Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:58:08 (1856003): wrapper (7.7.26015): starting
14:58:08 (1856003): wrapper: running run_atlas (--nthreads 10)
[2025-12-08 14:58:08] Arguments: --nthreads 10
[2025-12-08 14:58:08] Threads: 10
[2025-12-08 14:58:08] Checking for CVMFS
[2025-12-08 14:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 14:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 14:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 14:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 14:58:09] 2.13.3.0 25561 4397 158708 153778 2 354 40513252 40960000 13274 16776704 0 7485955 99.565 6217441 29688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-08 14:58:09] CVMFS is ok
[2025-12-08 14:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 14:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 14:58:09] Further information can be found at the LHC@home message board.
[2025-12-08 14:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 14:58:09] Checking for apptainer binary...
[2025-12-08 14:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 14:58:09] Running /usr/bin/apptainer --version
[2025-12-08 14:58:09] apptainer version 1.4.4-1.el9
[2025-12-08 14:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 14:58:10] c7-11-15.aglt2.org
[2025-12-08 14:58:10] apptainer works
[2025-12-08 14:58:10] Set ATHENA_PROC_NUMBER=10
[2025-12-08 14:58:10] Set ATHENA_CORE_NUMBER=10
[2025-12-08 14:58:10] Starting ATLAS job with PandaID=6894289748
[2025-12-08 14:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 14:20:15]  *** The last 200 lines of the pilot log: ***
[2025-12-09 14:20:15] 2025-12-09 19:19:39,851 | INFO     | monitor loop #5415: job 0:6894289748 is in state 'finished'
[2025-12-09 14:20:15] 2025-12-09 19:19:39,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:20:15] 2025-12-09 19:19:40,577 | INFO     | time since job start (84060s) is within the limit (172800.0s)
[2025-12-09 14:20:15] 2025-12-09 19:19:40,889 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-09 14:20:15] 2025-12-09 19:19:40,893 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.1779375
[2025-12-09 14:20:15] 2025-12-09 19:19:40,902 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894289748/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 14:20:15] 2025-12-09 19:19:40,903 | INFO     | extracted standard info from prmon json
[2025-12-09 14:20:15] 2025-12-09 19:19:40,903 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 14:20:15] 2025-12-09 19:19:40,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 14:20:15] 2025-12-09 19:19:40,920 | INFO     | fitting pss+swap vs Time
[2025-12-09 14:20:15] 2025-12-09 19:19:40,922 | INFO     | sum of square deviations: 809614767470.4945
[2025-12-09 14:20:15] 2025-12-09 19:19:40,955 | INFO     | sum of deviations: 4841546125787.209
[2025-12-09 14:20:15] 2025-12-09 19:19:40,955 | INFO     | mean x: 1765265951.6419754
[2025-12-09 14:20:15] 2025-12-09 19:19:40,955 | INFO     | mean y: 3312537.8198983297
[2025-12-09 14:20:15] 2025-12-09 19:19:40,955 | INFO     | intersect: -10553086471.37647
[2025-12-09 14:20:15] 2025-12-09 19:19:40,956 | INFO     | chi2: 6.452132804684275
[2025-12-09 14:20:15] 2025-12-09 19:19:40,957 | INFO     | sum of square deviations: 800828073696.9635
[2025-12-09 14:20:15] 2025-12-09 19:19:40,992 | INFO     | sum of deviations: 5269822094060.123
[2025-12-09 14:20:15] 2025-12-09 19:19:40,992 | INFO     | mean x: 1765265799.1479592
[2025-12-09 14:20:15] 2025-12-09 19:19:40,992 | INFO     | mean y: 3319967.472303207
[2025-12-09 14:20:15] 2025-12-09 19:19:40,992 | INFO     | intersect: -11612952008.725636
[2025-12-09 14:20:15] 2025-12-09 19:19:40,994 | INFO     | chi2: 4.2712498565437755
[2025-12-09 14:20:15] 2025-12-09 19:19:40,994 | INFO     | current chi2=4.2712498565437755 (change=33.800961854926015 %)
[2025-12-09 14:20:15] 2025-12-09 19:19:40,995 | INFO     | sum of square deviations: 792104693297.1575
[2025-12-09 14:20:15] 2025-12-09 19:19:41,029 | INFO     | sum of deviations: 5327959748163.748
[2025-12-09 14:20:15] 2025-12-09 19:19:41,030 | INFO     | mean x: 1765265646.6495976
[2025-12-09 14:20:15] 2025-12-09 19:19:41,030 | INFO     | mean y: 3320981.3606437454
[2025-12-09 14:20:15] 2025-12-09 19:19:41,030 | INFO     | intersect: -11870443168.445913
[2025-12-09 14:20:15] 2025-12-09 19:19:41,031 | INFO     | chi2: 4.093794836713586
[2025-12-09 14:20:15] 2025-12-09 19:19:41,031 | INFO     | current chi2=4.093794836713586 (change=4.154639175657658 %)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,031 | INFO     | right removable region: 1366
[2025-12-09 14:20:15] 2025-12-09 19:19:41,032 | INFO     | sum of square deviations: 800826694486.9635
[2025-12-09 14:20:15] 2025-12-09 19:19:41,064 | INFO     | sum of deviations: 4273612201282.4556
[2025-12-09 14:20:15] 2025-12-09 19:19:41,065 | INFO     | mean x: 1765266104.1479592
[2025-12-09 14:20:15] 2025-12-09 19:19:41,065 | INFO     | mean y: 3322390.6282798834
[2025-12-09 14:20:15] 2025-12-09 19:19:41,065 | INFO     | intersect: -9417021378.044472
[2025-12-09 14:20:15] 2025-12-09 19:19:41,066 | INFO     | chi2: 3.138888622853365
[2025-12-09 14:20:15] 2025-12-09 19:19:41,066 | INFO     | current chi2=3.138888622853365 (change=51.35114670028926 %)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,067 | INFO     | sum of square deviations: 792103022383.4558
[2025-12-09 14:20:15] 2025-12-09 19:19:41,098 | INFO     | sum of deviations: 4117747707330.419
[2025-12-09 14:20:15] 2025-12-09 19:19:41,099 | INFO     | mean x: 1765266256.6488662
[2025-12-09 14:20:15] 2025-12-09 19:19:41,099 | INFO     | mean y: 3325114.7841989757
[2025-12-09 14:20:15] 2025-12-09 19:19:41,099 | INFO     | intersect: -9173411844.596758
[2025-12-09 14:20:15] 2025-12-09 19:19:41,100 | INFO     | chi2: 2.999573956926298
[2025-12-09 14:20:15] 2025-12-09 19:19:41,100 | INFO     | current chi2=2.999573956926298 (change=4.438343715439793 %)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,100 | INFO     | left removable region: 20
[2025-12-09 14:20:15] 2025-12-09 19:19:41,101 | INFO     | sum of square deviations: 756156945679.7787
[2025-12-09 14:20:15] 2025-12-09 19:19:41,130 | INFO     | sum of deviations: 4403477434893.479
[2025-12-09 14:20:15] 2025-12-09 19:19:41,130 | INFO     | mean x: 1765266226.1523032
[2025-12-09 14:20:15] 2025-12-09 19:19:41,131 | INFO     | mean y: 3337344.1196136703
[2025-12-09 14:20:15] 2025-12-09 19:19:41,131 | INFO     | intersect: -10276684598.220802
[2025-12-09 14:20:15] 2025-12-09 19:19:41,132 | INFO     | chi2: 0.5589065926651374
[2025-12-09 14:20:15] 2025-12-09 19:19:41,132 | INFO     | current memory leak: 5.82 B/s (using 1346 data points, chi2=0.56)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,133 | INFO     | could have reported an average CPU frequency of 3280 MHz (50 samples)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | ..............................
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . Timing measurements:
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . get job = 0 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . initial setup = 4 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . payload setup = 18 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . stage-in = 0 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . payload execution = 83993 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . stage-out = 3 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | . log creation = 0 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,134 | INFO     | ..............................
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | 
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | job summary report
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | --------------------------------------------------
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | PanDA job id: 6894289748
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | task id: 47533967
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | errors: (none)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | pilot state: finished 
[2025-12-09 14:20:15] 2025-12-09 19:19:41,219 | INFO     | transexitcode: 0
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | exeerrorcode: 0
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | exeerrordiag: 
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | exitcode: 0
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | exitmsg: OK
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | cpuconsumptiontime: 201056 s
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | nevents: 1000
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | neventsw: 0
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | pid: 1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | pgrp: 1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | corecount: 10
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | event service: False
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 14: 2284582, 23: 2284610, 84016: 2349506, 84019: 2358500, 84021: 2358556, 84029: 2358802}
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | --------------------------------------------------
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | 
[2025-12-09 14:20:15] 2025-12-09 19:19:41,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 14:20:15] 2025-12-09 19:19:41,241 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,241 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | job 6894289748 has completed (purged errors)
[2025-12-09 14:20:15] 2025-12-09 19:19:41,243 | INFO     | overall cleanup function is called
[2025-12-09 14:20:15] 2025-12-09 19:19:42,263 | INFO     | --- collectZombieJob: --- 10, [1867529]
[2025-12-09 14:20:15] 2025-12-09 19:19:42,263 | INFO     | zombie collector waiting for pid 1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:42,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 14:20:15] 2025-12-09 19:19:42,263 | INFO     | collected zombie processes
[2025-12-09 14:20:15] 2025-12-09 19:19:42,263 | INFO     | will attempt to kill all subprocesses of pid=1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:42,532 | INFO     | process IDs to be killed: [1867529] (in reverse order)
[2025-12-09 14:20:15] 2025-12-09 19:19:42,645 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 14:20:15] 2025-12-09 19:19:42,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 14:20:15] 2025-12-09 19:19:42,660 | INFO     | did not find any defunct processes belonging to 1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:42,673 | INFO     | did not find any defunct processes belonging to 1867529
[2025-12-09 14:20:15] 2025-12-09 19:19:42,674 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 14:20:15] 2025-12-09 19:19:42,674 | INFO     | ready for new job
[2025-12-09 14:20:15] 2025-12-09 19:19:42,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 14:20:15] 2025-12-09 19:19:42,681 | INFO     | ***************************************
[2025-12-09 14:20:15] 2025-12-09 19:19:42,681 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 14:20:15] 2025-12-09 19:19:42,682 | INFO     | ***************************************
[2025-12-09 14:20:15] 2025-12-09 19:19:42,682 | INFO     | 
[2025-12-09 14:20:15] 2025-12-09 19:19:42,685 | INFO     | architecture information:
[2025-12-09 14:20:15] 2025-12-09 19:19:42,686 | INFO     | executing command: cat /etc/os-release
[2025-12-09 14:20:15] 2025-12-09 19:19:42,702 | INFO     | cat /etc/os-release:
[2025-12-09 14:20:15] NAME="CentOS Linux"
[2025-12-09 14:20:15] VERSION="7 (Core)"
[2025-12-09 14:20:15] ID="centos"
[2025-12-09 14:20:15] ID_LIKE="rhel fedora"
[2025-12-09 14:20:15] VERSION_ID="7"
[2025-12-09 14:20:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 14:20:15] ANSI_COLOR="0;31"
[2025-12-09 14:20:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 14:20:15] HOME_URL="https://www.centos.org/"
[2025-12-09 14:20:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 14:20:15] 
[2025-12-09 14:20:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 14:20:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 14:20:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 14:20:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 14:20:15] 
[2025-12-09 14:20:15] 2025-12-09 19:19:42,702 | INFO     | ***************************************
[2025-12-09 14:20:15] 2025-12-09 19:19:43,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 14:20:15] 2025-12-09 19:19:43,228 | INFO     | sufficient remaining disk space (82094063616 B)
[2025-12-09 14:20:15] 2025-12-09 19:19:43,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 14:20:15] 2025-12-09 19:19:43,228 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 14:20:15] 2025-12-09 19:19:43,229 | INFO     | update_server=False
[2025-12-09 14:20:15] 2025-12-09 19:19:43,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 14:20:15] 2025-12-09 19:19:43,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 14:20:15] 2025-12-09 19:19:43,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:20:15] 2025-12-09 19:19:43,363 | INFO     | aborting loop
[2025-12-09 14:20:15] 2025-12-09 19:19:43,405 | INFO     | all data control threads have been joined
[2025-12-09 14:20:15] 2025-12-09 19:19:43,749 | INFO     | all job control threads have been joined
[2025-12-09 14:20:15] 2025-12-09 19:19:43,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 14:20:15] 2025-12-09 19:19:44,229 | INFO     | [job] retrieve thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,264 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,368 | INFO     | [job] job monitor thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,411 | INFO     | [data] control thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,585 | INFO     | [data] copytool_in thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,624 | INFO     | all payload control threads have been joined
[2025-12-09 14:20:15] 2025-12-09 19:19:44,739 | INFO     | [job] validate thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,754 | INFO     | [job] control thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,868 | INFO     | [payload] failed_post thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:44,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:45,249 | INFO     | [data] copytool_out thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:45,494 | INFO     | [payload] validate_post thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:45,630 | INFO     | [payload] control thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:45,660 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:45,694 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:46,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:20:15] 2025-12-09 19:19:47,236 | INFO     | [job] queue monitor thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:19:47,778 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 14:20:15] 2025-12-09 19:20:08,891 | INFO     | [monitor] cgroup control has ended
[2025-12-09 14:20:15] 2025-12-09 19:20:09,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639889712960)>', '<ExcThread(monitor, started 140639350015744)>']
[2025-12-09 14:20:15] 2025-12-09 19:20:14,066 | INFO     | PID=1860507 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-09 14:20:15] 2025-12-09 19:20:14,068 | INFO     | .. there are 10 such processes running
[2025-12-09 14:20:15] 2025-12-09 19:20:14,069 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 14:20:15] 2025-12-09 19:20:14,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 14:20:15] 2025-12-09 19:20:14,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 14:20:15] 2025-12-09 19:20:14,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 14:20:15] 2025-12-09 19:20:14,070 | INFO     | [monitor] control thread has ended
[2025-12-09 14:20:15] 2025-12-09 19:20:14,537 | INFO     | all workflow threads have been joined
[2025-12-09 14:20:15] 2025-12-09 19:20:14,537 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 14:20:15] 2025-12-09 19:20:14,538 | INFO     | traces error code: 0
[2025-12-09 14:20:15] 2025-12-09 19:20:14,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 14:20:15] 2025-12-09 19:20:14,819 [wrapper] ==== pilot stdout END ====
[2025-12-09 14:20:15] 2025-12-09 19:20:14,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 14:20:15] 2025-12-09 19:20:14,825 [wrapper] pilotpid: 1860507
[2025-12-09 14:20:15] 2025-12-09 19:20:14,827 [wrapper] Pilot exit status: 0
[2025-12-09 14:20:15] 2025-12-09 19:20:14,857 [wrapper] pandaids: 6894289748
[2025-12-09 14:20:15] 2025-12-09 19:20:14,933 [wrapper] cleanup supervisor_pilot  664133 1860508
[2025-12-09 14:20:15] 2025-12-09 19:20:14,937 [wrapper] Test setup, not cleaning
[2025-12-09 14:20:15] 2025-12-09 19:20:14,939 [wrapper] apfmon messages muted
[2025-12-09 14:20:15] 2025-12-09 19:20:14,941 [wrapper] ==== wrapper stdout END ====
[2025-12-09 14:20:15] 2025-12-09 19:20:14,944 [wrapper] ==== wrapper stderr END ====
[2025-12-09 14:20:15]  *** Error codes and diagnostics ***
[2025-12-09 14:20:15]     "exeErrorCode": 0,
[2025-12-09 14:20:15]     "exeErrorDiag": "",
[2025-12-09 14:20:15]     "pilotErrorCode": 0,
[2025-12-09 14:20:15]     "pilotErrorDiag": "",
[2025-12-09 14:20:15]  *** Listing of results directory ***
[2025-12-09 14:20:15] total 1326592
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 06:32 pilot3.tar.gz
[2025-12-09 14:20:15] -rwx------. 1 boincer umatlas     36292 Nov 21 06:34 runpilot2-wrapper.sh
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:34 queuedata.json
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas       100 Dec  8 14:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 14:20:15] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  8 14:58 run_atlas
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas       105 Dec  8 14:58 job.xml
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas 411196552 Dec  8 14:58 EVNT.47493127._002414.pool.root.1
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 14:58 start_atlas.sh
[2025-12-09 14:20:15] drwxrwx--x. 2 boincer umatlas      4096 Dec  8 14:58 shared
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas    590101 Dec  8 14:58 input.tar.gz
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas         0 Dec  8 14:58 boinc_lockfile
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas      2785 Dec  8 14:58 pandaJob.out
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas        57 Dec  8 14:58 setup.sh.local
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas    981538 Dec  8 14:58 agis_schedconf.cvmfs.json
[2025-12-09 14:20:15] drwx------. 5 boincer umatlas      4096 Dec  8 14:58 pilot3
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas       533 Dec  9 14:07 boinc_task_state.xml
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas      6907 Dec  9 14:09 init_data.xml
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas 915918380 Dec  9 14:18 HITS.47533967._003860.pool.root.1
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas      1047 Dec  9 14:19 memory_monitor_summary.json
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas   1516240 Dec  9 14:19 agis_ddmendpoints.agis.ALL.json
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas   2654779 Dec  9 14:19 log.47533967._003860.job.log.tgz.1
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas      8587 Dec  9 14:19 heartbeat.json
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas        29 Dec  9 14:20 wrapper_checkpoint.txt
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas      8192 Dec  9 14:20 boinc_mmap_file
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas        95 Dec  9 14:20 pilot_heartbeat.json
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas      4824 Dec  9 14:20 pilotlog.txt
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas  11050423 Dec  9 14:20 log.47533967._003860.job.log.1
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas       353 Dec  9 14:20 output.list
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas       620 Dec  9 14:20 runtime_log
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas  13721600 Dec  9 14:20 result.tar.gz
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas       661 Dec  9 14:20 vPfKDmlaeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsZHKDmAMnL8m.diag
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas      9345 Dec  9 14:20 runtime_log.err
[2025-12-09 14:20:15] -rw-r--r--. 1 boincer umatlas     21352 Dec  9 14:20 stderr.txt
[2025-12-09 14:20:15] HITS file was successfully produced:
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas 915918380 Dec  9 14:18 shared/HITS.pool.root.1
[2025-12-09 14:20:15]  *** Contents of shared directory: ***
[2025-12-09 14:20:15] total 1310016
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas 411196552 Dec  8 14:58 ATLAS.root_0
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas     15847 Dec  8 14:58 start_atlas.sh
[2025-12-09 14:20:15] -rw-r--r--. 2 boincer umatlas    590101 Dec  8 14:58 input.tar.gz
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas 915918380 Dec  9 14:18 HITS.pool.root.1
[2025-12-09 14:20:15] -rw-------. 1 boincer umatlas  13721600 Dec  9 14:20 result.tar.gz
14:20:16 (1856003): run_atlas exited; CPU time 201077.413734
14:20:16 (1856003): called boinc_finish(0)

</stderr_txt>
]]>

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