Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:46:29 (932): wrapper (7.7.26015): starting
04:46:29 (932): wrapper: running run_atlas (--nthreads 8)
[2025-12-08 04:46:29] Arguments: --nthreads 8
[2025-12-08 04:46:29] Threads: 8
[2025-12-08 04:46:29] Checking for CVMFS
[2025-12-08 04:46:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 04:46:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 04:46:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 04:46:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 04:46:30] 2.11.2.0 31887 23506 87372 153760 0 1 16331996 20275200 1 130560 0 6772224 99.877 1488441 37278 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-08 04:46:30] CVMFS is ok
[2025-12-08 04:46:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 04:46:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 04:46:30] Further information can be found at the LHC@home message board.
[2025-12-08 04:46:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 04:46:30] Checking for apptainer binary...
[2025-12-08 04:46:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-08 04:46:30] Running /usr/bin/apptainer --version
[2025-12-08 04:46:30] apptainer version 1.3.2-1.el7
[2025-12-08 04:46:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 04:46:31] c-204-12.aglt2.org
[2025-12-08 04:46:31] apptainer works
[2025-12-08 04:46:31] Set ATHENA_PROC_NUMBER=8
[2025-12-08 04:46:31] Set ATHENA_CORE_NUMBER=8
[2025-12-08 04:46:31] Starting ATLAS job with PandaID=6901249399
[2025-12-08 04:46:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 15:41:03]  *** The last 200 lines of the pilot log: ***
[2025-12-08 15:41:03] 2025-12-08 20:40:11,493 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-08 15:41:03] 2025-12-08 20:40:11,496 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-12-08 15:41:03] 2025-12-08 20:40:11,498 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6901249399/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,498 | INFO     | extracted standard info from prmon json
[2025-12-08 15:41:03] 2025-12-08 20:40:11,498 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 15:41:03] 2025-12-08 20:40:11,499 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 15:41:03] 2025-12-08 20:40:11,509 | INFO     | fitting pss+swap vs Time
[2025-12-08 15:41:03] 2025-12-08 20:40:11,510 | INFO     | sum of square deviations: 82051024914.38171
[2025-12-08 15:41:03] 2025-12-08 20:40:11,518 | INFO     | sum of deviations: 679761757067.4312
[2025-12-08 15:41:03] 2025-12-08 20:40:11,518 | INFO     | mean x: 1765206801.936137
[2025-12-08 15:41:03] 2025-12-08 20:40:11,518 | INFO     | mean y: 3364344.2788161994
[2025-12-08 15:41:03] 2025-12-08 20:40:11,518 | INFO     | intersect: -14620707427.20213
[2025-12-08 15:41:03] 2025-12-08 20:40:11,519 | INFO     | chi2: 6.309636529920079
[2025-12-08 15:41:03] 2025-12-08 20:40:11,520 | INFO     | sum of square deviations: 80148925810.92282
[2025-12-08 15:41:03] 2025-12-08 20:40:11,528 | INFO     | sum of deviations: 923539511770.891
[2025-12-08 15:41:03] 2025-12-08 20:40:11,529 | INFO     | mean x: 1765206649.4395604
[2025-12-08 15:41:03] 2025-12-08 20:40:11,529 | INFO     | mean y: 3383879.7503924645
[2025-12-08 15:41:03] 2025-12-08 20:40:11,529 | INFO     | intersect: -20336727615.243225
[2025-12-08 15:41:03] 2025-12-08 20:40:11,529 | INFO     | chi2: 3.2457326766916212
[2025-12-08 15:41:03] 2025-12-08 20:40:11,530 | INFO     | current chi2=3.2457326766916212 (change=48.559118083894866 %)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,530 | INFO     | sum of square deviations: 78276455169.94972
[2025-12-08 15:41:03] 2025-12-08 20:40:11,539 | INFO     | sum of deviations: 1000560386377.2657
[2025-12-08 15:41:03] 2025-12-08 20:40:11,539 | INFO     | mean x: 1765206496.943038
[2025-12-08 15:41:03] 2025-12-08 20:40:11,539 | INFO     | mean y: 3390140.174050633
[2025-12-08 15:41:03] 2025-12-08 20:40:11,539 | INFO     | intersect: -22560172437.90022
[2025-12-08 15:41:03] 2025-12-08 20:40:11,540 | INFO     | chi2: 2.792154524306659
[2025-12-08 15:41:03] 2025-12-08 20:40:11,540 | INFO     | current chi2=2.792154524306659 (change=13.974599807378313 %)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,540 | INFO     | right removable region: 631
[2025-12-08 15:41:03] 2025-12-08 20:40:11,541 | INFO     | sum of square deviations: 80148755010.92285
[2025-12-08 15:41:03] 2025-12-08 20:40:11,549 | INFO     | monitor loop #2895: job 0:6901249399 is in state 'finished'
[2025-12-08 15:41:03] 2025-12-08 20:40:11,551 | INFO     | sum of deviations: 444778671147.2411
[2025-12-08 15:41:03] 2025-12-08 20:40:11,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,552 | INFO     | mean x: 1765206954.4395604
[2025-12-08 15:41:03] 2025-12-08 20:40:11,552 | INFO     | mean y: 3383160.5777080064
[2025-12-08 15:41:03] 2025-12-08 20:40:11,552 | INFO     | intersect: -9792482082.600399
[2025-12-08 15:41:03] 2025-12-08 20:40:11,553 | INFO     | chi2: 3.655908673395515
[2025-12-08 15:41:03] 2025-12-08 20:40:11,553 | INFO     | current chi2=3.655908673395515 (change=42.05833163195182 %)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,554 | INFO     | sum of square deviations: 78276113569.94974
[2025-12-08 15:41:03] 2025-12-08 20:40:11,563 | INFO     | sum of deviations: 403707797460.14
[2025-12-08 15:41:03] 2025-12-08 20:40:11,563 | INFO     | mean x: 1765207106.943038
[2025-12-08 15:41:03] 2025-12-08 20:40:11,564 | INFO     | mean y: 3386502.7816455695
[2025-12-08 15:41:03] 2025-12-08 20:40:11,564 | INFO     | intersect: -9100640775.835546
[2025-12-08 15:41:03] 2025-12-08 20:40:11,564 | INFO     | chi2: 3.6162260356108895
[2025-12-08 15:41:03] 2025-12-08 20:40:11,565 | INFO     | current chi2=3.6162260356108895 (change=1.0854384321304538 %)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,565 | INFO     | left removable region: 20
[2025-12-08 15:41:03] 2025-12-08 20:40:11,565 | INFO     | sum of square deviations: 70729765989.3258
[2025-12-08 15:41:03] 2025-12-08 20:40:11,573 | INFO     | sum of deviations: 675323572743.294
[2025-12-08 15:41:03] 2025-12-08 20:40:11,573 | INFO     | mean x: 1765207076.4517186
[2025-12-08 15:41:03] 2025-12-08 20:40:11,573 | INFO     | mean y: 3416818.433715221
[2025-12-08 15:41:03] 2025-12-08 20:40:11,574 | INFO     | intersect: -16850674706.215515
[2025-12-08 15:41:03] 2025-12-08 20:40:11,574 | INFO     | chi2: 0.05767999338369687
[2025-12-08 15:41:03] 2025-12-08 20:40:11,574 | INFO     | current memory leak: 9.55 B/s (using 611 data points, chi2=0.06)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | could have reported an average CPU frequency of 2165 MHz (25 samples)
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | ..............................
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | . Timing measurements:
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | . get job = 0 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | . initial setup = 2 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,575 | INFO     | . payload setup = 16 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,576 | INFO     | . stage-in = 0 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,576 | INFO     | . payload execution = 39147 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,576 | INFO     | . stage-out = 3 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,576 | INFO     | . log creation = 0 s
[2025-12-08 15:41:03] 2025-12-08 20:40:11,576 | INFO     | ..............................
[2025-12-08 15:41:03] 2025-12-08 20:40:12,041 | INFO     | 
[2025-12-08 15:41:03] 2025-12-08 20:40:12,042 | INFO     | job summary report
[2025-12-08 15:41:03] 2025-12-08 20:40:12,042 | INFO     | --------------------------------------------------
[2025-12-08 15:41:03] 2025-12-08 20:40:12,042 | INFO     | PanDA job id: 6901249399
[2025-12-08 15:41:03] 2025-12-08 20:40:12,042 | INFO     | task id: 47531058
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | errors: (none)
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | pilot state: finished 
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | transexitcode: 0
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | exeerrorcode: 0
[2025-12-08 15:41:03] 2025-12-08 20:40:12,043 | INFO     | exeerrordiag: 
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | exitcode: 0
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | exitmsg: OK
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | cpuconsumptiontime: 302476 s
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | nevents: 1000
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | neventsw: 0
[2025-12-08 15:41:03] 2025-12-08 20:40:12,044 | INFO     | pid: 12289
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | pgrp: 12289
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | corecount: 8
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | event service: False
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | sizes: {0: 2284282, 1: 2284481, 7: 2284743, 11: 2284771, 39167: 2347073, 39168: 2347072, 39172: 2356250, 39174: 2356306, 39183: 2356616}
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | --------------------------------------------------
[2025-12-08 15:41:03] 2025-12-08 20:40:12,045 | INFO     | 
[2025-12-08 15:41:03] 2025-12-08 20:40:12,046 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-08 15:41:03] 2025-12-08 20:40:12,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 15:41:03] 2025-12-08 20:40:12,077 | INFO     | job 6901249399 has completed (purged errors)
[2025-12-08 15:41:03] 2025-12-08 20:40:12,077 | INFO     | overall cleanup function is called
[2025-12-08 15:41:03] 2025-12-08 20:40:13,094 | INFO     | --- collectZombieJob: --- 10, [12289]
[2025-12-08 15:41:03] 2025-12-08 20:40:13,094 | INFO     | zombie collector waiting for pid 12289
[2025-12-08 15:41:03] 2025-12-08 20:40:13,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 15:41:03] 2025-12-08 20:40:13,094 | INFO     | collected zombie processes
[2025-12-08 15:41:03] 2025-12-08 20:40:13,095 | INFO     | will attempt to kill all subprocesses of pid=12289
[2025-12-08 15:41:03] 2025-12-08 20:40:13,183 | INFO     | process IDs to be killed: [12289] (in reverse order)
[2025-12-08 15:41:03] 2025-12-08 20:40:13,241 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 15:41:03] 2025-12-08 20:40:13,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 15:41:03] 2025-12-08 20:40:13,245 | INFO     | did not find any defunct processes belonging to 12289
[2025-12-08 15:41:03] 2025-12-08 20:40:13,248 | INFO     | did not find any defunct processes belonging to 12289
[2025-12-08 15:41:03] 2025-12-08 20:40:13,250 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 15:41:03] 2025-12-08 20:40:13,251 | INFO     | ready for new job
[2025-12-08 15:41:03] 2025-12-08 20:40:13,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 15:41:03] 2025-12-08 20:40:13,254 | INFO     | ***************************************
[2025-12-08 15:41:03] 2025-12-08 20:40:13,254 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 15:41:03] 2025-12-08 20:40:13,254 | INFO     | ***************************************
[2025-12-08 15:41:03] 2025-12-08 20:40:13,254 | INFO     | 
[2025-12-08 15:41:03] 2025-12-08 20:40:13,255 | INFO     | architecture information:
[2025-12-08 15:41:03] 2025-12-08 20:40:13,256 | INFO     | executing command: cat /etc/os-release
[2025-12-08 15:41:03] 2025-12-08 20:40:13,273 | INFO     | cat /etc/os-release:
[2025-12-08 15:41:03] NAME="CentOS Linux"
[2025-12-08 15:41:03] VERSION="7 (Core)"
[2025-12-08 15:41:03] ID="centos"
[2025-12-08 15:41:03] ID_LIKE="rhel fedora"
[2025-12-08 15:41:03] VERSION_ID="7"
[2025-12-08 15:41:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 15:41:03] ANSI_COLOR="0;31"
[2025-12-08 15:41:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 15:41:03] HOME_URL="https://www.centos.org/"
[2025-12-08 15:41:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 15:41:03] 
[2025-12-08 15:41:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 15:41:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 15:41:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 15:41:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 15:41:03] 
[2025-12-08 15:41:03] 2025-12-08 20:40:13,274 | INFO     | ***************************************
[2025-12-08 15:41:03] 2025-12-08 20:40:13,777 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-08 15:41:03] 2025-12-08 20:40:13,797 | INFO     | sufficient remaining disk space (17753440256 B)
[2025-12-08 15:41:03] 2025-12-08 20:40:13,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 15:41:03] 2025-12-08 20:40:13,798 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 15:41:03] 2025-12-08 20:40:13,798 | INFO     | update_server=False
[2025-12-08 15:41:03] 2025-12-08 20:40:13,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 15:41:03] 2025-12-08 20:40:13,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 15:41:03] 2025-12-08 20:40:13,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 15:41:03] 2025-12-08 20:40:13,996 | INFO     | all payload control threads have been joined
[2025-12-08 15:41:03] 2025-12-08 20:40:14,055 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-08 15:41:03] 2025-12-08 20:40:14,056 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-08 15:41:03] 2025-12-08 20:40:14,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 15:41:03] 2025-12-08 20:40:14,063 | INFO     | will abort loop
[2025-12-08 15:41:03] 2025-12-08 20:40:14,480 | INFO     | all data control threads have been joined
[2025-12-08 15:41:03] 2025-12-08 20:40:14,804 | INFO     | [job] retrieve thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:14,929 | INFO     | [payload] failed_post thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,002 | INFO     | [payload] control thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,064 | INFO     | [job] job monitor thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,142 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,238 | INFO     | [data] copytool_in thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,256 | INFO     | [payload] validate_post thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,404 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,486 | INFO     | [data] control thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,504 | INFO     | all job control threads have been joined
[2025-12-08 15:41:03] 2025-12-08 20:40:15,550 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,632 | INFO     | [job] validate thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:15,920 | INFO     | [data] copytool_out thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:16,507 | INFO     | [job] control thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:16,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 15:41:03] 2025-12-08 20:40:17,677 | INFO     | [job] queue monitor thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:17,804 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 15:41:03] 2025-12-08 20:40:44,418 | INFO     | PID=5120 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-08 15:41:03] 2025-12-08 20:40:44,418 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 15:41:03] 2025-12-08 20:40:44,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 15:41:03] 2025-12-08 20:40:44,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 15:41:03] 2025-12-08 20:40:56,270 | INFO     | [monitor] cgroup control has ended
[2025-12-08 15:41:03] 2025-12-08 20:40:58,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612568012608)>', '<ExcThread(monitor, started 140611952813824)>']
[2025-12-08 15:41:03] 2025-12-08 20:40:58,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 15:41:03] 2025-12-08 20:40:58,476 | INFO     | [monitor] control thread has ended
[2025-12-08 15:41:03] 2025-12-08 20:41:03,268 | INFO     | all workflow threads have been joined
[2025-12-08 15:41:03] 2025-12-08 20:41:03,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 15:41:03] 2025-12-08 20:41:03,269 | INFO     | traces error code: 0
[2025-12-08 15:41:03] 2025-12-08 20:41:03,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 15:41:03] 2025-12-08 20:41:03,375 [wrapper] ==== pilot stdout END ====
[2025-12-08 15:41:03] 2025-12-08 20:41:03,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 15:41:03] 2025-12-08 20:41:03,385 [wrapper] pilotpid: 5120
[2025-12-08 15:41:03] 2025-12-08 20:41:03,390 [wrapper] Pilot exit status: 0
[2025-12-08 15:41:03] 2025-12-08 20:41:03,408 [wrapper] pandaids: 6901249399
[2025-12-08 15:41:03] 2025-12-08 20:41:03,461 [wrapper] cleanup supervisor_pilot  3533 5121
[2025-12-08 15:41:03] 2025-12-08 20:41:03,467 [wrapper] Test setup, not cleaning
[2025-12-08 15:41:03] 2025-12-08 20:41:03,472 [wrapper] apfmon messages muted
[2025-12-08 15:41:03] 2025-12-08 20:41:03,477 [wrapper] ==== wrapper stdout END ====
[2025-12-08 15:41:03] 2025-12-08 20:41:03,482 [wrapper] ==== wrapper stderr END ====
[2025-12-08 15:41:03]  *** Error codes and diagnostics ***
[2025-12-08 15:41:03]     "exeErrorCode": 0,
[2025-12-08 15:41:03]     "exeErrorDiag": "",
[2025-12-08 15:41:03]     "pilotErrorCode": 0,
[2025-12-08 15:41:03]     "pilotErrorDiag": "",
[2025-12-08 15:41:03]  *** Listing of results directory ***
[2025-12-08 15:41:03] total 1069616
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-08 15:41:03] -rwx------ 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:20 queuedata.json
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas       100 Dec  8 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 15:41:03] -rwxr-xr-x 1 boincer umatlas      7986 Dec  8 04:46 run_atlas
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas       105 Dec  8 04:46 job.xml
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas 375514040 Dec  8 04:46 EVNT.47531050._000578.pool.root.1
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 04:46 start_atlas.sh
[2025-12-08 15:41:03] drwxrwx--x 2 boincer umatlas      4096 Dec  8 04:46 shared
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas    590118 Dec  8 04:46 input.tar.gz
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas         0 Dec  8 04:46 boinc_lockfile
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas      2880 Dec  8 04:46 pandaJob.out
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas        57 Dec  8 04:46 setup.sh.local
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas    981194 Dec  8 04:46 agis_schedconf.cvmfs.json
[2025-12-08 15:41:03] drwx------ 5 boincer umatlas      4096 Dec  8 04:46 pilot3
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas       532 Dec  8 15:29 boinc_task_state.xml
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas      5912 Dec  8 15:36 init_data.xml
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas 700995666 Dec  8 15:39 HITS.47531058._001939.pool.root.1
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas      1059 Dec  8 15:39 memory_monitor_summary.json
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas   1516240 Dec  8 15:39 agis_ddmendpoints.agis.ALL.json
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas   2003518 Dec  8 15:40 log.47531058._001939.job.log.tgz.1
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas        95 Dec  8 15:40 pilot_heartbeat.json
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas     27875 Dec  8 15:40 heartbeat.json
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas        29 Dec  8 15:40 wrapper_checkpoint.txt
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas      8192 Dec  8 15:40 boinc_mmap_file
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas      4931 Dec  8 15:41 pilotlog.txt
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas   5407646 Dec  8 15:41 log.47531058._001939.job.log.1
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas       353 Dec  8 15:41 output.list
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas       620 Dec  8 15:41 runtime_log
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas   7454720 Dec  8 15:41 result.tar.gz
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas      9343 Dec  8 15:41 runtime_log.err
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas       668 Dec  8 15:41 N9ZLDm9HWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml0OKDmRxJBHm.diag
[2025-12-08 15:41:03] -rw-r--r-- 1 boincer umatlas     21303 Dec  8 15:41 stderr.txt
[2025-12-08 15:41:03] HITS file was successfully produced:
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas 700995666 Dec  8 15:39 shared/HITS.pool.root.1
[2025-12-08 15:41:03]  *** Contents of shared directory: ***
[2025-12-08 15:41:03] total 1059168
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas 375514040 Dec  8 04:46 ATLAS.root_0
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas     15847 Dec  8 04:46 start_atlas.sh
[2025-12-08 15:41:03] -rw-r--r-- 2 boincer umatlas    590118 Dec  8 04:46 input.tar.gz
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas 700995666 Dec  8 15:39 HITS.pool.root.1
[2025-12-08 15:41:03] -rw------- 1 boincer umatlas   7454720 Dec  8 15:41 result.tar.gz
15:41:05 (932): run_atlas exited; CPU time 298278.956470
15:41:05 (932): called boinc_finish(0)

</stderr_txt>
]]>

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