Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:46:34 (197764): wrapper (7.7.26015): starting
21:46:34 (197764): wrapper: running run_atlas (--nthreads 8)
[2025-12-08 21:46:34] Arguments: --nthreads 8
[2025-12-08 21:46:34] Threads: 8
[2025-12-08 21:46:34] Checking for CVMFS
[2025-12-08 21:46:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 21:46:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 21:46:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 21:46:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 21:46:38] 2.13.2.0 5582 51040 199872 153789 0 112 31039101 39288833 9124 16776704 0 41476524 99.648 37194839 37323 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-08 21:46:38] CVMFS is ok
[2025-12-08 21:46:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 21:46:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 21:46:38] Further information can be found at the LHC@home message board.
[2025-12-08 21:46:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 21:46:38] Checking for apptainer binary...
[2025-12-08 21:46:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 21:46:38] Running /usr/bin/apptainer --version
[2025-12-08 21:46:38] apptainer version 1.4.4-1.el9
[2025-12-08 21:46:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 21:46:40] c-210-22.aglt2.org
[2025-12-08 21:46:40] apptainer works
[2025-12-08 21:46:40] Set ATHENA_PROC_NUMBER=8
[2025-12-08 21:46:40] Set ATHENA_CORE_NUMBER=8
[2025-12-08 21:46:41] Starting ATLAS job with PandaID=6905332721
[2025-12-08 21:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 18:54:21]  *** The last 200 lines of the pilot log: ***
[2025-12-09 18:54:21] 2025-12-09 23:53:18,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 18:54:21] 2025-12-09 23:53:20,028 | INFO     | time since job start (75890s) is within the limit (172800.0s)
[2025-12-09 18:54:21] 2025-12-09 23:53:21,430 | INFO     | monitor loop #4977: job 0:6905332721 is in state 'finished'
[2025-12-09 18:54:21] 2025-12-09 23:53:21,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 18:54:21] 2025-12-09 23:53:22,035 | INFO     | time since job start (75892s) is within the limit (172800.0s)
[2025-12-09 18:54:21] 2025-12-09 23:53:23,946 | INFO     | monitor loop #4978: job 0:6905332721 is in state 'finished'
[2025-12-09 18:54:21] 2025-12-09 23:53:23,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-09 18:54:21] 2025-12-09 23:53:24,334 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8944
[2025-12-09 18:54:21] 2025-12-09 23:53:24,349 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6905332721/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,350 | INFO     | extracted standard info from prmon json
[2025-12-09 18:54:21] 2025-12-09 23:53:24,350 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 18:54:21] 2025-12-09 23:53:24,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 18:54:21] 2025-12-09 23:53:24,402 | INFO     | fitting pss+swap vs Time
[2025-12-09 18:54:21] 2025-12-09 23:53:24,404 | INFO     | sum of square deviations: 591260914194.6425
[2025-12-09 18:54:21] 2025-12-09 23:53:24,511 | INFO     | sum of deviations: 2332969225569.817
[2025-12-09 18:54:21] 2025-12-09 23:53:24,511 | INFO     | mean x: 1765286536.3887098
[2025-12-09 18:54:21] 2025-12-09 23:53:24,511 | INFO     | mean y: 3504385.6580645163
[2025-12-09 18:54:21] 2025-12-09 23:53:24,511 | INFO     | intersect: -6961879364.284575
[2025-12-09 18:54:21] 2025-12-09 23:53:24,513 | INFO     | chi2: 15.053686966914702
[2025-12-09 18:54:21] 2025-12-09 23:53:24,530 | INFO     | sum of square deviations: 584139045202.7493
[2025-12-09 18:54:21] 2025-12-09 23:53:24,627 | INFO     | sum of deviations: 2874076453654.893
[2025-12-09 18:54:21] 2025-12-09 23:53:24,628 | INFO     | mean x: 1765286383.900405
[2025-12-09 18:54:21] 2025-12-09 23:53:24,628 | INFO     | mean y: 3515968.804048583
[2025-12-09 18:54:21] 2025-12-09 23:53:24,628 | INFO     | intersect: -8682032568.98417
[2025-12-09 18:54:21] 2025-12-09 23:53:24,630 | INFO     | chi2: 11.456514703960892
[2025-12-09 18:54:21] 2025-12-09 23:53:24,630 | INFO     | current chi2=11.456514703960892 (change=23.89562285212751 %)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,630 | INFO     | right removable region: 1234
[2025-12-09 18:54:21] 2025-12-09 23:53:24,632 | INFO     | sum of square deviations: 584136860182.7496
[2025-12-09 18:54:21] 2025-12-09 23:53:24,693 | INFO     | sum of deviations: 1730042126413.1016
[2025-12-09 18:54:21] 2025-12-09 23:53:24,694 | INFO     | mean x: 1765286688.900405
[2025-12-09 18:54:21] 2025-12-09 23:53:24,694 | INFO     | mean y: 3517290.391093117
[2025-12-09 18:54:21] 2025-12-09 23:53:24,694 | INFO     | intersect: -5224744346.853536
[2025-12-09 18:54:21] 2025-12-09 23:53:24,696 | INFO     | chi2: 10.94670397881435
[2025-12-09 18:54:21] 2025-12-09 23:53:24,696 | INFO     | current chi2=10.94670397881435 (change=27.282239873372966 %)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,698 | INFO     | sum of square deviations: 577070474515.4829
[2025-12-09 18:54:21] 2025-12-09 23:53:24,777 | INFO     | sum of deviations: 1449703407625.773
[2025-12-09 18:54:21] 2025-12-09 23:53:24,777 | INFO     | mean x: 1765286841.4097562
[2025-12-09 18:54:21] 2025-12-09 23:53:24,777 | INFO     | mean y: 3523333.2682926827
[2025-12-09 18:54:21] 2025-12-09 23:53:24,778 | INFO     | intersect: -4431190384.458048
[2025-12-09 18:54:21] 2025-12-09 23:53:24,779 | INFO     | chi2: 9.874312551070691
[2025-12-09 18:54:21] 2025-12-09 23:53:24,779 | INFO     | current chi2=9.874312551070691 (change=9.796477824001695 %)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,780 | INFO     | left removable region: 20
[2025-12-09 18:54:21] 2025-12-09 23:53:24,781 | INFO     | sum of square deviations: 554844521042.2285
[2025-12-09 18:54:21] 2025-12-09 23:53:24,864 | INFO     | sum of deviations: 1897648463555.718
[2025-12-09 18:54:21] 2025-12-09 23:53:24,864 | INFO     | mean x: 1765286963.434102
[2025-12-09 18:54:21] 2025-12-09 23:53:24,864 | INFO     | mean y: 3541427.6589785833
[2025-12-09 18:54:21] 2025-12-09 23:53:24,864 | INFO     | intersect: -6033995155.748513
[2025-12-09 18:54:21] 2025-12-09 23:53:24,866 | INFO     | chi2: 5.529057449879737
[2025-12-09 18:54:21] 2025-12-09 23:53:24,866 | INFO     | current memory leak: 3.42 B/s (using 1214 data points, chi2=5.53)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | could have reported an average CPU frequency of 2600 MHz (45 samples)
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | ..............................
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | . Timing measurements:
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | . get job = 1 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | . initial setup = 8 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | . payload setup = 84 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,868 | INFO     | . stage-in = 1 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,869 | INFO     | . payload execution = 75614 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,869 | INFO     | . stage-out = 16 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,869 | INFO     | . log creation = 7 s
[2025-12-09 18:54:21] 2025-12-09 23:53:24,869 | INFO     | ..............................
[2025-12-09 18:54:21] 2025-12-09 23:53:24,909 | INFO     | PID=202911 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-09 18:54:21] 2025-12-09 23:53:24,909 | INFO     | .. there are 7 such processes running
[2025-12-09 18:54:21] 2025-12-09 23:53:25,359 | INFO     | 
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | job summary report
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | --------------------------------------------------
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | PanDA job id: 6905332721
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | task id: 47530725
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | errors: (none)
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | pilot state: finished 
[2025-12-09 18:54:21] 2025-12-09 23:53:25,360 | INFO     | transexitcode: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | exeerrorcode: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | exeerrordiag: 
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | exitcode: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | exitmsg: OK
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | cpuconsumptiontime: 256998 s
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | nevents: 1000
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | neventsw: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | pid: 211859
[2025-12-09 18:54:21] 2025-12-09 23:53:25,361 | INFO     | pgrp: 211859
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | corecount: 8
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | event service: False
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | sizes: {0: 2284172, 2: 2284228, 3: 2284284, 4: 2284455, 5: 2284483, 16: 2284539, 28: 2284695, 40: 2284723, 53: 2285013, 64: 2285041, 75702: 2364627, 75703: 2364906
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | --------------------------------------------------
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | 
[2025-12-09 18:54:21] 2025-12-09 23:53:25,362 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 18:54:21] 2025-12-09 23:53:25,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 18:54:21] 2025-12-09 23:53:25,632 | INFO     | job 6905332721 has completed (purged errors)
[2025-12-09 18:54:21] 2025-12-09 23:53:25,633 | INFO     | overall cleanup function is called
[2025-12-09 18:54:21] 2025-12-09 23:53:26,784 | INFO     | --- collectZombieJob: --- 10, [211859]
[2025-12-09 18:54:21] 2025-12-09 23:53:26,788 | INFO     | zombie collector waiting for pid 211859
[2025-12-09 18:54:21] 2025-12-09 23:53:26,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 18:54:21] 2025-12-09 23:53:26,789 | INFO     | collected zombie processes
[2025-12-09 18:54:21] 2025-12-09 23:53:26,789 | INFO     | will attempt to kill all subprocesses of pid=211859
[2025-12-09 18:54:21] 2025-12-09 23:53:27,120 | INFO     | process IDs to be killed: [211859] (in reverse order)
[2025-12-09 18:54:21] 2025-12-09 23:53:27,191 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 18:54:21] 2025-12-09 23:53:27,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 18:54:21] 2025-12-09 23:53:27,308 | INFO     | did not find any defunct processes belonging to 211859
[2025-12-09 18:54:21] 2025-12-09 23:53:27,315 | INFO     | did not find any defunct processes belonging to 211859
[2025-12-09 18:54:21] 2025-12-09 23:53:27,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 18:54:21] 2025-12-09 23:53:27,322 | INFO     | ready for new job
[2025-12-09 18:54:21] 2025-12-09 23:53:27,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 18:54:21] 2025-12-09 23:53:27,331 | INFO     | ***************************************
[2025-12-09 18:54:21] 2025-12-09 23:53:27,331 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 18:54:21] 2025-12-09 23:53:27,331 | INFO     | ***************************************
[2025-12-09 18:54:21] 2025-12-09 23:53:27,331 | INFO     | 
[2025-12-09 18:54:21] 2025-12-09 23:53:27,333 | INFO     | architecture information:
[2025-12-09 18:54:21] 2025-12-09 23:53:27,339 | INFO     | executing command: cat /etc/os-release
[2025-12-09 18:54:21] 2025-12-09 23:53:27,373 | INFO     | cat /etc/os-release:
[2025-12-09 18:54:21] NAME="CentOS Linux"
[2025-12-09 18:54:21] VERSION="7 (Core)"
[2025-12-09 18:54:21] ID="centos"
[2025-12-09 18:54:21] ID_LIKE="rhel fedora"
[2025-12-09 18:54:21] VERSION_ID="7"
[2025-12-09 18:54:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 18:54:21] ANSI_COLOR="0;31"
[2025-12-09 18:54:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 18:54:21] HOME_URL="https://www.centos.org/"
[2025-12-09 18:54:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 18:54:21] 
[2025-12-09 18:54:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 18:54:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 18:54:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 18:54:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 18:54:21] 
[2025-12-09 18:54:21] 2025-12-09 23:53:27,374 | INFO     | ***************************************
[2025-12-09 18:54:21] 2025-12-09 23:53:27,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 18:54:21] 2025-12-09 23:53:27,933 | INFO     | sufficient remaining disk space (52220133376 B)
[2025-12-09 18:54:21] 2025-12-09 23:53:27,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 18:54:21] 2025-12-09 23:53:27,933 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 18:54:21] 2025-12-09 23:53:27,934 | INFO     | update_server=False
[2025-12-09 18:54:21] 2025-12-09 23:53:27,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 18:54:21] 2025-12-09 23:53:27,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 18:54:21] 2025-12-09 23:53:27,934 | INFO     | aborting loop
[2025-12-09 18:54:21] 2025-12-09 23:53:28,038 | INFO     | all data control threads have been joined
[2025-12-09 18:54:21] 2025-12-09 23:53:28,123 | INFO     | all payload control threads have been joined
[2025-12-09 18:54:21] 2025-12-09 23:53:28,835 | INFO     | all job control threads have been joined
[2025-12-09 18:54:21] 2025-12-09 23:53:28,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 18:54:21] 2025-12-09 23:53:28,941 | INFO     | [job] retrieve thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:28,946 | INFO     | [job] job monitor thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:28,947 | INFO     | [payload] failed_post thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:28,969 | INFO     | [data] copytool_in thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:28,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,044 | INFO     | [data] control thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,130 | INFO     | [payload] control thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,152 | INFO     | [job] validate thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 18:54:21] 2025-12-09 23:53:29,570 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,770 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:29,841 | INFO     | [job] control thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:30,082 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:30,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 18:54:21] 2025-12-09 23:53:30,413 | INFO     | [payload] validate_post thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:30,897 | INFO     | [data] copytool_out thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:31,370 | INFO     | [job] queue monitor thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:33,471 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 18:54:21] 2025-12-09 23:53:44,994 | INFO     | [monitor] cgroup control has ended
[2025-12-09 18:54:21] 2025-12-09 23:53:46,354 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220252186432)>', '<ExcThread(monitor, started 140219391137536)>']
[2025-12-09 18:54:21] 2025-12-09 23:53:51,380 | INFO     | all workflow threads have been joined
[2025-12-09 18:54:21] 2025-12-09 23:53:51,402 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 18:54:21] 2025-12-09 23:53:51,403 | INFO     | traces error code: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:51,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 18:54:21] 2025-12-09 23:53:59,555 | INFO     | PID=202911 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-09 18:54:21] 2025-12-09 23:53:59,556 | INFO     | .. there are 7 such processes running
[2025-12-09 18:54:21] 2025-12-09 23:53:59,556 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 18:54:21] 2025-12-09 23:53:59,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 18:54:21] 2025-12-09 23:53:59,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 18:54:21] 2025-12-09 23:53:59,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 18:54:21] 2025-12-09 23:53:59,557 | CRITICAL | thread 'MainThread' is not alive
[2025-12-09 18:54:21] 2025-12-09 23:53:59,557 | INFO     | [monitor] control thread has ended
[2025-12-09 18:54:21] 2025-12-09 23:53:59,745 [wrapper] ==== pilot stdout END ====
[2025-12-09 18:54:21] 2025-12-09 23:53:59,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 18:54:21] 2025-12-09 23:53:59,829 [wrapper] pilotpid: 202911
[2025-12-09 18:54:21] 2025-12-09 23:53:59,876 [wrapper] Pilot exit status: 0
[2025-12-09 18:54:21] 2025-12-09 23:53:59,997 [wrapper] pandaids: 6905332721
[2025-12-09 18:54:21] 2025-12-09 23:54:00,752 [wrapper] cleanup supervisor_pilot 1801660 202912
[2025-12-09 18:54:21] 2025-12-09 23:54:00,810 [wrapper] Test setup, not cleaning
[2025-12-09 18:54:21] 2025-12-09 23:54:00,861 [wrapper] apfmon messages muted
[2025-12-09 18:54:21] 2025-12-09 23:54:00,894 [wrapper] ==== wrapper stdout END ====
[2025-12-09 18:54:21] 2025-12-09 23:54:00,897 [wrapper] ==== wrapper stderr END ====
[2025-12-09 18:54:21]  *** Error codes and diagnostics ***
[2025-12-09 18:54:21]     "exeErrorCode": 0,
[2025-12-09 18:54:21]     "exeErrorDiag": "",
[2025-12-09 18:54:21]     "pilotErrorCode": 0,
[2025-12-09 18:54:21]     "pilotErrorDiag": "",
[2025-12-09 18:54:21]  *** Listing of results directory ***
[2025-12-09 18:54:21] total 1080008
[2025-12-09 18:54:21] -rwx------. 1 boincer umatlas     36292 Nov 29 19:21 runpilot2-wrapper.sh
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:24 pilot3.tar.gz
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:27 queuedata.json
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas       100 Dec  8 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 18:54:21] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  8 21:46 run_atlas
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas       105 Dec  8 21:46 job.xml
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas 377336877 Dec  8 21:46 EVNT.47530720._000064.pool.root.1
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 21:46 start_atlas.sh
[2025-12-09 18:54:21] drwxrwx--x. 2 boincer umatlas      4096 Dec  8 21:46 shared
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas    590132 Dec  8 21:46 input.tar.gz
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas         0 Dec  8 21:46 boinc_lockfile
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas      2878 Dec  8 21:46 pandaJob.out
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas        57 Dec  8 21:46 setup.sh.local
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas    981538 Dec  8 21:48 agis_schedconf.cvmfs.json
[2025-12-09 18:54:21] drwx------. 5 boincer umatlas      4096 Dec  8 21:48 pilot3
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas       533 Dec  9 18:19 boinc_task_state.xml
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas 699780563 Dec  9 18:50 HITS.47530725._002037.pool.root.1
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas      1061 Dec  9 18:52 memory_monitor_summary.json
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas   1516240 Dec  9 18:52 agis_ddmendpoints.agis.ALL.json
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas   2425666 Dec  9 18:52 log.47530725._002037.job.log.tgz.1
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas        95 Dec  9 18:53 pilot_heartbeat.json
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas     27983 Dec  9 18:53 heartbeat.json
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas       891 Dec  9 18:53 pilotlog.txt
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas  10009906 Dec  9 18:54 log.47530725._002037.job.log.1
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas       353 Dec  9 18:54 output.list
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas       620 Dec  9 18:54 runtime_log
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas  12472320 Dec  9 18:54 result.tar.gz
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas      9343 Dec  9 18:54 runtime_log.err
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas       662 Dec  9 18:54 Ia0KDmjMkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNGMKDmi7ulAo.diag
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas      6663 Dec  9 18:54 init_data.xml
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas      8192 Dec  9 18:54 boinc_mmap_file
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas        29 Dec  9 18:54 wrapper_checkpoint.txt
[2025-12-09 18:54:21] -rw-r--r--. 1 boincer umatlas     21621 Dec  9 18:54 stderr.txt
[2025-12-09 18:54:21] HITS file was successfully produced:
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas 699780563 Dec  9 18:50 shared/HITS.pool.root.1
[2025-12-09 18:54:21]  *** Contents of shared directory: ***
[2025-12-09 18:54:21] total 1064660
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas 377336877 Dec  8 21:46 ATLAS.root_0
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 21:46 start_atlas.sh
[2025-12-09 18:54:21] -rw-r--r--. 2 boincer umatlas    590132 Dec  8 21:46 input.tar.gz
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas 699780563 Dec  9 18:50 HITS.pool.root.1
[2025-12-09 18:54:21] -rw-------. 1 boincer umatlas  12472320 Dec  9 18:54 result.tar.gz
18:54:23 (197764): run_atlas exited; CPU time 257287.958172
18:54:23 (197764): called boinc_finish(0)

</stderr_txt>
]]>

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