Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:40:56 (2238761): wrapper (7.7.26015): starting
15:40:56 (2238761): wrapper: running run_atlas (--nthreads 12)
[2025-12-07 15:40:56] Arguments: --nthreads 12
[2025-12-07 15:40:56] Threads: 12
[2025-12-07 15:40:56] Checking for CVMFS
[2025-12-07 15:40:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-07 15:40:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-07 15:40:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-07 15:40:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-07 15:40:59] 2.13.3.0 9890 46248 350892 153740 2 358 20735400 32935937 26739 16776704 0 247877117 99.744 157197491 33493 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-07 15:40:59] CVMFS is ok
[2025-12-07 15:40:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-07 15:40:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-07 15:40:59] Further information can be found at the LHC@home message board.
[2025-12-07 15:40:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-07 15:40:59] Checking for apptainer binary...
[2025-12-07 15:40:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-07 15:40:59] Running /usr/bin/apptainer --version
[2025-12-07 15:40:59] apptainer version 1.4.4-1.el9
[2025-12-07 15:40:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-07 15:40:59] c-8-36.aglt2.org
[2025-12-07 15:40:59] apptainer works
[2025-12-07 15:40:59] Set ATHENA_PROC_NUMBER=12
[2025-12-07 15:40:59] Set ATHENA_CORE_NUMBER=12
[2025-12-07 15:41:00] Starting ATLAS job with PandaID=6898378495
[2025-12-07 15:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 14:48:24]  *** The last 200 lines of the pilot log: ***
[2025-12-09 14:48:24] 2025-12-09 19:47:36,564 | INFO     | monitor loop #7149: job 0:6898378495 is in state 'finished'
[2025-12-09 14:48:24] 2025-12-09 19:47:36,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:48:24] 2025-12-09 19:47:36,712 | INFO     | time since job start (169526s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:38,929 | INFO     | PID=2243436 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-09 14:48:24] 2025-12-09 19:47:38,929 | INFO     | .. there are 33 such processes running
[2025-12-09 14:48:24] 2025-12-09 19:47:39,073 | INFO     | monitor loop #7150: job 0:6898378495 is in state 'finished'
[2025-12-09 14:48:24] 2025-12-09 19:47:39,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:48:24] 2025-12-09 19:47:39,958 | INFO     | time since job start (169529s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:41,582 | INFO     | monitor loop #7151: job 0:6898378495 is in state 'finished'
[2025-12-09 14:48:24] 2025-12-09 19:47:41,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:48:24] 2025-12-09 19:47:41,965 | INFO     | time since job start (169531s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:43,991 | INFO     | time since job start (169533s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:44,106 | INFO     | monitor loop #7152: job 0:6898378495 is in state 'finished'
[2025-12-09 14:48:24] 2025-12-09 19:47:44,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:48:24] 2025-12-09 19:47:45,998 | INFO     | time since job start (169535s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:46,022 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-09 14:48:24] 2025-12-09 19:47:46,028 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1881249999997
[2025-12-09 14:48:24] 2025-12-09 19:47:46,034 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378495/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 14:48:24] 2025-12-09 19:47:46,035 | INFO     | extracted standard info from prmon json
[2025-12-09 14:48:24] 2025-12-09 19:47:46,035 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 14:48:24] 2025-12-09 19:47:46,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 14:48:24] 2025-12-09 19:47:46,080 | INFO     | fitting pss+swap vs Time
[2025-12-09 14:48:24] 2025-12-09 19:47:46,084 | INFO     | sum of square deviations: 6640256853913.8
[2025-12-09 14:48:24] 2025-12-09 19:47:46,704 | INFO     | monitor loop #7153: job 0:6898378495 is in state 'finished'
[2025-12-09 14:48:24] 2025-12-09 19:47:46,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 14:48:24] 2025-12-09 19:47:46,706 | INFO     | sum of deviations: 23465002315653.64
[2025-12-09 14:48:24] 2025-12-09 19:47:46,706 | INFO     | mean x: 1765224969.228664
[2025-12-09 14:48:24] 2025-12-09 19:47:46,707 | INFO     | mean y: 3594759.0950666186
[2025-12-09 14:48:24] 2025-12-09 19:47:46,707 | INFO     | intersect: -6234267555.852356
[2025-12-09 14:48:24] 2025-12-09 19:47:46,711 | INFO     | chi2: 17.76172108043613
[2025-12-09 14:48:24] 2025-12-09 19:47:46,719 | INFO     | sum of square deviations: 6604459189014.63
[2025-12-09 14:48:24] 2025-12-09 19:47:46,910 | INFO     | sum of deviations: 24679154058722.688
[2025-12-09 14:48:24] 2025-12-09 19:47:46,911 | INFO     | mean x: 1765224816.7435064
[2025-12-09 14:48:24] 2025-12-09 19:47:46,911 | INFO     | mean y: 3599930.481962482
[2025-12-09 14:48:24] 2025-12-09 19:47:46,911 | INFO     | intersect: -6592588183.323796
[2025-12-09 14:48:24] 2025-12-09 19:47:46,914 | INFO     | chi2: 14.31951771582872
[2025-12-09 14:48:24] 2025-12-09 19:47:46,915 | INFO     | current chi2=14.31951771582872 (change=19.37989764065638 %)
[2025-12-09 14:48:24] 2025-12-09 19:47:46,915 | INFO     | right removable region: 2771
[2025-12-09 14:48:24] 2025-12-09 19:47:46,918 | INFO     | sum of square deviations: 6604445249904.628
[2025-12-09 14:48:24] 2025-12-09 19:47:47,145 | INFO     | sum of deviations: 22091620145316.902
[2025-12-09 14:48:24] 2025-12-09 19:47:47,145 | INFO     | mean x: 1765225121.7435064
[2025-12-09 14:48:24] 2025-12-09 19:47:47,146 | INFO     | mean y: 3600607.618686869
[2025-12-09 14:48:24] 2025-12-09 19:47:47,146 | INFO     | intersect: -5901010814.679267
[2025-12-09 14:48:24] 2025-12-09 19:47:47,153 | INFO     | chi2: 13.76356625964718
[2025-12-09 14:48:24] 2025-12-09 19:47:47,154 | INFO     | current chi2=13.76356625964718 (change=22.50995161270023 %)
[2025-12-09 14:48:24] 2025-12-09 19:47:47,154 | INFO     | left removable region: 10
[2025-12-09 14:48:24] 2025-12-09 19:47:47,158 | INFO     | sum of square deviations: 6526129963492.145
[2025-12-09 14:48:24] 2025-12-09 19:47:47,484 | INFO     | sum of deviations: 22535086893915.836
[2025-12-09 14:48:24] 2025-12-09 19:47:47,484 | INFO     | mean x: 1765225091.276349
[2025-12-09 14:48:24] 2025-12-09 19:47:47,484 | INFO     | mean y: 3611331.854762767
[2025-12-09 14:48:24] 2025-12-09 19:47:47,485 | INFO     | intersect: -6091808318.345852
[2025-12-09 14:48:24] 2025-12-09 19:47:47,504 | INFO     | chi2: 7.412432033420854
[2025-12-09 14:48:24] 2025-12-09 19:47:47,505 | INFO     | current memory leak: 3.45 B/s (using 2761 data points, chi2=7.41)
[2025-12-09 14:48:24] 2025-12-09 19:47:47,507 | INFO     | could have reported an average CPU frequency of 2600 MHz (94 samples)
[2025-12-09 14:48:24] 2025-12-09 19:47:47,507 | INFO     | ..............................
[2025-12-09 14:48:24] 2025-12-09 19:47:47,507 | INFO     | . Timing measurements:
[2025-12-09 14:48:24] 2025-12-09 19:47:47,507 | INFO     | . get job = 0 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,507 | INFO     | . initial setup = 6 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | . payload setup = 38 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | . stage-in = 0 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | . payload execution = 169378 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | . stage-out = 7 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | . log creation = 2 s
[2025-12-09 14:48:24] 2025-12-09 19:47:47,508 | INFO     | ..............................
[2025-12-09 14:48:24] 2025-12-09 19:47:48,011 | INFO     | time since job start (169538s) is within the limit (174528.0s)
[2025-12-09 14:48:24] 2025-12-09 19:47:48,223 | INFO     | 
[2025-12-09 14:48:24] 2025-12-09 19:47:48,223 | INFO     | job summary report
[2025-12-09 14:48:24] 2025-12-09 19:47:48,223 | INFO     | --------------------------------------------------
[2025-12-09 14:48:24] 2025-12-09 19:47:48,223 | INFO     | PanDA job id: 6898378495
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | task id: 47556161
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | errors: (none)
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | pilot state: finished 
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | transexitcode: 0
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | exeerrorcode: 0
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | exeerrordiag: 
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | exitcode: 0
[2025-12-09 14:48:24] 2025-12-09 19:47:48,224 | INFO     | exitmsg: OK
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | cpuconsumptiontime: 300405 s
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | nevents: 1000
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | neventsw: 0
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | pid: 2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | pgrp: 2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | corecount: 12
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | event service: False
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | sizes: {0: 2284242, 1: 2284326, 2: 2284525, 13: 2284525, 24: 2284581, 35: 2284609, 37: 2285027, 46: 2285055, 169422: 2381041, 169431: 2390091, 169456: 2390281}
[2025-12-09 14:48:24] 2025-12-09 19:47:48,225 | INFO     | --------------------------------------------------
[2025-12-09 14:48:24] 2025-12-09 19:47:48,226 | INFO     | 
[2025-12-09 14:48:24] 2025-12-09 19:47:48,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 14:48:24] 2025-12-09 19:47:48,347 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 14:48:24] 2025-12-09 19:47:48,349 | INFO     | job 6898378495 has completed (purged errors)
[2025-12-09 14:48:24] 2025-12-09 19:47:48,350 | INFO     | overall cleanup function is called
[2025-12-09 14:48:24] 2025-12-09 19:47:49,384 | INFO     | --- collectZombieJob: --- 10, [2253266]
[2025-12-09 14:48:24] 2025-12-09 19:47:49,385 | INFO     | zombie collector waiting for pid 2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:49,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 14:48:24] 2025-12-09 19:47:49,385 | INFO     | collected zombie processes
[2025-12-09 14:48:24] 2025-12-09 19:47:49,386 | INFO     | will attempt to kill all subprocesses of pid=2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:49,923 | INFO     | process IDs to be killed: [2253266] (in reverse order)
[2025-12-09 14:48:24] 2025-12-09 19:47:50,182 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 14:48:24] 2025-12-09 19:47:50,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 14:48:24] 2025-12-09 19:47:50,215 | INFO     | did not find any defunct processes belonging to 2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:50,242 | INFO     | did not find any defunct processes belonging to 2253266
[2025-12-09 14:48:24] 2025-12-09 19:47:50,242 | INFO     | ready for new job
[2025-12-09 14:48:24] 2025-12-09 19:47:50,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 14:48:24] 2025-12-09 19:47:50,259 | INFO     | ***************************************
[2025-12-09 14:48:24] 2025-12-09 19:47:50,259 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-09 14:48:24] 2025-12-09 19:47:50,259 | INFO     | ***************************************
[2025-12-09 14:48:24] 2025-12-09 19:47:50,259 | INFO     | 
[2025-12-09 14:48:24] 2025-12-09 19:47:50,265 | INFO     | architecture information:
[2025-12-09 14:48:24] 2025-12-09 19:47:50,269 | INFO     | executing command: cat /etc/os-release
[2025-12-09 14:48:24] 2025-12-09 19:47:50,447 | INFO     | cat /etc/os-release:
[2025-12-09 14:48:24] NAME="CentOS Linux"
[2025-12-09 14:48:24] VERSION="7 (Core)"
[2025-12-09 14:48:24] ID="centos"
[2025-12-09 14:48:24] ID_LIKE="rhel fedora"
[2025-12-09 14:48:24] VERSION_ID="7"
[2025-12-09 14:48:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 14:48:24] ANSI_COLOR="0;31"
[2025-12-09 14:48:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 14:48:24] HOME_URL="https://www.centos.org/"
[2025-12-09 14:48:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 14:48:24] 
[2025-12-09 14:48:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 14:48:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 14:48:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 14:48:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 14:48:24] 
[2025-12-09 14:48:24] 2025-12-09 19:47:50,448 | INFO     | ***************************************
[2025-12-09 14:48:24] 2025-12-09 19:47:50,950 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 14:48:24] 2025-12-09 19:47:50,990 | INFO     | sufficient remaining disk space (74014785536 B)
[2025-12-09 14:48:24] 2025-12-09 19:47:50,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 14:48:24] 2025-12-09 19:47:50,991 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 14:48:24] 2025-12-09 19:47:50,991 | INFO     | update_server=False
[2025-12-09 14:48:24] 2025-12-09 19:47:50,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 14:48:24] 2025-12-09 19:47:50,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:48:24] 2025-12-09 19:47:50,994 | INFO     | aborting loop
[2025-12-09 14:48:24] 2025-12-09 19:47:51,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 14:48:24] 2025-12-09 19:47:51,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 14:48:24] 2025-12-09 19:47:51,994 | INFO     | all data control threads have been joined
[2025-12-09 14:48:24] 2025-12-09 19:47:51,997 | INFO     | [job] retrieve thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,001 | INFO     | [job] job monitor thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,082 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,312 | INFO     | all job control threads have been joined
[2025-12-09 14:48:24] 2025-12-09 19:47:52,401 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,526 | INFO     | all payload control threads have been joined
[2025-12-09 14:48:24] 2025-12-09 19:47:52,688 | INFO     | [payload] validate_post thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,902 | INFO     | [job] validate thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:52,938 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 14:48:24] 2025-12-09 19:47:53,006 | INFO     | [data] control thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,223 | INFO     | [data] copytool_out thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,318 | INFO     | [job] control thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,325 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,427 | INFO     | [payload] failed_post thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,430 | INFO     | [data] copytool_in thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,532 | INFO     | [payload] control thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:53,944 | INFO     | [job] queue monitor thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:55,680 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 14:48:24] 2025-12-09 19:47:57,954 | INFO     | [monitor] cgroup control has ended
[2025-12-09 14:48:24] 2025-12-09 19:47:58,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695225030464)>', '<ExcThread(monitor, started 139694700467968)>']
[2025-12-09 14:48:24] 2025-12-09 19:48:03,987 | INFO     | all workflow threads have been joined
[2025-12-09 14:48:24] 2025-12-09 19:48:03,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 14:48:24] 2025-12-09 19:48:03,987 | INFO     | traces error code: 0
[2025-12-09 14:48:24] 2025-12-09 19:48:03,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 14:48:24] 2025-12-09 19:48:23,027 | INFO     | PID=2243436 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-09 14:48:24] 2025-12-09 19:48:23,028 | INFO     | .. there are 33 such processes running
[2025-12-09 14:48:24] 2025-12-09 19:48:23,029 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 14:48:24] 2025-12-09 19:48:23,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 14:48:24] 2025-12-09 19:48:23,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 14:48:24] 2025-12-09 19:48:23,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 14:48:24] 2025-12-09 19:48:23,029 | INFO     | [monitor] control thread has ended
[2025-12-09 14:48:24] 2025-12-09 19:48:23,226 [wrapper] ==== pilot stdout END ====
[2025-12-09 14:48:24] 2025-12-09 19:48:23,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 14:48:24] 2025-12-09 19:48:23,267 [wrapper] pilotpid: 2243436
[2025-12-09 14:48:24] 2025-12-09 19:48:23,296 [wrapper] Pilot exit status: 0
[2025-12-09 14:48:24] 2025-12-09 19:48:23,448 [wrapper] pandaids: 6898378495
[2025-12-09 14:48:24] 2025-12-09 19:48:23,635 [wrapper] cleanup supervisor_pilot  986817 2243437
[2025-12-09 14:48:24] 2025-12-09 19:48:23,640 [wrapper] Test setup, not cleaning
[2025-12-09 14:48:24] 2025-12-09 19:48:23,695 [wrapper] apfmon messages muted
[2025-12-09 14:48:24] 2025-12-09 19:48:23,698 [wrapper] ==== wrapper stdout END ====
[2025-12-09 14:48:24] 2025-12-09 19:48:23,700 [wrapper] ==== wrapper stderr END ====
[2025-12-09 14:48:24]  *** Error codes and diagnostics ***
[2025-12-09 14:48:24]     "exeErrorCode": 0,
[2025-12-09 14:48:24]     "exeErrorDiag": "",
[2025-12-09 14:48:24]     "pilotErrorCode": 0,
[2025-12-09 14:48:24]     "pilotErrorDiag": "",
[2025-12-09 14:48:24]  *** Listing of results directory ***
[2025-12-09 14:48:24] total 1331384
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas    579449 Dec  7 15:12 pilot3.tar.gz
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas      5112 Dec  7 15:39 queuedata.json
[2025-12-09 14:48:24] -rwx------. 1 boincer umatlas     36292 Dec  7 15:39 runpilot2-wrapper.sh
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas       100 Dec  7 15:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 14:48:24] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  7 15:40 run_atlas
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas       105 Dec  7 15:40 job.xml
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas 410607159 Dec  7 15:40 EVNT.47483658._002613.pool.root.1
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas     15847 Dec  7 15:40 start_atlas.sh
[2025-12-09 14:48:24] drwxrwx--x. 2 boincer umatlas      4096 Dec  7 15:40 shared
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas    592582 Dec  7 15:40 input.tar.gz
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas         0 Dec  7 15:40 boinc_lockfile
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas      2787 Dec  7 15:40 pandaJob.out
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas        57 Dec  7 15:41 setup.sh.local
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas    981509 Dec  7 15:42 agis_schedconf.cvmfs.json
[2025-12-09 14:48:24] drwx------. 5 boincer umatlas      4096 Dec  7 15:42 pilot3
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas       534 Dec  9 14:22 boinc_task_state.xml
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas 907257859 Dec  9 14:46 HITS.47556161._005957.pool.root.1
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas      6661 Dec  9 14:47 init_data.xml
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas      1064 Dec  9 14:47 memory_monitor_summary.json
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas   1516240 Dec  9 14:47 agis_ddmendpoints.agis.ALL.json
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas   3555596 Dec  9 14:47 log.47556161._005957.job.log.tgz.1
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas      8624 Dec  9 14:47 heartbeat.json
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas      8192 Dec  9 14:48 boinc_mmap_file
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas        30 Dec  9 14:48 wrapper_checkpoint.txt
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas        95 Dec  9 14:48 pilot_heartbeat.json
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas       823 Dec  9 14:48 pilotlog.txt
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas  17225879 Dec  9 14:48 log.47556161._005957.job.log.1
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas       353 Dec  9 14:48 output.list
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas       620 Dec  9 14:48 runtime_log
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas  20797440 Dec  9 14:48 result.tar.gz
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas       662 Dec  9 14:48 ZpJMDm6iam8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6nMKDmaPCCCo.diag
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas      9336 Dec  9 14:48 runtime_log.err
[2025-12-09 14:48:24] -rw-r--r--. 1 boincer umatlas     21791 Dec  9 14:48 stderr.txt
[2025-12-09 14:48:24] HITS file was successfully produced:
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas 907257859 Dec  9 14:46 shared/HITS.pool.root.1
[2025-12-09 14:48:24]  *** Contents of shared directory: ***
[2025-12-09 14:48:24] total 1307896
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas 410607159 Dec  7 15:40 ATLAS.root_0
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas     15847 Dec  7 15:40 start_atlas.sh
[2025-12-09 14:48:24] -rw-r--r--. 2 boincer umatlas    592582 Dec  7 15:40 input.tar.gz
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas 907257859 Dec  9 14:46 HITS.pool.root.1
[2025-12-09 14:48:24] -rw-------. 1 boincer umatlas  20797440 Dec  9 14:48 result.tar.gz
14:48:26 (2238761): run_atlas exited; CPU time 304465.091417
14:48:26 (2238761): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN