Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:00:11 (4045619): wrapper (7.7.26015): starting
15:00:11 (4045619): wrapper: running run_atlas (--nthreads 10)
[2025-12-08 15:00:11] Arguments: --nthreads 10
[2025-12-08 15:00:11] Threads: 10
[2025-12-08 15:00:11] Checking for CVMFS
[2025-12-08 15:00:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 15:00:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 15:00:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 15:00:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 15:00:12] 2.13.2.0 5631 51574 230792 153778 3 492 27690501 39288832 8104 16776704 0 39634339 99.681 32164790 38070 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-08 15:00:12] CVMFS is ok
[2025-12-08 15:00:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 15:00:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 15:00:12] Further information can be found at the LHC@home message board.
[2025-12-08 15:00:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 15:00:12] Checking for apptainer binary...
[2025-12-08 15:00:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 15:00:12] Running /usr/bin/apptainer --version
[2025-12-08 15:00:12] apptainer version 1.4.4-1.el9
[2025-12-08 15:00:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 15:00:12] c-210-15.aglt2.org
[2025-12-08 15:00:12] apptainer works
[2025-12-08 15:00:12] Set ATHENA_PROC_NUMBER=10
[2025-12-08 15:00:12] Set ATHENA_CORE_NUMBER=10
[2025-12-08 15:00:12] Starting ATLAS job with PandaID=6895329905
[2025-12-08 15:00:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 14:23:29]  *** The last 200 lines of the pilot log: ***
[2025-12-09 14:23:29] 2025-12-09 19:22:53,669 | INFO     | sum of square deviations: 802558511732.682
[2025-12-09 14:23:29] 2025-12-09 19:22:53,738 | INFO     | sum of deviations: 4285911310616.4106
[2025-12-09 14:23:29] 2025-12-09 19:22:53,738 | INFO     | mean x: 1765265929.9439185
[2025-12-09 14:23:29] 2025-12-09 19:22:53,738 | INFO     | mean y: 3293289.7327021123
[2025-12-09 14:23:29] 2025-12-09 19:22:53,738 | INFO     | intersect: -9423774151.192354
[2025-12-09 14:23:29] 2025-12-09 19:22:53,740 | INFO     | chi2: 10.43997199278784
[2025-12-09 14:23:29] 2025-12-09 19:22:53,741 | INFO     | current chi2=10.43997199278784 (change=26.731566543618097 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:53,743 | INFO     | sum of square deviations: 793823850589.6245
[2025-12-09 14:23:29] 2025-12-09 19:22:53,803 | INFO     | sum of deviations: 4803268487452.205
[2025-12-09 14:23:29] 2025-12-09 19:22:53,803 | INFO     | mean x: 1765265777.4583333
[2025-12-09 14:23:29] 2025-12-09 19:22:53,804 | INFO     | mean y: 3302320.959795322
[2025-12-09 14:23:29] 2025-12-09 19:22:53,804 | INFO     | intersect: -10677965915.747242
[2025-12-09 14:23:29] 2025-12-09 19:22:53,806 | INFO     | chi2: 7.3758552068424725
[2025-12-09 14:23:29] 2025-12-09 19:22:53,806 | INFO     | current chi2=7.3758552068424725 (change=29.34985637952023 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:53,808 | INFO     | sum of square deviations: 785152568464.8254
[2025-12-09 14:23:29] 2025-12-09 19:22:53,880 | INFO     | sum of deviations: 5287086493757.232
[2025-12-09 14:23:29] 2025-12-09 19:22:53,880 | INFO     | mean x: 1765265624.970653
[2025-12-09 14:23:29] 2025-12-09 19:22:53,880 | INFO     | mean y: 3310825.630961115
[2025-12-09 14:23:29] 2025-12-09 19:22:53,880 | INFO     | intersect: -11883693584.129663
[2025-12-09 14:23:29] 2025-12-09 19:22:53,882 | INFO     | chi2: 4.522234047833573
[2025-12-09 14:23:29] 2025-12-09 19:22:53,883 | INFO     | current chi2=4.522234047833573 (change=38.68868190852821 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:53,885 | INFO     | sum of square deviations: 776544932043.2068
[2025-12-09 14:23:29] 2025-12-09 19:22:53,948 | INFO     | sum of deviations: 5590596134213.878
[2025-12-09 14:23:29] 2025-12-09 19:22:53,949 | INFO     | mean x: 1765265472.4852724
[2025-12-09 14:23:29] 2025-12-09 19:22:53,949 | INFO     | mean y: 3316201.843888071
[2025-12-09 14:23:29] 2025-12-09 19:22:53,949 | INFO     | intersect: -12705396351.814625
[2025-12-09 14:23:29] 2025-12-09 19:22:53,951 | INFO     | chi2: 3.336766196143861
[2025-12-09 14:23:29] 2025-12-09 19:22:53,951 | INFO     | current chi2=3.336766196143861 (change=26.214208268535405 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:53,953 | INFO     | sum of square deviations: 767999797421.9567
[2025-12-09 14:23:29] 2025-12-09 19:22:54,034 | INFO     | sum of deviations: 5638201718648.4
[2025-12-09 14:23:29] 2025-12-09 19:22:54,034 | INFO     | mean x: 1765265319.9940872
[2025-12-09 14:23:29] 2025-12-09 19:22:54,034 | INFO     | mean y: 3317049.1751662972
[2025-12-09 14:23:29] 2025-12-09 19:22:54,035 | INFO     | intersect: -12956220172.672195
[2025-12-09 14:23:29] 2025-12-09 19:22:54,037 | INFO     | chi2: 3.1971626916784937
[2025-12-09 14:23:29] 2025-12-09 19:22:54,037 | INFO     | current chi2=3.1971626916784937 (change=4.183796414225857 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:54,037 | INFO     | right removable region: 1352
[2025-12-09 14:23:29] 2025-12-09 19:22:54,039 | INFO     | sum of square deviations: 802555208582.6814
[2025-12-09 14:23:29] 2025-12-09 19:22:54,113 | INFO     | sum of deviations: 3188217312650.442
[2025-12-09 14:23:29] 2025-12-09 19:22:54,114 | INFO     | mean x: 1765266234.9439185
[2025-12-09 14:23:29] 2025-12-09 19:22:54,114 | INFO     | mean y: 3292332.69410051
[2025-12-09 14:23:29] 2025-12-09 19:22:54,114 | INFO     | intersect: -7009374598.500137
[2025-12-09 14:23:29] 2025-12-09 19:22:54,116 | INFO     | chi2: 11.416578763985592
[2025-12-09 14:23:29] 2025-12-09 19:22:54,116 | INFO     | current chi2=11.416578763985592 (change=19.877673805401376 %)
[2025-12-09 14:23:29] 2025-12-09 19:22:54,116 | INFO     | left removable region: 10
[2025-12-09 14:23:29] 2025-12-09 19:22:54,118 | INFO     | sum of square deviations: 749417044454.9146
[2025-12-09 14:23:29] 2025-12-09 19:22:54,174 | INFO     | sum of deviations: 4982130669731.215
[2025-12-09 14:23:29] 2025-12-09 19:22:54,177 | INFO     | mean x: 1765265594.5208645
[2025-12-09 14:23:29] 2025-12-09 19:22:54,177 | INFO     | mean y: 3328563.331594635
[2025-12-09 14:23:29] 2025-12-09 19:22:54,177 | INFO     | intersect: -11732171614.784258
[2025-12-09 14:23:29] 2025-12-09 19:22:54,179 | INFO     | chi2: 0.22799678571900464
[2025-12-09 14:23:29] 2025-12-09 19:22:54,179 | INFO     | current memory leak: 6.65 B/s (using 1342 data points, chi2=0.23)
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | could have reported an average CPU frequency of 2599 MHz (49 samples)
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | ..............................
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | . Timing measurements:
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | . get job = 0 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | . initial setup = 3 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | . payload setup = 11 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,181 | INFO     | . stage-in = 0 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,182 | INFO     | . payload execution = 84031 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,182 | INFO     | . stage-out = 19 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,182 | INFO     | . log creation = 6 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,182 | INFO     | ..............................
[2025-12-09 14:23:29] 2025-12-09 19:22:54,386 | INFO     | PID=4049311 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-09 14:23:29] 2025-12-09 19:22:54,387 | INFO     | .. there are 7 such processes running
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | 
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | job summary report
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | --------------------------------------------------
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | PanDA job id: 6895329905
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | task id: 47556137
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | errors: (none)
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 14:23:29] 2025-12-09 19:22:54,770 | INFO     | pilot state: finished 
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | transexitcode: 0
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | exeerrorcode: 0
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | exeerrordiag: 
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | exitcode: 0
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | exitmsg: OK
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | cpuconsumptiontime: 305524 s
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | nevents: 1000
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | neventsw: 0
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | pid: 4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | pgrp: 4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | corecount: 10
[2025-12-09 14:23:29] 2025-12-09 19:22:54,771 | INFO     | event service: False
[2025-12-09 14:23:29] 2025-12-09 19:22:54,772 | INFO     | sizes: {0: 2284082, 1: 2284337, 10: 2284599, 12: 2284627, 84048: 2348405, 84049: 2348404, 84070: 2357582, 84073: 2357638, 84119: 2357884}
[2025-12-09 14:23:29] 2025-12-09 19:22:54,798 | INFO     | --------------------------------------------------
[2025-12-09 14:23:29] 2025-12-09 19:22:54,798 | INFO     | 
[2025-12-09 14:23:29] 2025-12-09 19:22:54,798 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 14:23:29] 2025-12-09 19:22:55,165 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,165 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 14:23:29] 2025-12-09 19:22:55,167 | INFO     | job 6895329905 has completed (purged errors)
[2025-12-09 14:23:29] 2025-12-09 19:22:55,172 | INFO     | overall cleanup function is called
[2025-12-09 14:23:29] 2025-12-09 19:22:56,205 | INFO     | --- collectZombieJob: --- 10, [4055762]
[2025-12-09 14:23:29] 2025-12-09 19:22:56,209 | INFO     | zombie collector waiting for pid 4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:56,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 14:23:29] 2025-12-09 19:22:56,210 | INFO     | collected zombie processes
[2025-12-09 14:23:29] 2025-12-09 19:22:56,210 | INFO     | will attempt to kill all subprocesses of pid=4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:57,386 | INFO     | process IDs to be killed: [4055762] (in reverse order)
[2025-12-09 14:23:29] 2025-12-09 19:22:58,009 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 14:23:29] 2025-12-09 19:22:58,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 14:23:29] 2025-12-09 19:22:58,019 | INFO     | did not find any defunct processes belonging to 4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:58,028 | INFO     | did not find any defunct processes belonging to 4055762
[2025-12-09 14:23:29] 2025-12-09 19:22:58,030 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 14:23:29] 2025-12-09 19:22:58,031 | INFO     | ready for new job
[2025-12-09 14:23:29] 2025-12-09 19:22:58,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 14:23:29] 2025-12-09 19:22:58,038 | INFO     | ***************************************
[2025-12-09 14:23:29] 2025-12-09 19:22:58,039 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 14:23:29] 2025-12-09 19:22:58,039 | INFO     | ***************************************
[2025-12-09 14:23:29] 2025-12-09 19:22:58,039 | INFO     | 
[2025-12-09 14:23:29] 2025-12-09 19:22:58,041 | INFO     | architecture information:
[2025-12-09 14:23:29] 2025-12-09 19:22:58,042 | INFO     | executing command: cat /etc/os-release
[2025-12-09 14:23:29] 2025-12-09 19:22:58,063 | INFO     | cat /etc/os-release:
[2025-12-09 14:23:29] NAME="CentOS Linux"
[2025-12-09 14:23:29] VERSION="7 (Core)"
[2025-12-09 14:23:29] ID="centos"
[2025-12-09 14:23:29] ID_LIKE="rhel fedora"
[2025-12-09 14:23:29] VERSION_ID="7"
[2025-12-09 14:23:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 14:23:29] ANSI_COLOR="0;31"
[2025-12-09 14:23:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 14:23:29] HOME_URL="https://www.centos.org/"
[2025-12-09 14:23:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 14:23:29] 
[2025-12-09 14:23:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 14:23:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 14:23:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 14:23:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 14:23:29] 
[2025-12-09 14:23:29] 2025-12-09 19:22:58,063 | INFO     | ***************************************
[2025-12-09 14:23:29] 2025-12-09 19:22:58,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 14:23:29] 2025-12-09 19:22:58,690 | INFO     | sufficient remaining disk space (51636076544 B)
[2025-12-09 14:23:29] 2025-12-09 19:22:58,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 14:23:29] 2025-12-09 19:22:58,690 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 14:23:29] 2025-12-09 19:22:58,690 | INFO     | update_server=False
[2025-12-09 14:23:29] 2025-12-09 19:22:58,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 14:23:29] 2025-12-09 19:22:58,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 14:23:29] 2025-12-09 19:22:58,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:23:29] 2025-12-09 19:22:58,782 | INFO     | aborting loop
[2025-12-09 14:23:29] 2025-12-09 19:22:59,238 | INFO     | all payload control threads have been joined
[2025-12-09 14:23:29] 2025-12-09 19:22:59,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 14:23:29] 2025-12-09 19:22:59,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:23:29] 2025-12-09 19:22:59,658 | INFO     | all job control threads have been joined
[2025-12-09 14:23:29] 2025-12-09 19:22:59,677 | INFO     | all data control threads have been joined
[2025-12-09 14:23:29] 2025-12-09 19:22:59,697 | INFO     | [job] retrieve thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:22:59,795 | INFO     | [job] job monitor thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:22:59,992 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,244 | INFO     | [payload] control thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,298 | INFO     | [payload] failed_post thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,439 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,474 | INFO     | [job] queue monitor thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,494 | INFO     | [data] copytool_in thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,640 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,675 | INFO     | [job] control thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,683 | INFO     | [data] control thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,702 | INFO     | [data] copytool_out thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,814 | INFO     | [payload] validate_post thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:00,891 | INFO     | [job] validate thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:03,408 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 14:23:29] 2025-12-09 19:23:10,415 | INFO     | [monitor] cgroup control has ended
[2025-12-09 14:23:29] 2025-12-09 19:23:12,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554069178176)>', '<ExcThread(monitor, started 140553190627072)>']
[2025-12-09 14:23:29] 2025-12-09 19:23:17,499 | INFO     | all workflow threads have been joined
[2025-12-09 14:23:29] 2025-12-09 19:23:17,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 14:23:29] 2025-12-09 19:23:17,508 | INFO     | traces error code: 0
[2025-12-09 14:23:29] 2025-12-09 19:23:17,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 14:23:29] 2025-12-09 19:23:27,207 | INFO     | PID=4049311 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-09 14:23:29] 2025-12-09 19:23:27,207 | INFO     | .. there are 7 such processes running
[2025-12-09 14:23:29] 2025-12-09 19:23:27,207 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 14:23:29] 2025-12-09 19:23:27,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 14:23:29] 2025-12-09 19:23:27,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 14:23:29] 2025-12-09 19:23:27,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 14:23:29] 2025-12-09 19:23:27,208 | INFO     | [monitor] control thread has ended
[2025-12-09 14:23:29] 2025-12-09 19:23:27,722 [wrapper] ==== pilot stdout END ====
[2025-12-09 14:23:29] 2025-12-09 19:23:27,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 14:23:29] 2025-12-09 19:23:27,738 [wrapper] pilotpid: 4049311
[2025-12-09 14:23:29] 2025-12-09 19:23:27,741 [wrapper] Pilot exit status: 0
[2025-12-09 14:23:29] 2025-12-09 19:23:27,873 [wrapper] pandaids: 6895329905
[2025-12-09 14:23:29] 2025-12-09 19:23:28,514 [wrapper] cleanup supervisor_pilot 1524367 4049312
[2025-12-09 14:23:29] 2025-12-09 19:23:28,561 [wrapper] Test setup, not cleaning
[2025-12-09 14:23:29] 2025-12-09 19:23:28,603 [wrapper] apfmon messages muted
[2025-12-09 14:23:29] 2025-12-09 19:23:28,654 [wrapper] ==== wrapper stdout END ====
[2025-12-09 14:23:29] 2025-12-09 19:23:28,703 [wrapper] ==== wrapper stderr END ====
[2025-12-09 14:23:29]  *** Error codes and diagnostics ***
[2025-12-09 14:23:29]     "exeErrorCode": 0,
[2025-12-09 14:23:29]     "exeErrorDiag": "",
[2025-12-09 14:23:29]     "pilotErrorCode": 0,
[2025-12-09 14:23:29]     "pilotErrorDiag": "",
[2025-12-09 14:23:29]  *** Listing of results directory ***
[2025-12-09 14:23:29] total 1331140
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:48 pilot3.tar.gz
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:51 queuedata.json
[2025-12-09 14:23:29] -rwx------. 1 boincer umatlas     36292 Nov 21 14:55 runpilot2-wrapper.sh
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas       100 Dec  8 15:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 14:23:29] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  8 15:00 run_atlas
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas       105 Dec  8 15:00 job.xml
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas 410040968 Dec  8 15:00 EVNT.47483658._000128.pool.root.1
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 15:00 start_atlas.sh
[2025-12-09 14:23:29] drwxrwx--x. 2 boincer umatlas      4096 Dec  8 15:00 shared
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas    590101 Dec  8 15:00 input.tar.gz
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas         0 Dec  8 15:00 boinc_lockfile
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      2783 Dec  8 15:00 pandaJob.out
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas        57 Dec  8 15:00 setup.sh.local
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas    981538 Dec  8 15:00 agis_schedconf.cvmfs.json
[2025-12-09 14:23:29] drwx------. 5 boincer umatlas      4096 Dec  8 15:00 pilot3
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas       533 Dec  9 13:57 boinc_task_state.xml
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas 922902949 Dec  9 14:19 HITS.47556137._001271.pool.root.1
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas      1069 Dec  9 14:21 memory_monitor_summary.json
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas   1516240 Dec  9 14:21 agis_ddmendpoints.agis.ALL.json
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas   2637863 Dec  9 14:22 log.47556137._001271.job.log.tgz.1
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      6661 Dec  9 14:22 init_data.xml
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas        95 Dec  9 14:22 pilot_heartbeat.json
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas      8655 Dec  9 14:22 heartbeat.json
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas        29 Dec  9 14:23 wrapper_checkpoint.txt
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      8192 Dec  9 14:23 boinc_mmap_file
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas       822 Dec  9 14:23 pilotlog.txt
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas  10491435 Dec  9 14:23 log.47556137._001271.job.log.1
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas       353 Dec  9 14:23 output.list
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas       620 Dec  9 14:23 runtime_log
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas  13148160 Dec  9 14:23 result.tar.gz
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      9345 Dec  9 14:23 runtime_log.err
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas       665 Dec  9 14:23 IPGLDmuOmg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXnHKDmtGqt9n.diag
[2025-12-09 14:23:29] -rw-r--r--. 1 boincer umatlas      2077 Dec  9 14:23 stderr.txt
[2025-12-09 14:23:29] HITS file was successfully produced:
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas 922902949 Dec  9 14:19 shared/HITS.pool.root.1
[2025-12-09 14:23:29]  *** Contents of shared directory: ***
[2025-12-09 14:23:29] total 1315148
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas 410040968 Dec  8 15:00 ATLAS.root_0
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 15:00 start_atlas.sh
[2025-12-09 14:23:29] -rw-r--r--. 2 boincer umatlas    590101 Dec  8 15:00 input.tar.gz
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas 922902949 Dec  9 14:19 HITS.pool.root.1
[2025-12-09 14:23:29] -rw-------. 1 boincer umatlas  13148160 Dec  9 14:23 result.tar.gz
14:23:31 (4045619): run_atlas exited; CPU time 306211.502273
14:23:31 (4045619): called boinc_finish(0)

</stderr_txt>
]]>

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