9 07:04 runpilot2-wrapper.sh
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas      5112 Dec  9 07:04 queuedata.json
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas       100 Dec  9 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 12:43:16] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  9 07:22 run_atlas
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas       105 Dec  9 07:22 job.xml
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas 271134165 Dec  9 07:22 EVNT.47240566._000052.pool.root.1
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas     15847 Dec  9 07:22 start_atlas.sh
[2025-12-09 12:43:16] drwxrwx--x. 2 boincer umatlas      4096 Dec  9 07:22 shared
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas    592404 Dec  9 07:22 input.tar.gz
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas         0 Dec  9 07:22 boinc_lockfile
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas      2611 Dec  9 07:22 pandaJob.out
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas        57 Dec  9 07:22 setup.sh.local
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas    975670 Dec  9 07:23 agis_schedconf.cvmfs.json
[2025-12-09 12:43:16] drwx------. 5 boincer umatlas      4096 Dec  9 07:23 pilot3
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas 195446461 Dec  9 12:40 HITS.47240594._001282.pool.root.1
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas      6661 Dec  9 12:40 init_data.xml
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas       531 Dec  9 12:40 boinc_task_state.xml
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas      1045 Dec  9 12:41 memory_monitor_summary.json
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas   1516240 Dec  9 12:41 agis_ddmendpoints.agis.ALL.json
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas    527419 Dec  9 12:42 log.47240594._001282.job.log.tgz.1
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas      7825 Dec  9 12:42 heartbeat.json
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas        28 Dec  9 12:43 wrapper_checkpoint.txt
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas      8192 Dec  9 12:43 boinc_mmap_file
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas        95 Dec  9 12:43 pilot_heartbeat.json
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas       821 Dec  9 12:43 pilotlog.txt
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas   2509120 Dec  9 12:43 log.47240594._001282.job.log.1
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas       357 Dec  9 12:43 output.list
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas       620 Dec  9 12:43 runtime_log
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas   3051520 Dec  9 12:43 result.tar.gz
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas       656 Dec  9 12:43 mluLDm7cBn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCxMKDmbhJexm.diag
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas      9343 Dec  9 12:43 runtime_log.err
[2025-12-09 12:43:16] -rw-r--r--. 1 boincer umatlas     21434 Dec  9 12:43 stderr.txt
[2025-12-09 12:43:16] HITS file was successfully produced:
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas 195446461 Dec  9 12:40 shared/HITS.pool.root.1
[2025-12-09 12:43:16]  *** Contents of shared directory: ***
[2025-12-09 12:43:16] total 459232
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas 271134165 Dec  9 07:22 ATLAS.root_0
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas     15847 Dec  9 07:22 start_atlas.sh
[2025-12-09 12:43:16] -rw-r--r--. 2 boincer umatlas    592404 Dec  9 07:22 input.tar.gz
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas 195446461 Dec  9 12:40 HITS.pool.root.1
[2025-12-09 12:43:16] -rw-------. 1 boincer umatlas   3051520 Dec  9 12:43 result.tar.gz
12:43:18 (955569): run_atlas exited; CPU time 52964.354785
12:43:18 (955569): called boinc_finish(0)

</stderr_txt>
]]>

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