Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:49:05 (3299878): wrapper (7.7.26015): starting
22:49:05 (3299878): wrapper: running run_atlas (--nthreads 11)
[2025-12-07 22:49:05] Arguments: --nthreads 11
[2025-12-07 22:49:05] Threads: 11
[2025-12-07 22:49:05] Checking for CVMFS
[2025-12-07 22:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-07 22:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-07 22:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-07 22:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-07 22:49:07] 2.13.2.0 11666 51165 294196 153751 2 64 29412177 40960000 16452 16776704 0 100610602 99.758 58020339 35418 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-07 22:49:07] CVMFS is ok
[2025-12-07 22:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-07 22:49:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-07 22:49:07] Further information can be found at the LHC@home message board.
[2025-12-07 22:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-07 22:49:07] Checking for apptainer binary...
[2025-12-07 22:49:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-07 22:49:07] Running /usr/bin/apptainer --version
[2025-12-07 22:49:08] apptainer version 1.4.4-1.el9
[2025-12-07 22:49:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-07 22:49:08] c-211-33-2.aglt2.org
[2025-12-07 22:49:08] apptainer works
[2025-12-07 22:49:08] Set ATHENA_PROC_NUMBER=11
[2025-12-07 22:49:08] Set ATHENA_CORE_NUMBER=11
[2025-12-07 22:49:08] Starting ATLAS job with PandaID=6900587824
[2025-12-07 22:49:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 19:46:20]  *** The last 200 lines of the pilot log: ***
[2025-12-08 19:46:20] 2025-12-09 00:45:01,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:46:20] 2025-12-09 00:45:01,746 | INFO     | time since job start (75300s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:03,753 | INFO     | time since job start (75302s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:03,828 | INFO     | monitor loop #4734: job 0:6900587824 is in state 'finished'
[2025-12-08 19:46:20] 2025-12-09 00:45:03,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:46:20] 2025-12-09 00:45:05,762 | INFO     | time since job start (75304s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:06,341 | INFO     | monitor loop #4735: job 0:6900587824 is in state 'finished'
[2025-12-08 19:46:20] 2025-12-09 00:45:06,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:46:20] 2025-12-09 00:45:08,025 | INFO     | PID=3304951 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 19:46:20] 2025-12-09 00:45:08,025 | INFO     | .. there are 18 such processes running
[2025-12-08 19:46:20] 2025-12-09 00:45:08,857 | INFO     | monitor loop #4736: job 0:6900587824 is in state 'finished'
[2025-12-08 19:46:20] 2025-12-09 00:45:08,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:46:20] 2025-12-09 00:45:09,026 | INFO     | time since job start (75308s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:11,035 | INFO     | time since job start (75310s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:11,370 | INFO     | monitor loop #4737: job 0:6900587824 is in state 'finished'
[2025-12-08 19:46:20] 2025-12-09 00:45:11,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,042 | INFO     | time since job start (75312s) is within the limit (172800.0s)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,208 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-08 19:46:20] 2025-12-09 00:45:13,226 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2589.7922083333337
[2025-12-08 19:46:20] 2025-12-09 00:45:13,245 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6900587824/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,246 | INFO     | extracted standard info from prmon json
[2025-12-08 19:46:20] 2025-12-09 00:45:13,246 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 19:46:20] 2025-12-09 00:45:13,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 19:46:20] 2025-12-09 00:45:13,267 | INFO     | fitting pss+swap vs Time
[2025-12-08 19:46:20] 2025-12-09 00:45:13,270 | INFO     | sum of square deviations: 579808353787.2693
[2025-12-08 19:46:20] 2025-12-09 00:45:13,301 | INFO     | sum of deviations: 2274298801384.616
[2025-12-08 19:46:20] 2025-12-09 00:45:13,301 | INFO     | mean x: 1765203481.702922
[2025-12-08 19:46:20] 2025-12-09 00:45:13,301 | INFO     | mean y: 3331235.859577922
[2025-12-08 19:46:20] 2025-12-09 00:45:13,301 | INFO     | intersect: -6920681045.80868
[2025-12-08 19:46:20] 2025-12-09 00:45:13,303 | INFO     | chi2: 21.520280515027768
[2025-12-08 19:46:20] 2025-12-09 00:45:13,305 | INFO     | sum of square deviations: 572778017142.9054
[2025-12-08 19:46:20] 2025-12-09 00:45:13,336 | INFO     | sum of deviations: 2758283973872.1274
[2025-12-08 19:46:20] 2025-12-09 00:45:13,337 | INFO     | mean x: 1765203329.211899
[2025-12-08 19:46:20] 2025-12-09 00:45:13,337 | INFO     | mean y: 3341731.9494702527
[2025-12-08 19:46:20] 2025-12-09 00:45:13,337 | INFO     | intersect: -8497215041.995523
[2025-12-08 19:46:20] 2025-12-09 00:45:13,339 | INFO     | chi2: 18.06850776098415
[2025-12-08 19:46:20] 2025-12-09 00:45:13,339 | INFO     | current chi2=18.06850776098415 (change=16.039627139772733 %)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,339 | INFO     | right removable region: 1226
[2025-12-08 19:46:20] 2025-12-09 00:45:13,340 | INFO     | sum of square deviations: 572776361602.9055
[2025-12-08 19:46:20] 2025-12-09 00:45:13,371 | INFO     | sum of deviations: 1740768813672.2773
[2025-12-08 19:46:20] 2025-12-09 00:45:13,371 | INFO     | mean x: 1765203634.211899
[2025-12-08 19:46:20] 2025-12-09 00:45:13,371 | INFO     | mean y: 3342804.118174409
[2025-12-08 19:46:20] 2025-12-09 00:45:13,372 | INFO     | intersect: -5361423695.005194
[2025-12-08 19:46:20] 2025-12-09 00:45:13,373 | INFO     | chi2: 18.03085716020007
[2025-12-08 19:46:20] 2025-12-09 00:45:13,373 | INFO     | current chi2=18.03085716020007 (change=16.21458118257802 %)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,373 | INFO     | left removable region: 10
[2025-12-08 19:46:20] 2025-12-09 00:45:13,375 | INFO     | sum of square deviations: 557508824792.4452
[2025-12-08 19:46:20] 2025-12-09 00:45:13,416 | INFO     | sum of deviations: 2093404568109.9424
[2025-12-08 19:46:20] 2025-12-09 00:45:13,417 | INFO     | mean x: 1765203603.7286184
[2025-12-08 19:46:20] 2025-12-09 00:45:13,417 | INFO     | mean y: 3360335.757401316
[2025-12-08 19:46:20] 2025-12-09 00:45:13,421 | INFO     | intersect: -6624849162.20945
[2025-12-08 19:46:20] 2025-12-09 00:45:13,423 | INFO     | chi2: 13.258533273324076
[2025-12-08 19:46:20] 2025-12-09 00:45:13,423 | INFO     | current memory leak: 3.75 B/s (using 1216 data points, chi2=13.26)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,429 | INFO     | could have reported an average CPU frequency of 2582 MHz (45 samples)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | ..............................
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . Timing measurements:
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . get job = 0 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . initial setup = 5 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . payload setup = 40 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . stage-in = 0 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . payload execution = 75160 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . stage-out = 11 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | . log creation = 3 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,430 | INFO     | ..............................
[2025-12-08 19:46:20] 2025-12-09 00:45:13,567 | INFO     | 
[2025-12-08 19:46:20] 2025-12-09 00:45:13,567 | INFO     | job summary report
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | --------------------------------------------------
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | PanDA job id: 6900587824
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | task id: 47556185
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | errors: (none)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | pilot state: finished 
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | transexitcode: 0
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | exeerrorcode: 0
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | exeerrordiag: 
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | exitcode: 0
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | exitmsg: OK
[2025-12-08 19:46:20] 2025-12-09 00:45:13,568 | INFO     | cpuconsumptiontime: 279544 s
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | nevents: 1000
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | neventsw: 0
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | pid: 3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | pgrp: 3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | corecount: 11
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | event service: False
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | sizes: {0: 2284090, 1: 2284345, 2: 2284373, 13: 2284373, 24: 2284429, 30: 2284719, 34: 2284875, 75203: 2344710, 75204: 2344709, 75217: 2353843, 75248: 2354033}
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | --------------------------------------------------
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | 
[2025-12-08 19:46:20] 2025-12-09 00:45:13,569 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-08 19:46:20] 2025-12-09 00:45:13,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 19:46:20] 2025-12-09 00:45:13,605 | INFO     | job 6900587824 has completed (purged errors)
[2025-12-08 19:46:20] 2025-12-09 00:45:13,606 | INFO     | overall cleanup function is called
[2025-12-08 19:46:20] 2025-12-09 00:45:14,649 | INFO     | --- collectZombieJob: --- 10, [3314341]
[2025-12-08 19:46:20] 2025-12-09 00:45:14,649 | INFO     | zombie collector waiting for pid 3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:14,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 19:46:20] 2025-12-09 00:45:14,650 | INFO     | collected zombie processes
[2025-12-08 19:46:20] 2025-12-09 00:45:14,658 | INFO     | will attempt to kill all subprocesses of pid=3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:15,740 | INFO     | process IDs to be killed: [3314341] (in reverse order)
[2025-12-08 19:46:20] 2025-12-09 00:45:15,929 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 19:46:20] 2025-12-09 00:45:15,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 19:46:20] 2025-12-09 00:45:15,945 | INFO     | did not find any defunct processes belonging to 3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:15,961 | INFO     | did not find any defunct processes belonging to 3314341
[2025-12-08 19:46:20] 2025-12-09 00:45:15,962 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 19:46:20] 2025-12-09 00:45:15,962 | INFO     | ready for new job
[2025-12-08 19:46:20] 2025-12-09 00:45:15,962 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 19:46:20] 2025-12-09 00:45:15,970 | INFO     | ***************************************
[2025-12-08 19:46:20] 2025-12-09 00:45:15,970 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 19:46:20] 2025-12-09 00:45:15,970 | INFO     | ***************************************
[2025-12-08 19:46:20] 2025-12-09 00:45:15,970 | INFO     | 
[2025-12-08 19:46:20] 2025-12-09 00:45:15,977 | INFO     | architecture information:
[2025-12-08 19:46:20] 2025-12-09 00:45:15,978 | INFO     | executing command: cat /etc/os-release
[2025-12-08 19:46:20] 2025-12-09 00:45:16,088 | INFO     | cat /etc/os-release:
[2025-12-08 19:46:20] NAME="CentOS Linux"
[2025-12-08 19:46:20] VERSION="7 (Core)"
[2025-12-08 19:46:20] ID="centos"
[2025-12-08 19:46:20] ID_LIKE="rhel fedora"
[2025-12-08 19:46:20] VERSION_ID="7"
[2025-12-08 19:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 19:46:20] ANSI_COLOR="0;31"
[2025-12-08 19:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 19:46:20] HOME_URL="https://www.centos.org/"
[2025-12-08 19:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 19:46:20] 
[2025-12-08 19:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 19:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 19:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 19:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 19:46:20] 
[2025-12-08 19:46:20] 2025-12-09 00:45:16,089 | INFO     | ***************************************
[2025-12-08 19:46:20] 2025-12-09 00:45:16,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-08 19:46:20] 2025-12-09 00:45:16,666 | INFO     | sufficient remaining disk space (124024520704 B)
[2025-12-08 19:46:20] 2025-12-09 00:45:16,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 19:46:20] 2025-12-09 00:45:16,666 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 19:46:20] 2025-12-09 00:45:16,666 | INFO     | update_server=False
[2025-12-08 19:46:20] 2025-12-09 00:45:16,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 19:46:20] 2025-12-09 00:45:16,750 | INFO     | all job control threads have been joined
[2025-12-08 19:46:20] 2025-12-09 00:45:16,853 | INFO     | all data control threads have been joined
[2025-12-08 19:46:20] 2025-12-09 00:45:17,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 19:46:20] 2025-12-09 00:45:17,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 19:46:20] 2025-12-09 00:45:17,414 | INFO     | aborting loop
[2025-12-08 19:46:20] 2025-12-09 00:45:17,672 | INFO     | [job] retrieve thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,702 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,703 | INFO     | [data] copytool_in thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,756 | INFO     | [job] control thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,836 | INFO     | [payload] failed_post thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,859 | INFO     | [data] control thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:17,863 | INFO     | all payload control threads have been joined
[2025-12-08 19:46:20] 2025-12-09 00:45:18,202 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,203 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,203 | INFO     | [job] validate thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,209 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,421 | INFO     | [job] job monitor thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 19:46:20] 2025-12-09 00:45:18,869 | INFO     | [payload] control thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:18,874 | INFO     | [payload] validate_post thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:19,317 | INFO     | [data] copytool_out thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:19,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 19:46:20] 2025-12-09 00:45:19,622 | INFO     | [job] queue monitor thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:23,485 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 19:46:20] 2025-12-09 00:45:47,348 | INFO     | PID=3304951 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 19:46:20] 2025-12-09 00:45:47,348 | INFO     | .. there are 18 such processes running
[2025-12-08 19:46:20] 2025-12-09 00:45:47,348 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 19:46:20] 2025-12-09 00:45:47,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 19:46:20] 2025-12-09 00:45:47,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 19:46:20] 2025-12-09 00:46:13,097 | INFO     | [monitor] cgroup control has ended
[2025-12-08 19:46:20] 2025-12-09 00:46:14,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944989673280)>', '<ExcThread(monitor, started 139944488052480)>']
[2025-12-08 19:46:20] 2025-12-09 00:46:14,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 19:46:20] 2025-12-09 00:46:14,536 | INFO     | [monitor] control thread has ended
[2025-12-08 19:46:20] 2025-12-09 00:46:19,383 | INFO     | all workflow threads have been joined
[2025-12-08 19:46:20] 2025-12-09 00:46:19,383 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 19:46:20] 2025-12-09 00:46:19,384 | INFO     | traces error code: 0
[2025-12-08 19:46:20] 2025-12-09 00:46:19,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 19:46:20] 2025-12-09 00:46:19,839 [wrapper] ==== pilot stdout END ====
[2025-12-08 19:46:20] 2025-12-09 00:46:19,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 19:46:20] 2025-12-09 00:46:19,845 [wrapper] pilotpid: 3304951
[2025-12-08 19:46:20] 2025-12-09 00:46:19,848 [wrapper] Pilot exit status: 0
[2025-12-08 19:46:20] 2025-12-09 00:46:19,979 [wrapper] pandaids: 6900587824
[2025-12-08 19:46:20] 2025-12-09 00:46:20,125 [wrapper] cleanup supervisor_pilot 1447558 3304952
[2025-12-08 19:46:20] 2025-12-09 00:46:20,129 [wrapper] Test setup, not cleaning
[2025-12-08 19:46:20] 2025-12-09 00:46:20,132 [wrapper] apfmon messages muted
[2025-12-08 19:46:20] 2025-12-09 00:46:20,135 [wrapper] ==== wrapper stdout END ====
[2025-12-08 19:46:20] 2025-12-09 00:46:20,138 [wrapper] ==== wrapper stderr END ====
[2025-12-08 19:46:20]  *** Error codes and diagnostics ***
[2025-12-08 19:46:20]     "exeErrorCode": 0,
[2025-12-08 19:46:20]     "exeErrorDiag": "",
[2025-12-08 19:46:20]     "pilotErrorCode": 0,
[2025-12-08 19:46:20]     "pilotErrorDiag": "",
[2025-12-08 19:46:20]  *** Listing of results directory ***
[2025-12-08 19:46:20] total 1315784
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 19:58 pilot3.tar.gz
[2025-12-08 19:46:20] -rwx------. 1 boincer umatlas     36292 Nov 27 20:02 runpilot2-wrapper.sh
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 20:05 queuedata.json
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas       100 Dec  7 22:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 19:46:20] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  7 22:49 run_atlas
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas       105 Dec  7 22:49 job.xml
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas 408834269 Dec  7 22:49 EVNT.47483658._004426.pool.root.1
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas    590113 Dec  7 22:49 input.tar.gz
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas     15847 Dec  7 22:49 start_atlas.sh
[2025-12-08 19:46:20] drwxrwx--x. 2 boincer umatlas      4096 Dec  7 22:49 shared
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas         0 Dec  7 22:49 boinc_lockfile
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas      2788 Dec  7 22:49 pandaJob.out
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas        57 Dec  7 22:49 setup.sh.local
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas    981501 Dec  7 22:49 agis_schedconf.cvmfs.json
[2025-12-08 19:46:20] drwx------. 5 boincer umatlas      4096 Dec  7 22:50 pilot3
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas       533 Dec  8 19:05 boinc_task_state.xml
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas 909810473 Dec  8 19:43 HITS.47556185._001894.pool.root.1
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas      1061 Dec  8 19:44 memory_monitor_summary.json
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas   1516240 Dec  8 19:44 agis_ddmendpoints.agis.ALL.json
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas   2664763 Dec  8 19:44 log.47556185._001894.job.log.tgz.1
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas        95 Dec  8 19:44 pilot_heartbeat.json
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas      8631 Dec  8 19:45 heartbeat.json
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas      4825 Dec  8 19:46 pilotlog.txt
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas      6881 Dec  8 19:46 init_data.xml
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas      8192 Dec  8 19:46 boinc_mmap_file
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas   9739312 Dec  8 19:46 log.47556185._001894.job.log.1
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas        29 Dec  8 19:46 wrapper_checkpoint.txt
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas       353 Dec  8 19:46 output.list
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas       620 Dec  8 19:46 runtime_log
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas  12421120 Dec  8 19:46 result.tar.gz
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas      9355 Dec  8 19:46 runtime_log.err
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas       662 Dec  8 19:46 HNBNDmX31i8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmw7KKDmmg9o1n.diag
[2025-12-08 19:46:20] -rw-r--r--. 1 boincer umatlas     21897 Dec  8 19:46 stderr.txt
[2025-12-08 19:46:20] HITS file was successfully produced:
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas 909810473 Dec  8 19:43 shared/HITS.pool.root.1
[2025-12-08 19:46:20]  *** Contents of shared directory: ***
[2025-12-08 19:46:20] total 1300480
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas 408834269 Dec  7 22:49 ATLAS.root_0
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas    590113 Dec  7 22:49 input.tar.gz
[2025-12-08 19:46:20] -rw-r--r--. 2 boincer umatlas     15847 Dec  7 22:49 start_atlas.sh
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas 909810473 Dec  8 19:43 HITS.pool.root.1
[2025-12-08 19:46:20] -rw-------. 1 boincer umatlas  12421120 Dec  8 19:46 result.tar.gz
19:46:22 (3299878): run_atlas exited; CPU time 280850.881901
19:46:22 (3299878): called boinc_finish(0)

</stderr_txt>
]]>

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