Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:26:56 (25243): wrapper (7.7.26015): starting
12:26:56 (25243): wrapper: running run_atlas (--nthreads 8)
[2025-12-08 12:26:56] Arguments: --nthreads 8
[2025-12-08 12:26:56] Threads: 8
[2025-12-08 12:26:56] Checking for CVMFS
[2025-12-08 12:26:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 12:26:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 12:26:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 12:26:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 12:26:56] 2.11.2.0 2895 90878 85280 153774 4 1 15410597 20275200 1 130560 0 26871729 99.850 5934558 33010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-08 12:26:56] CVMFS is ok
[2025-12-08 12:26:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 12:26:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 12:26:56] Further information can be found at the LHC@home message board.
[2025-12-08 12:26:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 12:26:56] Checking for apptainer binary...
[2025-12-08 12:26:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 12:26:56] Running /usr/bin/apptainer --version
[2025-12-08 12:26:56] apptainer version 1.3.2-1.el7
[2025-12-08 12:26:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 12:26:58] c-204-7.aglt2.org
[2025-12-08 12:26:58] apptainer works
[2025-12-08 12:26:58] Set ATHENA_PROC_NUMBER=8
[2025-12-08 12:26:58] Set ATHENA_CORE_NUMBER=8
[2025-12-08 12:26:58] Starting ATLAS job with PandaID=6900262620
[2025-12-08 12:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 01:24:49]  *** The last 200 lines of the pilot log: ***
[2025-12-09 01:24:49] 2025-12-09 06:24:13,515 | INFO     | time since job start (46616s) is within the limit (172800.0s)
[2025-12-09 01:24:49] 2025-12-09 06:24:15,165 | INFO     | monitor loop #3427: job 0:6900262620 is in state 'finished'
[2025-12-09 01:24:49] 2025-12-09 06:24:15,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 01:24:49] 2025-12-09 06:24:15,521 | INFO     | time since job start (46618s) is within the limit (172800.0s)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,062 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-09 01:24:49] 2025-12-09 06:24:16,068 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1662.5
[2025-12-09 01:24:49] 2025-12-09 06:24:16,072 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6900262620/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,073 | INFO     | extracted standard info from prmon json
[2025-12-09 01:24:49] 2025-12-09 06:24:16,073 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 01:24:49] 2025-12-09 06:24:16,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 01:24:49] 2025-12-09 06:24:16,095 | INFO     | fitting pss+swap vs Time
[2025-12-09 01:24:49] 2025-12-09 06:24:16,096 | INFO     | sum of square deviations: 138279701234.11005
[2025-12-09 01:24:49] 2025-12-09 06:24:16,114 | INFO     | sum of deviations: 910091711621.5636
[2025-12-09 01:24:49] 2025-12-09 06:24:16,114 | INFO     | mean x: 1765238141.0497382
[2025-12-09 01:24:49] 2025-12-09 06:24:16,114 | INFO     | mean y: 2868518.0641361256
[2025-12-09 01:24:49] 2025-12-09 06:24:16,115 | INFO     | intersect: -11615095556.704445
[2025-12-09 01:24:49] 2025-12-09 06:24:16,116 | INFO     | chi2: 6.301243326632125
[2025-12-09 01:24:49] 2025-12-09 06:24:16,117 | INFO     | sum of square deviations: 135582643877.5889
[2025-12-09 01:24:49] 2025-12-09 06:24:16,133 | INFO     | sum of deviations: 1168162801250.7627
[2025-12-09 01:24:49] 2025-12-09 06:24:16,133 | INFO     | mean x: 1765237988.5533597
[2025-12-09 01:24:49] 2025-12-09 06:24:16,134 | INFO     | mean y: 2883107.5243741767
[2025-12-09 01:24:49] 2025-12-09 06:24:16,134 | INFO     | intersect: -15206182703.61671
[2025-12-09 01:24:49] 2025-12-09 06:24:16,135 | INFO     | chi2: 3.1123283728652797
[2025-12-09 01:24:49] 2025-12-09 06:24:16,135 | INFO     | current chi2=3.1123283728652797 (change=50.6077100734856 %)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,136 | INFO     | sum of square deviations: 132920889508.54791
[2025-12-09 01:24:49] 2025-12-09 06:24:16,151 | INFO     | sum of deviations: 1273284182699.112
[2025-12-09 01:24:49] 2025-12-09 06:24:16,151 | INFO     | mean x: 1765237836.0570292
[2025-12-09 01:24:49] 2025-12-09 06:24:16,151 | INFO     | mean y: 2889124.99734748
[2025-12-09 01:24:49] 2025-12-09 06:24:16,151 | INFO     | intersect: -16906788681.581589
[2025-12-09 01:24:49] 2025-12-09 06:24:16,152 | INFO     | chi2: 2.4370832114827117
[2025-12-09 01:24:49] 2025-12-09 06:24:16,152 | INFO     | current chi2=2.4370832114827117 (change=21.695819993470742 %)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,153 | INFO     | right removable region: 753
[2025-12-09 01:24:49] 2025-12-09 06:24:16,154 | INFO     | sum of square deviations: 135582387677.58887
[2025-12-09 01:24:49] 2025-12-09 06:24:16,168 | INFO     | sum of deviations: 704867075044.2402
[2025-12-09 01:24:49] 2025-12-09 06:24:16,168 | INFO     | mean x: 1765238293.5533597
[2025-12-09 01:24:49] 2025-12-09 06:24:16,168 | INFO     | mean y: 2880103.2779973648
[2025-12-09 01:24:49] 2025-12-09 06:24:16,169 | INFO     | intersect: -9174258417.780167
[2025-12-09 01:24:49] 2025-12-09 06:24:16,169 | INFO     | chi2: 4.17371185868196
[2025-12-09 01:24:49] 2025-12-09 06:24:16,170 | INFO     | current chi2=4.17371185868196 (change=33.76367738344876 %)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,171 | INFO     | sum of square deviations: 132920377108.54784
[2025-12-09 01:24:49] 2025-12-09 06:24:16,183 | INFO     | sum of deviations: 651918165981.5975
[2025-12-09 01:24:49] 2025-12-09 06:24:16,184 | INFO     | mean x: 1765238446.0570292
[2025-12-09 01:24:49] 2025-12-09 06:24:16,184 | INFO     | mean y: 2883136.9628647217
[2025-12-09 01:24:49] 2025-12-09 06:24:16,184 | INFO     | intersect: -8654863969.29101
[2025-12-09 01:24:49] 2025-12-09 06:24:16,185 | INFO     | chi2: 4.108460292057416
[2025-12-09 01:24:49] 2025-12-09 06:24:16,185 | INFO     | current chi2=4.108460292057416 (change=1.5633941401299973 %)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,185 | INFO     | left removable region: 20
[2025-12-09 01:24:49] 2025-12-09 06:24:16,186 | INFO     | sum of square deviations: 122121028084.17229
[2025-12-09 01:24:49] 2025-12-09 06:24:16,197 | INFO     | sum of deviations: 937459325627.4995
[2025-12-09 01:24:49] 2025-12-09 06:24:16,197 | INFO     | mean x: 1765238415.5648022
[2025-12-09 01:24:49] 2025-12-09 06:24:16,197 | INFO     | mean y: 2909957.2210095497
[2025-12-09 01:24:49] 2025-12-09 06:24:16,197 | INFO     | intersect: -13547903040.246815
[2025-12-09 01:24:49] 2025-12-09 06:24:16,198 | INFO     | chi2: 0.12945980985256583
[2025-12-09 01:24:49] 2025-12-09 06:24:16,198 | INFO     | current memory leak: 7.68 B/s (using 733 data points, chi2=0.13)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,199 | INFO     | could have reported an average CPU frequency of 2172 MHz (29 samples)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,199 | INFO     | ..............................
[2025-12-09 01:24:49] 2025-12-09 06:24:16,199 | INFO     | . Timing measurements:
[2025-12-09 01:24:49] 2025-12-09 06:24:16,199 | INFO     | . get job = 0 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,199 | INFO     | . initial setup = 2 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | . payload setup = 9 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | . stage-in = 0 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | . payload execution = 46574 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | . stage-out = 3 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | . log creation = 0 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,200 | INFO     | ..............................
[2025-12-09 01:24:49] 2025-12-09 06:24:16,634 | INFO     | 
[2025-12-09 01:24:49] 2025-12-09 06:24:16,634 | INFO     | job summary report
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | --------------------------------------------------
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | PanDA job id: 6900262620
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | task id: 47556185
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | errors: (none)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | pilot state: finished 
[2025-12-09 01:24:49] 2025-12-09 06:24:16,635 | INFO     | transexitcode: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | exeerrorcode: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | exeerrordiag: 
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | exitcode: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | exitmsg: OK
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | cpuconsumptiontime: 361152 s
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | nevents: 1000
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | neventsw: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:16,636 | INFO     | pid: 3153
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | pgrp: 3153
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | corecount: 8
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | event service: False
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | sizes: {0: 2284145, 1: 2284344, 7: 2284606, 12: 2284634, 46588: 2331142, 46592: 2340136, 46595: 2340320, 46602: 2340566}
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | --------------------------------------------------
[2025-12-09 01:24:49] 2025-12-09 06:24:16,637 | INFO     | 
[2025-12-09 01:24:49] 2025-12-09 06:24:16,638 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 01:24:49] 2025-12-09 06:24:16,668 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,668 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,669 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | job 6900262620 has completed (purged errors)
[2025-12-09 01:24:49] 2025-12-09 06:24:16,671 | INFO     | overall cleanup function is called
[2025-12-09 01:24:49] 2025-12-09 06:24:17,686 | INFO     | --- collectZombieJob: --- 10, [3153]
[2025-12-09 01:24:49] 2025-12-09 06:24:17,686 | INFO     | zombie collector waiting for pid 3153
[2025-12-09 01:24:49] 2025-12-09 06:24:17,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 01:24:49] 2025-12-09 06:24:17,703 | INFO     | collected zombie processes
[2025-12-09 01:24:49] 2025-12-09 06:24:17,703 | INFO     | will attempt to kill all subprocesses of pid=3153
[2025-12-09 01:24:49] 2025-12-09 06:24:17,811 | INFO     | process IDs to be killed: [3153] (in reverse order)
[2025-12-09 01:24:49] 2025-12-09 06:24:17,866 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 01:24:49] 2025-12-09 06:24:17,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 01:24:49] 2025-12-09 06:24:17,870 | INFO     | did not find any defunct processes belonging to 3153
[2025-12-09 01:24:49] 2025-12-09 06:24:17,873 | INFO     | did not find any defunct processes belonging to 3153
[2025-12-09 01:24:49] 2025-12-09 06:24:17,876 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 01:24:49] 2025-12-09 06:24:17,876 | INFO     | ready for new job
[2025-12-09 01:24:49] 2025-12-09 06:24:17,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 01:24:49] 2025-12-09 06:24:17,880 | INFO     | ***************************************
[2025-12-09 01:24:49] 2025-12-09 06:24:17,880 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 01:24:49] 2025-12-09 06:24:17,881 | INFO     | ***************************************
[2025-12-09 01:24:49] 2025-12-09 06:24:17,881 | INFO     | 
[2025-12-09 01:24:49] 2025-12-09 06:24:17,881 | INFO     | architecture information:
[2025-12-09 01:24:49] 2025-12-09 06:24:17,882 | INFO     | executing command: cat /etc/os-release
[2025-12-09 01:24:49] 2025-12-09 06:24:17,900 | INFO     | cat /etc/os-release:
[2025-12-09 01:24:49] NAME="CentOS Linux"
[2025-12-09 01:24:49] VERSION="7 (Core)"
[2025-12-09 01:24:49] ID="centos"
[2025-12-09 01:24:49] ID_LIKE="rhel fedora"
[2025-12-09 01:24:49] VERSION_ID="7"
[2025-12-09 01:24:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 01:24:49] ANSI_COLOR="0;31"
[2025-12-09 01:24:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 01:24:49] HOME_URL="https://www.centos.org/"
[2025-12-09 01:24:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 01:24:49] 
[2025-12-09 01:24:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 01:24:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 01:24:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 01:24:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 01:24:49] 
[2025-12-09 01:24:49] 2025-12-09 06:24:17,900 | INFO     | ***************************************
[2025-12-09 01:24:49] 2025-12-09 06:24:18,404 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 01:24:49] 2025-12-09 06:24:18,424 | INFO     | sufficient remaining disk space (17462984704 B)
[2025-12-09 01:24:49] 2025-12-09 06:24:18,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 01:24:49] 2025-12-09 06:24:18,424 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 01:24:49] 2025-12-09 06:24:18,425 | INFO     | update_server=False
[2025-12-09 01:24:49] 2025-12-09 06:24:18,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 01:24:49] 2025-12-09 06:24:18,609 | INFO     | all payload control threads have been joined
[2025-12-09 01:24:49] 2025-12-09 06:24:18,662 | INFO     | all data control threads have been joined
[2025-12-09 01:24:49] 2025-12-09 06:24:18,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 01:24:49] 2025-12-09 06:24:18,675 | INFO     | aborting loop
[2025-12-09 01:24:49] 2025-12-09 06:24:19,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 01:24:49] 2025-12-09 06:24:19,369 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 01:24:49] 2025-12-09 06:24:19,430 | INFO     | [job] retrieve thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,439 | INFO     | [payload] failed_post thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,615 | INFO     | [payload] control thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,669 | INFO     | [data] control thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,681 | INFO     | [job] job monitor thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,725 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:19,833 | INFO     | all job control threads have been joined
[2025-12-09 01:24:49] 2025-12-09 06:24:19,942 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,075 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,108 | INFO     | [job] validate thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,310 | INFO     | [data] copytool_in thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,839 | INFO     | [job] control thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:20,942 | INFO     | [payload] validate_post thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:21,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 01:24:49] 2025-12-09 06:24:21,375 | INFO     | [data] copytool_out thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:22,305 | INFO     | [job] queue monitor thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:23,244 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 01:24:49] 2025-12-09 06:24:33,588 | INFO     | [monitor] cgroup control has ended
[2025-12-09 01:24:49] 2025-12-09 06:24:35,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849919977280)>', '<ExcThread(monitor, started 139848891492096)>']
[2025-12-09 01:24:49] 2025-12-09 06:24:40,224 | INFO     | all workflow threads have been joined
[2025-12-09 01:24:49] 2025-12-09 06:24:40,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 01:24:49] 2025-12-09 06:24:40,224 | INFO     | traces error code: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:40,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 01:24:49] 2025-12-09 06:24:48,761 | INFO     | PID=28990 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-09 01:24:49] 2025-12-09 06:24:48,762 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 01:24:49] 2025-12-09 06:24:48,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 01:24:49] 2025-12-09 06:24:48,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 01:24:49] 2025-12-09 06:24:48,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 01:24:49] 2025-12-09 06:24:48,763 | INFO     | [monitor] control thread has ended
[2025-12-09 01:24:49] 2025-12-09 06:24:48,892 [wrapper] ==== pilot stdout END ====
[2025-12-09 01:24:49] 2025-12-09 06:24:48,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 01:24:49] 2025-12-09 06:24:48,902 [wrapper] pilotpid: 28990
[2025-12-09 01:24:49] 2025-12-09 06:24:48,906 [wrapper] Pilot exit status: 0
[2025-12-09 01:24:49] 2025-12-09 06:24:48,922 [wrapper] pandaids: 6900262620
[2025-12-09 01:24:49] 2025-12-09 06:24:48,968 [wrapper] cleanup supervisor_pilot 11547 28991
[2025-12-09 01:24:49] 2025-12-09 06:24:48,972 [wrapper] Test setup, not cleaning
[2025-12-09 01:24:49] 2025-12-09 06:24:48,977 [wrapper] apfmon messages muted
[2025-12-09 01:24:49] 2025-12-09 06:24:48,981 [wrapper] ==== wrapper stdout END ====
[2025-12-09 01:24:49] 2025-12-09 06:24:48,986 [wrapper] ==== wrapper stderr END ====
[2025-12-09 01:24:49]  *** Error codes and diagnostics ***
[2025-12-09 01:24:49]     "exeErrorCode": 0,
[2025-12-09 01:24:49]     "exeErrorDiag": "",
[2025-12-09 01:24:49]     "pilotErrorCode": 0,
[2025-12-09 01:24:49]     "pilotErrorDiag": "",
[2025-12-09 01:24:49]  *** Listing of results directory ***
[2025-12-09 01:24:49] total 1320248
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 11:16 pilot3.tar.gz
[2025-12-09 01:24:49] -rwx------ 1 boincer umatlas     36292 Nov 27 11:19 runpilot2-wrapper.sh
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 11:20 queuedata.json
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas       100 Dec  8 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 01:24:49] -rwxr-xr-x 1 boincer umatlas      7986 Dec  8 12:26 run_atlas
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas       105 Dec  8 12:26 job.xml
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas 411109602 Dec  8 12:26 EVNT.47483658._004375.pool.root.1
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 12:26 start_atlas.sh
[2025-12-09 01:24:49] drwxrwx--x 2 boincer umatlas      4096 Dec  8 12:26 shared
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas    590110 Dec  8 12:26 input.tar.gz
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas         0 Dec  8 12:26 boinc_lockfile
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas      2787 Dec  8 12:26 pandaJob.out
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas        57 Dec  8 12:26 setup.sh.local
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas    981422 Dec  8 12:27 agis_schedconf.cvmfs.json
[2025-12-09 01:24:49] drwx------ 5 boincer umatlas      4096 Dec  8 12:27 pilot3
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas       532 Dec  9 01:12 boinc_task_state.xml
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas      5911 Dec  9 01:20 init_data.xml
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas 920035797 Dec  9 01:23 HITS.47556185._001385.pool.root.1
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas      1061 Dec  9 01:23 memory_monitor_summary.json
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas   1516240 Dec  9 01:24 agis_ddmendpoints.agis.ALL.json
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas   2017339 Dec  9 01:24 log.47556185._001385.job.log.tgz.1
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas      8659 Dec  9 01:24 heartbeat.json
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas      8192 Dec  9 01:24 boinc_mmap_file
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas        29 Dec  9 01:24 wrapper_checkpoint.txt
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas        95 Dec  9 01:24 pilot_heartbeat.json
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas       745 Dec  9 01:24 pilotlog.txt
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas   6424511 Dec  9 01:24 log.47556185._001385.job.log.1
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas       353 Dec  9 01:24 output.list
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas       620 Dec  9 01:24 runtime_log
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas   8458240 Dec  9 01:24 result.tar.gz
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas       667 Dec  9 01:24 zZ9LDmYtti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh1NKDmTSDxsm.diag
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas      9338 Dec  9 01:24 runtime_log.err
[2025-12-09 01:24:49] -rw-r--r-- 1 boincer umatlas     21303 Dec  9 01:24 stderr.txt
[2025-12-09 01:24:49] HITS file was successfully produced:
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas 920035797 Dec  9 01:23 shared/HITS.pool.root.1
[2025-12-09 01:24:49]  *** Contents of shared directory: ***
[2025-12-09 01:24:49] total 1308816
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas 411109602 Dec  8 12:26 ATLAS.root_0
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 12:26 start_atlas.sh
[2025-12-09 01:24:49] -rw-r--r-- 2 boincer umatlas    590110 Dec  8 12:26 input.tar.gz
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas 920035797 Dec  9 01:23 HITS.pool.root.1
[2025-12-09 01:24:49] -rw------- 1 boincer umatlas   8458240 Dec  9 01:24 result.tar.gz
01:24:51 (25243): run_atlas exited; CPU time 357359.410546
01:24:51 (25243): called boinc_finish(0)

</stderr_txt>
]]>

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