Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:13:30 (2882): wrapper (7.7.26015): starting
16:13:30 (2882): wrapper: running run_atlas (--nthreads 12)
[2025-12-08 16:13:30] Arguments: --nthreads 12
[2025-12-08 16:13:30] Threads: 12
[2025-12-08 16:13:30] Checking for CVMFS
[2025-12-08 16:13:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 16:13:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 16:13:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 16:13:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 16:13:31] 2.11.2.0 3103 95462 108220 153780 1 1 17309451 20275200 1 130560 0 42299402 99.930 4967713 32282 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-08 16:13:31] CVMFS is ok
[2025-12-08 16:13:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 16:13:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 16:13:31] Further information can be found at the LHC@home message board.
[2025-12-08 16:13:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 16:13:31] Checking for apptainer binary...
[2025-12-08 16:13:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 16:13:31] Running /usr/bin/apptainer --version
[2025-12-08 16:13:31] apptainer version 1.3.2-1.el7
[2025-12-08 16:13:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 16:13:33] c-115-41.aglt2.org
[2025-12-08 16:13:33] apptainer works
[2025-12-08 16:13:33] Set ATHENA_PROC_NUMBER=12
[2025-12-08 16:13:33] Set ATHENA_CORE_NUMBER=12
[2025-12-08 16:13:33] Starting ATLAS job with PandaID=6895329693
[2025-12-08 16:13:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 22:42:55]  *** The last 200 lines of the pilot log: ***
[2025-12-08 22:42:56] 2025-12-09 03:42:21,313 | INFO     | monitor loop #1742: job 0:6895329693 is in state 'finished'
[2025-12-08 22:42:56] 2025-12-09 03:42:21,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 22:42:56] 2025-12-09 03:42:22,506 | INFO     | time since job start (23313s) is within the limit (172800.0s)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,721 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-08 22:42:56] 2025-12-09 03:42:23,725 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-12-08 22:42:56] 2025-12-09 03:42:23,727 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895329693/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,728 | INFO     | extracted standard info from prmon json
[2025-12-08 22:42:56] 2025-12-09 03:42:23,728 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 22:42:56] 2025-12-09 03:42:23,729 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 22:42:56] 2025-12-09 03:42:23,734 | INFO     | fitting pss+swap vs Time
[2025-12-08 22:42:56] 2025-12-09 03:42:23,735 | INFO     | sum of square deviations: 17284736591.46583
[2025-12-08 22:42:56] 2025-12-09 03:42:23,737 | INFO     | sum of deviations: 246406331605.47113
[2025-12-08 22:42:56] 2025-12-09 03:42:23,738 | INFO     | mean x: 1765240078.7172775
[2025-12-08 22:42:56] 2025-12-09 03:42:23,738 | INFO     | mean y: 4051356.8376963353
[2025-12-08 22:42:56] 2025-12-09 03:42:23,738 | INFO     | intersect: -25160713515.219296
[2025-12-08 22:42:56] 2025-12-09 03:42:23,738 | INFO     | chi2: 5.751866681873799
[2025-12-08 22:42:56] 2025-12-09 03:42:23,739 | INFO     | sum of square deviations: 16614879578.726688
[2025-12-08 22:42:56] 2025-12-09 03:42:23,741 | INFO     | sum of deviations: 416330711749.6632
[2025-12-08 22:42:56] 2025-12-09 03:42:23,742 | INFO     | mean x: 1765239926.220159
[2025-12-08 22:42:56] 2025-12-09 03:42:23,742 | INFO     | mean y: 4090004.2811671086
[2025-12-08 22:42:56] 2025-12-09 03:42:23,742 | INFO     | intersect: -44228767141.017746
[2025-12-08 22:42:56] 2025-12-09 03:42:23,742 | INFO     | chi2: 2.892257199554038
[2025-12-08 22:42:56] 2025-12-09 03:42:23,742 | INFO     | current chi2=2.892257199554038 (change=49.71619893992709 %)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,743 | INFO     | sum of square deviations: 15962557778.48109
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | sum of deviations: 460797172044.0053
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | mean x: 1765239773.7231183
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | mean y: 4100338.6505376343
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | intersect: -50953741568.60132
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | chi2: 2.512495989041499
[2025-12-08 22:42:56] 2025-12-09 03:42:23,746 | INFO     | current chi2=2.512495989041499 (change=13.130271075860584 %)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,747 | INFO     | right removable region: 371
[2025-12-08 22:42:56] 2025-12-09 03:42:23,747 | INFO     | sum of square deviations: 16614828948.7267
[2025-12-08 22:42:56] 2025-12-09 03:42:23,750 | INFO     | sum of deviations: 103287979323.81183
[2025-12-08 22:42:56] 2025-12-09 03:42:23,750 | INFO     | mean x: 1765240231.220159
[2025-12-08 22:42:56] 2025-12-09 03:42:23,750 | INFO     | mean y: 4083805.472148541
[2025-12-08 22:42:56] 2025-12-09 03:42:23,750 | INFO     | intersect: -10969733443.35373
[2025-12-08 22:42:56] 2025-12-09 03:42:23,751 | INFO     | chi2: 3.3696061093038825
[2025-12-08 22:42:56] 2025-12-09 03:42:23,751 | INFO     | current chi2=3.3696061093038825 (change=41.41717296886029 %)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,751 | INFO     | sum of square deviations: 15962456518.48109
[2025-12-08 22:42:56] 2025-12-09 03:42:23,754 | INFO     | sum of deviations: 72937699877.19885
[2025-12-08 22:42:56] 2025-12-09 03:42:23,754 | INFO     | mean x: 1765240383.7231183
[2025-12-08 22:42:56] 2025-12-09 03:42:23,754 | INFO     | mean y: 4090890.069892473
[2025-12-08 22:42:56] 2025-12-09 03:42:23,754 | INFO     | intersect: -8061871461.654627
[2025-12-08 22:42:56] 2025-12-09 03:42:23,755 | INFO     | chi2: 3.316633381987544
[2025-12-08 22:42:56] 2025-12-09 03:42:23,755 | INFO     | current chi2=3.316633381987544 (change=1.5720747647647686 %)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,755 | INFO     | left removable region: 20
[2025-12-08 22:42:56] 2025-12-09 03:42:23,755 | INFO     | sum of square deviations: 13408927463.219372
[2025-12-08 22:42:56] 2025-12-09 03:42:23,758 | INFO     | sum of deviations: 248362596737.19672
[2025-12-08 22:42:56] 2025-12-09 03:42:23,758 | INFO     | mean x: 1765240353.2250712
[2025-12-08 22:42:56] 2025-12-09 03:42:23,758 | INFO     | mean y: 4151144.136752137
[2025-12-08 22:42:56] 2025-12-09 03:42:23,758 | INFO     | intersect: -32691952194.094307
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | chi2: 0.015781501503201067
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | current memory leak: 18.52 B/s (using 351 data points, chi2=0.02)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | could have reported an average CPU frequency of 2614 MHz (16 samples)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | ..............................
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | . Timing measurements:
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | . get job = 0 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,759 | INFO     | . initial setup = 2 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | . payload setup = 7 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | . stage-in = 0 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | . payload execution = 23276 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | . stage-out = 3 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | . log creation = 0 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,760 | INFO     | ..............................
[2025-12-08 22:42:56] 2025-12-09 03:42:23,833 | INFO     | 
[2025-12-08 22:42:56] 2025-12-09 03:42:23,834 | INFO     | job summary report
[2025-12-08 22:42:56] 2025-12-09 03:42:23,834 | INFO     | --------------------------------------------------
[2025-12-08 22:42:56] 2025-12-09 03:42:23,834 | INFO     | PanDA job id: 6895329693
[2025-12-08 22:42:56] 2025-12-09 03:42:23,834 | INFO     | task id: 47556137
[2025-12-08 22:42:56] 2025-12-09 03:42:23,834 | INFO     | errors: (none)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | pilot state: finished 
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | transexitcode: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | exeerrorcode: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | exeerrordiag: 
[2025-12-08 22:42:56] 2025-12-09 03:42:23,835 | INFO     | exitcode: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | exitmsg: OK
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | cpuconsumptiontime: 269072 s
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | nevents: 1000
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | neventsw: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | pid: 13536
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | pgrp: 13536
[2025-12-08 22:42:56] 2025-12-09 03:42:23,836 | INFO     | corecount: 12
[2025-12-08 22:42:56] 2025-12-09 03:42:23,837 | INFO     | event service: False
[2025-12-08 22:42:56] 2025-12-09 03:42:23,837 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 23287: 2320510, 23291: 2329560, 23298: 2329750}
[2025-12-08 22:42:56] 2025-12-09 03:42:23,837 | INFO     | --------------------------------------------------
[2025-12-08 22:42:56] 2025-12-09 03:42:23,837 | INFO     | 
[2025-12-08 22:42:56] 2025-12-09 03:42:23,837 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-08 22:42:56] 2025-12-09 03:42:23,860 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,861 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,861 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,861 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,861 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,861 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,862 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,862 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,864 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,864 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 22:42:56] 2025-12-09 03:42:23,864 | INFO     | job 6895329693 has completed (purged errors)
[2025-12-08 22:42:56] 2025-12-09 03:42:23,864 | INFO     | overall cleanup function is called
[2025-12-08 22:42:56] 2025-12-09 03:42:24,880 | INFO     | --- collectZombieJob: --- 10, [13536]
[2025-12-08 22:42:56] 2025-12-09 03:42:24,881 | INFO     | zombie collector waiting for pid 13536
[2025-12-08 22:42:56] 2025-12-09 03:42:24,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 22:42:56] 2025-12-09 03:42:24,881 | INFO     | collected zombie processes
[2025-12-08 22:42:56] 2025-12-09 03:42:24,881 | INFO     | will attempt to kill all subprocesses of pid=13536
[2025-12-08 22:42:56] 2025-12-09 03:42:24,969 | INFO     | process IDs to be killed: [13536] (in reverse order)
[2025-12-08 22:42:56] 2025-12-09 03:42:25,019 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 22:42:56] 2025-12-09 03:42:25,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 22:42:56] 2025-12-09 03:42:25,022 | INFO     | did not find any defunct processes belonging to 13536
[2025-12-08 22:42:56] 2025-12-09 03:42:25,026 | INFO     | did not find any defunct processes belonging to 13536
[2025-12-08 22:42:56] 2025-12-09 03:42:25,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 22:42:56] 2025-12-09 03:42:25,028 | INFO     | ready for new job
[2025-12-08 22:42:56] 2025-12-09 03:42:25,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 22:42:56] 2025-12-09 03:42:25,030 | INFO     | ***************************************
[2025-12-08 22:42:56] 2025-12-09 03:42:25,030 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 22:42:56] 2025-12-09 03:42:25,031 | INFO     | ***************************************
[2025-12-08 22:42:56] 2025-12-09 03:42:25,031 | INFO     | 
[2025-12-08 22:42:56] 2025-12-09 03:42:25,031 | INFO     | architecture information:
[2025-12-08 22:42:56] 2025-12-09 03:42:25,032 | INFO     | executing command: cat /etc/os-release
[2025-12-08 22:42:56] 2025-12-09 03:42:25,046 | INFO     | cat /etc/os-release:
[2025-12-08 22:42:56] NAME="CentOS Linux"
[2025-12-08 22:42:56] VERSION="7 (Core)"
[2025-12-08 22:42:56] ID="centos"
[2025-12-08 22:42:56] ID_LIKE="rhel fedora"
[2025-12-08 22:42:56] VERSION_ID="7"
[2025-12-08 22:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 22:42:56] ANSI_COLOR="0;31"
[2025-12-08 22:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 22:42:56] HOME_URL="https://www.centos.org/"
[2025-12-08 22:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 22:42:56] 
[2025-12-08 22:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 22:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 22:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 22:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 22:42:56] 
[2025-12-08 22:42:56] 2025-12-09 03:42:25,046 | INFO     | ***************************************
[2025-12-08 22:42:56] 2025-12-09 03:42:25,549 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-08 22:42:56] 2025-12-09 03:42:25,566 | INFO     | sufficient remaining disk space (17465081856 B)
[2025-12-08 22:42:56] 2025-12-09 03:42:25,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 22:42:56] 2025-12-09 03:42:25,567 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 22:42:56] 2025-12-09 03:42:25,567 | INFO     | update_server=False
[2025-12-08 22:42:56] 2025-12-09 03:42:25,567 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 22:42:56] 2025-12-09 03:42:25,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 22:42:56] 2025-12-09 03:42:25,568 | INFO     | aborting loop
[2025-12-08 22:42:56] 2025-12-09 03:42:25,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 22:42:56] 2025-12-09 03:42:25,727 | INFO     | all payload control threads have been joined
[2025-12-08 22:42:56] 2025-12-09 03:42:26,352 | INFO     | all data control threads have been joined
[2025-12-08 22:42:56] 2025-12-09 03:42:26,572 | INFO     | [job] retrieve thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,573 | INFO     | [job] job monitor thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,574 | INFO     | [job] queue monitor thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,668 | INFO     | [job] validate thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 22:42:56] 2025-12-09 03:42:26,730 | INFO     | [payload] control thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,761 | INFO     | [payload] failed_post thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,764 | INFO     | [payload] validate_post thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 22:42:56] 2025-12-09 03:42:26,853 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:26,977 | INFO     | [data] copytool_in thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:27,035 | INFO     | all job control threads have been joined
[2025-12-08 22:42:56] 2025-12-09 03:42:27,052 | INFO     | [monitor] cgroup control has ended
[2025-12-08 22:42:56] 2025-12-09 03:42:27,357 | INFO     | [data] control thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:27,370 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:27,801 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:28,041 | INFO     | [job] control thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:28,697 | INFO     | [data] copytool_out thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:30,771 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:36,004 | INFO     | job.realtimelogging is not enabled
[2025-12-08 22:42:56] 2025-12-09 03:42:37,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 22:42:56] 2025-12-09 03:42:38,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579666024256)>', '<ExcThread(monitor, started 140578499061504)>']
[2025-12-08 22:42:56] 2025-12-09 03:42:43,680 | INFO     | all workflow threads have been joined
[2025-12-08 22:42:56] 2025-12-09 03:42:43,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 22:42:56] 2025-12-09 03:42:43,680 | INFO     | traces error code: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:43,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 22:42:56] 2025-12-09 03:42:55,704 | INFO     | PID=7102 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-08 22:42:56] 2025-12-09 03:42:55,704 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 22:42:56] 2025-12-09 03:42:55,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 22:42:56] 2025-12-09 03:42:55,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 22:42:56] 2025-12-09 03:42:55,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 22:42:56] 2025-12-09 03:42:55,705 | INFO     | [monitor] control thread has ended
[2025-12-08 22:42:56] 2025-12-09 03:42:55,787 [wrapper] ==== pilot stdout END ====
[2025-12-08 22:42:56] 2025-12-09 03:42:55,791 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 22:42:56] 2025-12-09 03:42:55,796 [wrapper] pilotpid: 7102
[2025-12-08 22:42:56] 2025-12-09 03:42:55,800 [wrapper] Pilot exit status: 0
[2025-12-08 22:42:56] 2025-12-09 03:42:55,813 [wrapper] pandaids: 6895329693
[2025-12-08 22:42:56] 2025-12-09 03:42:55,853 [wrapper] cleanup supervisor_pilot 13143 7103
[2025-12-08 22:42:56] 2025-12-09 03:42:55,857 [wrapper] Test setup, not cleaning
[2025-12-08 22:42:56] 2025-12-09 03:42:55,861 [wrapper] apfmon messages muted
[2025-12-08 22:42:56] 2025-12-09 03:42:55,864 [wrapper] ==== wrapper stdout END ====
[2025-12-08 22:42:56] 2025-12-09 03:42:55,868 [wrapper] ==== wrapper stderr END ====
[2025-12-08 22:42:56]  *** Error codes and diagnostics ***
[2025-12-08 22:42:56]     "exeErrorCode": 0,
[2025-12-08 22:42:56]     "exeErrorDiag": "",
[2025-12-08 22:42:56]     "pilotErrorCode": 0,
[2025-12-08 22:42:56]     "pilotErrorDiag": "",
[2025-12-08 22:42:56]  *** Listing of results directory ***
[2025-12-08 22:42:56] total 1314412
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 14:29 pilot3.tar.gz
[2025-12-08 22:42:56] -rwx------ 1 boincer umatlas     36292 Nov 21 14:40 runpilot2-wrapper.sh
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 14:40 queuedata.json
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas       100 Dec  8 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 22:42:56] -rwxr-xr-x 1 boincer umatlas      7986 Dec  8 16:13 run_atlas
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas       105 Dec  8 16:13 job.xml
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas 408579696 Dec  8 16:13 EVNT.47483658._000120.pool.root.1
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 16:13 start_atlas.sh
[2025-12-08 22:42:56] drwxrwx--x 2 boincer umatlas      4096 Dec  8 16:13 shared
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas    590096 Dec  8 16:13 input.tar.gz
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas         0 Dec  8 16:13 boinc_lockfile
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas      2786 Dec  8 16:13 pandaJob.out
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas        57 Dec  8 16:13 setup.sh.local
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas    981546 Dec  8 16:13 agis_schedconf.cvmfs.json
[2025-12-08 22:42:56] drwx------ 5 boincer umatlas      4096 Dec  8 16:13 pilot3
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas       533 Dec  8 22:32 boinc_task_state.xml
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas      5956 Dec  8 22:40 init_data.xml
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas 922681058 Dec  8 22:41 HITS.47556137._001200.pool.root.1
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas      1060 Dec  8 22:42 memory_monitor_summary.json
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas   1516240 Dec  8 22:42 agis_ddmendpoints.agis.ALL.json
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas   2136783 Dec  8 22:42 log.47556137._001200.job.log.tgz.1
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas      8664 Dec  8 22:42 heartbeat.json
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas      8192 Dec  8 22:42 boinc_mmap_file
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas        29 Dec  8 22:42 wrapper_checkpoint.txt
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas        95 Dec  8 22:42 pilot_heartbeat.json
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas       744 Dec  8 22:42 pilotlog.txt
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas   3259610 Dec  8 22:42 log.47556137._001200.job.log.1
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas       353 Dec  8 22:42 output.list
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas       620 Dec  8 22:42 runtime_log
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas   5416960 Dec  8 22:42 result.tar.gz
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas       669 Dec  8 22:42 vY2MDmnAmg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcgJKDmbBjF3m.diag
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas      9345 Dec  8 22:42 runtime_log.err
[2025-12-08 22:42:56] -rw-r--r-- 1 boincer umatlas     21261 Dec  8 22:42 stderr.txt
[2025-12-08 22:42:56] HITS file was successfully produced:
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas 922681058 Dec  8 22:41 shared/HITS.pool.root.1
[2025-12-08 22:42:56]  *** Contents of shared directory: ***
[2025-12-08 22:42:56] total 1305956
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas 408579696 Dec  8 16:13 ATLAS.root_0
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 16:13 start_atlas.sh
[2025-12-08 22:42:56] -rw-r--r-- 2 boincer umatlas    590096 Dec  8 16:13 input.tar.gz
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas 922681058 Dec  8 22:41 HITS.pool.root.1
[2025-12-08 22:42:56] -rw------- 1 boincer umatlas   5416960 Dec  8 22:42 result.tar.gz
22:42:57 (2882): run_atlas exited; CPU time 265803.747455
22:42:57 (2882): called boinc_finish(0)

</stderr_txt>
]]>

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