Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:22:41 (775098): wrapper (7.7.26015): starting
06:22:41 (775098): wrapper: running run_atlas (--nthreads 4)
[2025-12-07 06:22:41] Arguments: --nthreads 4
[2025-12-07 06:22:41] Threads: 4
[2025-12-07 06:22:41] Checking for CVMFS
[2025-12-07 06:22:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-07 06:22:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-07 06:22:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-07 06:22:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-07 06:22:43] 2.9.2.0 775294 0 30004 153717 4 1 29750362 36864001 0 130560 0 0 0.000 1292 10336 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-07 06:22:43] CVMFS is ok
[2025-12-07 06:22:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-07 06:22:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-07 06:22:44] Further information can be found at the LHC@home message board.
[2025-12-07 06:22:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-07 06:22:44] Checking for apptainer binary...
[2025-12-07 06:22:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-07 06:22:44] Running /usr/bin/apptainer --version
[2025-12-07 06:22:44] apptainer version 1.4.1-1.1
[2025-12-07 06:22:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-07 06:22:44] thA315b
[2025-12-07 06:22:44] apptainer works
[2025-12-07 06:22:44] Set ATHENA_PROC_NUMBER=4
[2025-12-07 06:22:44] Set ATHENA_CORE_NUMBER=4
[2025-12-07 06:22:44] Starting ATLAS job with PandaID=6899499790
[2025-12-07 06:22:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-07 12:23:45]  *** The last 200 lines of the pilot log: ***
[2025-12-07 12:23:45] 2025-12-07 11:23:13,855 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-07 12:23:45] 2025-12-07 11:23:13,856 | INFO     | did not find any defunct processes belonging to 786046
[2025-12-07 12:23:45] 2025-12-07 11:23:13,858 | INFO     | did not find any defunct processes belonging to 786046
[2025-12-07 12:23:45] 2025-12-07 11:23:13,858 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-07 12:23:45] 2025-12-07 11:23:13,858 | INFO     | ready for new job
[2025-12-07 12:23:45] 2025-12-07 11:23:13,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | ***************************************
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | ***************************************
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | 
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | architecture information:
[2025-12-07 12:23:45] 2025-12-07 11:23:13,860 | INFO     | executing command: cat /etc/os-release
[2025-12-07 12:23:45] 2025-12-07 11:23:13,870 | INFO     | cat /etc/os-release:
[2025-12-07 12:23:45] NAME="CentOS Linux"
[2025-12-07 12:23:45] VERSION="7 (Core)"
[2025-12-07 12:23:45] ID="centos"
[2025-12-07 12:23:45] ID_LIKE="rhel fedora"
[2025-12-07 12:23:45] VERSION_ID="7"
[2025-12-07 12:23:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-07 12:23:45] ANSI_COLOR="0;31"
[2025-12-07 12:23:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-07 12:23:45] HOME_URL="https://www.centos.org/"
[2025-12-07 12:23:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-07 12:23:45] 
[2025-12-07 12:23:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-07 12:23:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-07 12:23:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-07 12:23:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-07 12:23:45] 
[2025-12-07 12:23:45] 2025-12-07 11:23:13,870 | INFO     | ***************************************
[2025-12-07 12:23:45] 2025-12-07 11:23:14,373 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | INFO     | sufficient remaining disk space (330245865472 B)
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | INFO     | current server update state: UPDATING_FINAL
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | INFO     | update_server=False
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | INFO     | aborting loop
[2025-12-07 12:23:45] 2025-12-07 11:23:14,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-07 12:23:45] 2025-12-07 11:23:15,071 | INFO     | all payload control threads have been joined
[2025-12-07 12:23:45] 2025-12-07 11:23:15,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-07 12:23:45] 2025-12-07 11:23:15,338 | INFO     | all data control threads have been joined
[2025-12-07 12:23:45] 2025-12-07 11:23:15,392 | INFO     | [job] job monitor thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:15,392 | INFO     | [job] retrieve thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:15,393 | INFO     | [job] queue monitor thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:15,683 | INFO     | [payload] execute_payloads thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:15,881 | INFO     | all job control threads have been joined
[2025-12-07 12:23:45] 2025-12-07 11:23:16,077 | INFO     | [payload] control thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,149 | INFO     | [payload] failed_post thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,299 | INFO     | [data] copytool_in thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-07 12:23:45] 2025-12-07 11:23:16,306 | INFO     | [job] validate thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,343 | INFO     | [data] control thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,429 | INFO     | [job] create_data_payload thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,432 | INFO     | [payload] validate_pre thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,693 | INFO     | [payload] validate_post thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:16,887 | INFO     | [job] control thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:17,175 | INFO     | [data] copytool_out thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:20,306 | INFO     | [data] queue_monitor thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:20,757 | INFO     | [monitor] cgroup control has ended
[2025-12-07 12:23:45] 2025-12-07 11:23:24,485 | INFO     | job.realtimelogging is not enabled
[2025-12-07 12:23:45] 2025-12-07 11:23:25,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-07 12:23:45] 2025-12-07 11:23:26,284 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311961782080)>', '<ExcThread(monitor, started 140311313495808)>']
[2025-12-07 12:23:45] 2025-12-07 11:23:31,301 | INFO     | all workflow threads have been joined
[2025-12-07 12:23:45] 2025-12-07 11:23:31,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-07 12:23:45] 2025-12-07 11:23:31,301 | INFO     | traces error code: 0
[2025-12-07 12:23:45] 2025-12-07 11:23:31,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | INFO     | PID=779466 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | INFO     | found 0 job(s) in 20 queues
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-07 12:23:45] 2025-12-07 11:23:45,072 | INFO     | [monitor] control thread has ended
[2025-12-07 12:23:45] 2025-12-07 11:23:45,123 [wrapper] ==== pilot stdout END ====
[2025-12-07 12:23:45] 2025-12-07 11:23:45,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-07 12:23:45] 2025-12-07 11:23:45,128 [wrapper] pilotpid: 779466
[2025-12-07 12:23:45] 2025-12-07 11:23:45,131 [wrapper] Pilot exit status: 0
[2025-12-07 12:23:45] 2025-12-07 11:23:45,140 [wrapper] pandaids: 6899499790
[2025-12-07 12:23:45] 2025-12-07 11:23:45,158 [wrapper] cleanup supervisor_pilot  824167 779467
[2025-12-07 12:23:45] 2025-12-07 11:23:45,160 [wrapper] Test setup, not cleaning
[2025-12-07 12:23:45] 2025-12-07 11:23:45,163 [wrapper] apfmon messages muted
[2025-12-07 12:23:45] 2025-12-07 11:23:45,166 [wrapper] ==== wrapper stdout END ====
[2025-12-07 12:23:45] 2025-12-07 11:23:45,168 [wrapper] ==== wrapper stderr END ====
[2025-12-07 12:23:45]  *** Error codes and diagnostics ***
[2025-12-07 12:23:45]     "exeErrorCode": 0,
[2025-12-07 12:23:45]     "exeErrorDiag": "",
[2025-12-07 12:23:45]     "pilotErrorCode": 0,
[2025-12-07 12:23:45]     "pilotErrorDiag": "",
[2025-12-07 12:23:45]  *** Listing of results directory ***
[2025-12-07 12:23:45] total 1299528
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-07 12:23:45] -rwx------ 1 boinc boinc     36292 Nov 27 09:46 runpilot2-wrapper.sh
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:46 queuedata.json
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc       100 Dec  7 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-07 12:23:45] -rwxr-xr-x 1 boinc boinc      7986 Dec  7 06:22 run_atlas
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc       105 Dec  7 06:22 job.xml
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc 405883611 Dec  7 06:22 EVNT.47483658._003360.pool.root.1
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc    590103 Dec  7 06:22 input.tar.gz
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc     15847 Dec  7 06:22 start_atlas.sh
[2025-12-07 12:23:45] drwxrwx--x 2 boinc boinc      4096 Dec  7 06:22 shared
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc         0 Dec  7 06:22 boinc_setup_complete
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc      6444 Dec  7 06:22 init_data.xml
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc         0 Dec  7 06:22 boinc_lockfile
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc      2787 Dec  7 06:22 pandaJob.out
[2025-12-07 12:23:45] -rw------- 1 boinc boinc    981459 Dec  7 06:22 agis_schedconf.cvmfs.json
[2025-12-07 12:23:45] drwx------ 5 boinc boinc      4096 Dec  7 06:22 pilot3
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc       531 Dec  7 12:18 boinc_task_state.xml
[2025-12-07 12:23:45] -rw------- 1 boinc boinc 912420909 Dec  7 12:22 HITS.47556173._003162.pool.root.1
[2025-12-07 12:23:45] -rw------- 1 boinc boinc        95 Dec  7 12:22 pilot_heartbeat.json
[2025-12-07 12:23:45] -rw------- 1 boinc boinc      1021 Dec  7 12:22 memory_monitor_summary.json
[2025-12-07 12:23:45] -rw------- 1 boinc boinc   1516240 Dec  7 12:23 agis_ddmendpoints.agis.ALL.json
[2025-12-07 12:23:45] -rw------- 1 boinc boinc   1209508 Dec  7 12:23 log.47556173._003162.job.log.tgz.1
[2025-12-07 12:23:45] -rw------- 1 boinc boinc      8575 Dec  7 12:23 heartbeat.json
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc      8192 Dec  7 12:23 boinc_mmap_file
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc        28 Dec  7 12:23 wrapper_checkpoint.txt
[2025-12-07 12:23:45] -rw------- 1 boinc boinc       746 Dec  7 12:23 pilotlog.txt
[2025-12-07 12:23:45] -rw------- 1 boinc boinc   3048023 Dec  7 12:23 log.47556173._003162.job.log.1
[2025-12-07 12:23:45] -rw------- 1 boinc boinc       353 Dec  7 12:23 output.list
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc       620 Dec  7 12:23 runtime_log
[2025-12-07 12:23:45] -rw------- 1 boinc boinc   4280320 Dec  7 12:23 result.tar.gz
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc      8903 Dec  7 12:23 runtime_log.err
[2025-12-07 12:23:45] -rw------- 1 boinc boinc       666 Dec  7 12:23 WfgLDm4omi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzkNKDmOD0YRo.diag
[2025-12-07 12:23:45] -rw-r--r-- 1 boinc boinc     10161 Dec  7 12:23 stderr.txt
[2025-12-07 12:23:45] HITS file was successfully produced:
[2025-12-07 12:23:45] -rw------- 1 boinc boinc 912420909 Dec  7 12:22 shared/HITS.pool.root.1
[2025-12-07 12:23:45]  *** Contents of shared directory: ***
[2025-12-07 12:23:45] total 1292196
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc 405883611 Dec  7 06:22 ATLAS.root_0
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc    590103 Dec  7 06:22 input.tar.gz
[2025-12-07 12:23:45] -rw-r--r-- 2 boinc boinc     15847 Dec  7 06:22 start_atlas.sh
[2025-12-07 12:23:45] -rw------- 1 boinc boinc 912420909 Dec  7 12:22 HITS.pool.root.1
[2025-12-07 12:23:45] -rw------- 1 boinc boinc   4280320 Dec  7 12:23 result.tar.gz
12:23:46 (775098): run_atlas exited; CPU time 84214.583011
12:23:46 (775098): called boinc_finish(0)

</stderr_txt>
]]>

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