Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:09 (2139539): wrapper (7.7.26015): starting
19:30:09 (2139539): wrapper: running run_atlas (--nthreads 4)
[2025-12-08 19:30:09] Arguments: --nthreads 4
[2025-12-08 19:30:09] Threads: 4
[2025-12-08 19:30:09] Checking for CVMFS
[2025-12-08 19:30:09] No cvmfs_config command found, will try listing directly
[2025-12-08 19:30:09] CVMFS is ok
[2025-12-08 19:30:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 19:30:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 19:30:09] Further information can be found at the LHC@home message board.
[2025-12-08 19:30:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 19:30:09] Checking for apptainer binary...
[2025-12-08 19:30:09] which: no apptainer in ((null))
[2025-12-08 19:30:09] apptainer is not installed, using version from CVMFS
[2025-12-08 19:30:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 19:30:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-08 19:30:09] apptainer works
[2025-12-08 19:30:09] Set ATHENA_PROC_NUMBER=4
[2025-12-08 19:30:09] Set ATHENA_CORE_NUMBER=4
[2025-12-08 19:30:09] Starting ATLAS job with PandaID=6894257907
[2025-12-08 19:30:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 10:47:56]  *** The last 200 lines of the pilot log: ***
[2025-12-09 10:47:56] 2025-12-09 09:33:03,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 10:47:56] 2025-12-09 09:33:04,978 | INFO     | time since job start (54162s) is within the limit (172800.0s)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,071 | INFO     | monitor loop #3912: job 0:6894257907 is in state 'finished'
[2025-12-09 10:47:56] 2025-12-09 09:33:06,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,133 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-09 10:47:56] 2025-12-09 09:33:06,143 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2832.4551874999997
[2025-12-09 10:47:56] 2025-12-09 09:33:06,156 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6894257907/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,157 | INFO     | extracted standard info from prmon json
[2025-12-09 10:47:56] 2025-12-09 09:33:06,157 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 10:47:56] 2025-12-09 09:33:06,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 10:47:56] 2025-12-09 09:33:06,173 | INFO     | fitting pss+swap vs Time
[2025-12-09 10:47:56] 2025-12-09 09:33:06,174 | INFO     | sum of square deviations: 217128469222.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,192 | INFO     | sum of deviations: 650164660477.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,193 | INFO     | mean x: 1765245702.5
[2025-12-09 10:47:56] 2025-12-09 09:33:06,193 | INFO     | mean y: 2328528.186936937
[2025-12-09 10:47:56] 2025-12-09 09:33:06,193 | INFO     | intersect: -5283483953.873835
[2025-12-09 10:47:56] 2025-12-09 09:33:06,194 | INFO     | chi2: 4.661298824573564
[2025-12-09 10:47:56] 2025-12-09 09:33:06,196 | INFO     | sum of square deviations: 213481368282.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,212 | INFO     | sum of deviations: 882569903636.0001
[2025-12-09 10:47:56] 2025-12-09 09:33:06,212 | INFO     | mean x: 1765245550.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,213 | INFO     | mean y: 2338247.2559456397
[2025-12-09 10:47:56] 2025-12-09 09:33:06,213 | INFO     | intersect: -7295500470.450732
[2025-12-09 10:47:56] 2025-12-09 09:33:06,214 | INFO     | chi2: 1.7499120263342713
[2025-12-09 10:47:56] 2025-12-09 09:33:06,214 | INFO     | current chi2=1.7499120263342713 (change=62.45870320287048 %)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,215 | INFO     | sum of square deviations: 209875337879.5
[2025-12-09 10:47:56] 2025-12-09 09:33:06,231 | INFO     | sum of deviations: 878139474520.4991
[2025-12-09 10:47:56] 2025-12-09 09:33:06,232 | INFO     | mean x: 1765245397.5
[2025-12-09 10:47:56] 2025-12-09 09:33:06,232 | INFO     | mean y: 2338058.438496583
[2025-12-09 10:47:56] 2025-12-09 09:33:06,232 | INFO     | intersect: -7383625825.752547
[2025-12-09 10:47:56] 2025-12-09 09:33:06,233 | INFO     | chi2: 1.738807931482192
[2025-12-09 10:47:56] 2025-12-09 09:33:06,233 | INFO     | current chi2=1.738807931482192 (change=0.6345516051649891 %)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,233 | INFO     | right removable region: 877
[2025-12-09 10:47:56] 2025-12-09 09:33:06,235 | INFO     | sum of square deviations: 213481368282.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,251 | INFO     | sum of deviations: 497261808241.9999
[2025-12-09 10:47:56] 2025-12-09 09:33:06,251 | INFO     | mean x: 1765245855.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,251 | INFO     | mean y: 2334908.7214043033
[2025-12-09 10:47:56] 2025-12-09 09:33:06,251 | INFO     | intersect: -4109449425.963354
[2025-12-09 10:47:56] 2025-12-09 09:33:06,252 | INFO     | chi2: 3.0493576886641938
[2025-12-09 10:47:56] 2025-12-09 09:33:06,253 | INFO     | current chi2=3.0493576886641938 (change=34.58137305875981 %)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,254 | INFO     | sum of square deviations: 209875337879.5
[2025-12-09 10:47:56] 2025-12-09 09:33:06,270 | INFO     | sum of deviations: 486371634646.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,270 | INFO     | mean x: 1765246007.5
[2025-12-09 10:47:56] 2025-12-09 09:33:06,270 | INFO     | mean y: 2335368.5854214123
[2025-12-09 10:47:56] 2025-12-09 09:33:06,270 | INFO     | intersect: -4088500624.317403
[2025-12-09 10:47:56] 2025-12-09 09:33:06,271 | INFO     | chi2: 3.0480837584129934
[2025-12-09 10:47:56] 2025-12-09 09:33:06,272 | INFO     | current chi2=3.0480837584129934 (change=0.0417770029385576 %)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,272 | INFO     | left removable region: 20
[2025-12-09 10:47:56] 2025-12-09 09:33:06,273 | INFO     | sum of square deviations: 195173251988.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,288 | INFO     | sum of deviations: 705379816001.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,288 | INFO     | mean x: 1765245977.0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,288 | INFO     | mean y: 2345215.9871645276
[2025-12-09 10:47:56] 2025-12-09 09:33:06,288 | INFO     | intersect: -6377467948.82767
[2025-12-09 10:47:56] 2025-12-09 09:33:06,290 | INFO     | chi2: 0.0976053383466599
[2025-12-09 10:47:56] 2025-12-09 09:33:06,290 | INFO     | current memory leak: 3.61 B/s (using 857 data points, chi2=0.10)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,291 | INFO     | could have reported an average CPU frequency of 2789 MHz (33 samples)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,291 | INFO     | ..............................
[2025-12-09 10:47:56] 2025-12-09 09:33:06,291 | INFO     | . Timing measurements:
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . get job = 0 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . initial setup = 1 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . payload setup = 6 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . stage-in = 0 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . payload execution = 54123 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . stage-out = 2 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | . log creation = 0 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,292 | INFO     | ..............................
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | 
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | job summary report
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | --------------------------------------------------
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | PanDA job id: 6894257907
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | task id: 47533962
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | errors: (none)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 10:47:56] 2025-12-09 09:33:06,858 | INFO     | pilot state: finished 
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | transexitcode: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | exeerrorcode: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | exeerrordiag: 
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | exitcode: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | exitmsg: OK
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | cpuconsumptiontime: 215084 s
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | nevents: 1000
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | neventsw: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | pid: 2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | pgrp: 2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | corecount: 4
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | event service: False
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | sizes: {0: 2284319, 5: 2284581, 11: 2284637, 54134: 2334042, 54137: 2343058, 54140: 2343114, 54149: 2343552}
[2025-12-09 10:47:56] 2025-12-09 09:33:06,859 | INFO     | --------------------------------------------------
[2025-12-09 10:47:56] 2025-12-09 09:33:06,860 | INFO     | 
[2025-12-09 10:47:56] 2025-12-09 09:33:06,860 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-09 10:47:56] 2025-12-09 09:33:06,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 10:47:56] 2025-12-09 09:33:06,882 | INFO     | job 6894257907 has completed (purged errors)
[2025-12-09 10:47:56] 2025-12-09 09:33:06,883 | INFO     | overall cleanup function is called
[2025-12-09 10:47:56] 2025-12-09 09:33:07,895 | INFO     | --- collectZombieJob: --- 10, [2150511]
[2025-12-09 10:47:56] 2025-12-09 09:33:07,895 | INFO     | zombie collector waiting for pid 2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:07,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 10:47:56] 2025-12-09 09:33:07,895 | INFO     | collected zombie processes
[2025-12-09 10:47:56] 2025-12-09 09:33:07,895 | INFO     | will attempt to kill all subprocesses of pid=2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:08,246 | INFO     | process IDs to be killed: [2150511] (in reverse order)
[2025-12-09 10:47:56] 2025-12-09 09:33:08,351 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 10:47:56] 2025-12-09 09:33:08,351 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 10:47:56] 2025-12-09 09:33:08,363 | INFO     | did not find any defunct processes belonging to 2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:08,374 | INFO     | did not find any defunct processes belonging to 2150511
[2025-12-09 10:47:56] 2025-12-09 09:33:08,376 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 10:47:56] 2025-12-09 09:33:08,376 | INFO     | ready for new job
[2025-12-09 10:47:56] 2025-12-09 09:33:08,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 10:47:56] 2025-12-09 09:33:08,380 | INFO     | ***************************************
[2025-12-09 10:47:56] 2025-12-09 09:33:08,381 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 10:47:56] 2025-12-09 09:33:08,381 | INFO     | ***************************************
[2025-12-09 10:47:56] 2025-12-09 09:33:08,381 | INFO     | 
[2025-12-09 10:47:56] 2025-12-09 09:33:08,385 | INFO     | architecture information:
[2025-12-09 10:47:56] 2025-12-09 09:33:08,386 | INFO     | executing command: cat /etc/os-release
[2025-12-09 10:47:56] 2025-12-09 09:33:08,401 | INFO     | cat /etc/os-release:
[2025-12-09 10:47:56] NAME="CentOS Linux"
[2025-12-09 10:47:56] VERSION="7 (Core)"
[2025-12-09 10:47:56] ID="centos"
[2025-12-09 10:47:56] ID_LIKE="rhel fedora"
[2025-12-09 10:47:56] VERSION_ID="7"
[2025-12-09 10:47:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 10:47:56] ANSI_COLOR="0;31"
[2025-12-09 10:47:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 10:47:56] HOME_URL="https://www.centos.org/"
[2025-12-09 10:47:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 10:47:56] 
[2025-12-09 10:47:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 10:47:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 10:47:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 10:47:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 10:47:56] 
[2025-12-09 10:47:56] 2025-12-09 09:33:08,401 | INFO     | ***************************************
[2025-12-09 10:47:56] 2025-12-09 09:33:08,904 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-09 10:47:56] 2025-12-09 09:33:08,920 | INFO     | sufficient remaining disk space (664166989824 B)
[2025-12-09 10:47:56] 2025-12-09 09:33:08,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 10:47:56] 2025-12-09 09:33:08,920 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 10:47:56] 2025-12-09 09:33:08,921 | INFO     | update_server=False
[2025-12-09 10:47:56] 2025-12-09 09:33:08,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 10:47:56] 2025-12-09 09:33:08,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 10:47:56] 2025-12-09 09:33:08,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 10:47:56] 2025-12-09 09:33:09,002 | INFO     | all data control threads have been joined
[2025-12-09 10:47:56] 2025-12-09 09:33:09,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 10:47:56] 2025-12-09 09:33:09,580 | INFO     | aborting loop
[2025-12-09 10:47:56] 2025-12-09 09:33:09,613 | INFO     | all job control threads have been joined
[2025-12-09 10:47:56] 2025-12-09 09:33:09,926 | INFO     | [job] retrieve thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,008 | INFO     | [data] control thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,220 | INFO     | [data] copytool_in thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,235 | INFO     | all payload control threads have been joined
[2025-12-09 10:47:56] 2025-12-09 09:33:10,314 | INFO     | [payload] validate_post thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,428 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,585 | INFO     | [job] job monitor thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,612 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,618 | INFO     | [job] control thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:10,922 | INFO     | [data] copytool_out thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:11,067 | INFO     | [job] validate thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:11,192 | INFO     | [payload] failed_post thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:11,239 | INFO     | [payload] control thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:11,261 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:11,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 10:47:56] 2025-12-09 09:33:12,408 | INFO     | [job] queue monitor thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:12,925 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 10:47:56] 2025-12-09 09:33:38,532 | INFO     | PID=2143583 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-09 10:47:56] 2025-12-09 09:33:38,533 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 10:47:56] 2025-12-09 09:33:38,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 10:47:56] 2025-12-09 09:33:38,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 10:47:56] 2025-12-09 09:33:42,342 | INFO     | [monitor] cgroup control has ended
[2025-12-09 10:47:56] 2025-12-09 09:33:44,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23447434819392)>', '<ExcThread(monitor, started 23447195318016)>']
[2025-12-09 10:47:56] 2025-12-09 09:33:44,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 10:47:56] 2025-12-09 09:33:44,564 | INFO     | [monitor] control thread has ended
[2025-12-09 10:47:56] 2025-12-09 09:33:49,360 | INFO     | all workflow threads have been joined
[2025-12-09 10:47:56] 2025-12-09 09:33:49,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 10:47:56] 2025-12-09 09:33:49,360 | INFO     | traces error code: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:49,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 10:47:56] 2025-12-09 09:33:49,493 [wrapper] ==== pilot stdout END ====
[2025-12-09 10:47:56] 2025-12-09 09:33:49,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 10:47:56] 2025-12-09 09:33:49,499 [wrapper] pilotpid: 2143583
[2025-12-09 10:47:56] 2025-12-09 09:33:49,502 [wrapper] Pilot exit status: 0
[2025-12-09 10:47:56] 2025-12-09 09:33:49,512 [wrapper] pandaids: 6894257907
[2025-12-09 10:47:56] 2025-12-09 09:33:49,588 [wrapper] cleanup supervisor_pilot 2602207 2143584
[2025-12-09 10:47:56] 2025-12-09 09:33:49,591 [wrapper] Test setup, not cleaning
[2025-12-09 10:47:56] 2025-12-09 09:33:49,594 [wrapper] apfmon messages muted
[2025-12-09 10:47:56] 2025-12-09 09:33:49,597 [wrapper] ==== wrapper stdout END ====
[2025-12-09 10:47:56] 2025-12-09 09:33:49,600 [wrapper] ==== wrapper stderr END ====
[2025-12-09 10:47:56]  *** Error codes and diagnostics ***
[2025-12-09 10:47:56]     "exeErrorCode": 0,
[2025-12-09 10:47:56]     "exeErrorDiag": "",
[2025-12-09 10:47:56]     "pilotErrorCode": 0,
[2025-12-09 10:47:56]     "pilotErrorDiag": "",
[2025-12-09 10:47:56]  *** Listing of results directory ***
[2025-12-09 10:47:56] total 1329296
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc      5112 Nov 27 17:16 queuedata.json
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-09 10:47:56] -rwx------ 1 boinc boinc     36292 Nov 27 17:16 runpilot2-wrapper.sh
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc       100 Dec  8 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 10:47:56] -rwxr-xr-x 1 boinc boinc      7986 Dec  8 18:41 run_atlas
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc       105 Dec  8 18:41 job.xml
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc      6639 Dec  8 19:30 init_data.xml
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc 408610621 Dec  8 19:30 EVNT.47493127._001067.pool.root.1
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc     15847 Dec  8 19:30 start_atlas.sh
[2025-12-09 10:47:56] drwxrwx--x 2 boinc boinc      4096 Dec  8 19:30 shared
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc    590107 Dec  8 19:30 input.tar.gz
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc         0 Dec  8 19:30 boinc_lockfile
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc      2783 Dec  8 19:30 pandaJob.out
[2025-12-09 10:47:56] -rw------- 1 boinc boinc    981538 Dec  8 19:30 agis_schedconf.cvmfs.json
[2025-12-09 10:47:56] drwx------ 5 boinc boinc      4096 Dec  8 19:30 pilot3
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc       531 Dec  9 10:26 boinc_task_state.xml
[2025-12-09 10:47:56] -rw------- 1 boinc boinc 930621225 Dec  9 10:32 HITS.47533962._000661.pool.root.1
[2025-12-09 10:47:56] -rw------- 1 boinc boinc        95 Dec  9 10:32 pilot_heartbeat.json
[2025-12-09 10:47:56] -rw------- 1 boinc boinc      1041 Dec  9 10:32 memory_monitor_summary.json
[2025-12-09 10:47:56] -rw------- 1 boinc boinc   1516240 Dec  9 10:32 agis_ddmendpoints.agis.ALL.json
[2025-12-09 10:47:56] -rw------- 1 boinc boinc   1634121 Dec  9 10:32 log.47533962._000661.job.log.tgz.1
[2025-12-09 10:47:56] -rw------- 1 boinc boinc      8623 Dec  9 10:33 heartbeat.json
[2025-12-09 10:47:56] -rw------- 1 boinc boinc      4758 Dec  9 10:33 pilotlog.txt
[2025-12-09 10:47:56] -rw------- 1 boinc boinc   7397152 Dec  9 10:33 log.47533962._000661.job.log.1
[2025-12-09 10:47:56] -rw------- 1 boinc boinc       353 Dec  9 10:33 output.list
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc       620 Dec  9 10:33 runtime_log
[2025-12-09 10:47:56] -rw------- 1 boinc boinc   9052160 Dec  9 10:33 result.tar.gz
[2025-12-09 10:47:56] -rw------- 1 boinc boinc       669 Dec  9 10:33 tcvMDmOqti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0uNKDmxzeUln.diag
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc      9206 Dec  9 10:33 runtime_log.err
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc        28 Dec  9 10:47 wrapper_checkpoint.txt
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc      8192 Dec  9 10:47 boinc_mmap_file
[2025-12-09 10:47:56] -rw-r--r-- 1 boinc boinc     21086 Dec  9 10:47 stderr.txt
[2025-12-09 10:47:56] HITS file was successfully produced:
[2025-12-09 10:47:56] -rw------- 1 boinc boinc 930621225 Dec  9 10:32 shared/HITS.pool.root.1
[2025-12-09 10:47:56]  *** Contents of shared directory: ***
[2025-12-09 10:47:56] total 1317292
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc 408610621 Dec  8 19:30 ATLAS.root_0
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc     15847 Dec  8 19:30 start_atlas.sh
[2025-12-09 10:47:56] -rw-r--r-- 2 boinc boinc    590107 Dec  8 19:30 input.tar.gz
[2025-12-09 10:47:56] -rw------- 1 boinc boinc 930621225 Dec  9 10:32 HITS.pool.root.1
[2025-12-09 10:47:56] -rw------- 1 boinc boinc   9052160 Dec  9 10:33 result.tar.gz
10:47:58 (2139539): run_atlas exited; CPU time 217135.963216
10:47:58 (2139539): called boinc_finish(0)

</stderr_txt>
]]>

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