Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:19:42 (13721): wrapper (7.7.26015): starting
20:19:42 (13721): wrapper: running run_atlas (--nthreads 8)
[2025-12-06 20:19:42] Arguments: --nthreads 8
[2025-12-06 20:19:42] Threads: 8
[2025-12-06 20:19:42] Checking for CVMFS
[2025-12-06 20:19:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-06 20:19:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-06 20:19:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-06 20:19:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-06 20:19:43] 2.11.2.0 2908 185032 90228 153710 3 1 14368319 20275200 1 130560 2 73007946 99.937 8776301 26371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-06 20:19:43] CVMFS is ok
[2025-12-06 20:19:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 20:19:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-06 20:19:43] Further information can be found at the LHC@home message board.
[2025-12-06 20:19:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 20:19:43] Checking for apptainer binary...
[2025-12-06 20:19:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-06 20:19:43] Running /usr/bin/apptainer --version
[2025-12-06 20:19:43] apptainer version 1.3.2-1.el7
[2025-12-06 20:19:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 20:19:45] c-115-5.aglt2.org
[2025-12-06 20:19:45] apptainer works
[2025-12-06 20:19:45] Set ATHENA_PROC_NUMBER=8
[2025-12-06 20:19:45] Set ATHENA_CORE_NUMBER=8
[2025-12-06 20:19:45] Starting ATLAS job with PandaID=6920421863
[2025-12-06 20:19:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:46:14 (8355): wrapper (7.7.26015): starting
20:46:14 (8355): wrapper: running run_atlas (--nthreads 8)
[2025-12-06 20:46:14] Arguments: --nthreads 8
[2025-12-06 20:46:14] Threads: 8
[2025-12-06 20:46:14] This job has been restarted, cleaning up previous attempt
[2025-12-06 20:46:14] Checking for CVMFS
[2025-12-06 20:46:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-06 20:46:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-06 20:46:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-06 20:46:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-06 20:46:14] 2.11.2.0 2908 185058 90964 153710 1 188 14413245 20275201 1 130560 2 73068692 99.937 8776384 26371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-06 20:46:14] CVMFS is ok
[2025-12-06 20:46:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 20:46:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-06 20:46:14] Further information can be found at the LHC@home message board.
[2025-12-06 20:46:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 20:46:14] Checking for apptainer binary...
[2025-12-06 20:46:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-06 20:46:14] Running /usr/bin/apptainer --version
[2025-12-06 20:46:14] apptainer version 1.3.2-1.el7
[2025-12-06 20:46:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 20:46:16] c-115-5.aglt2.org
[2025-12-06 20:46:16] apptainer works
[2025-12-06 20:46:16] Set ATHENA_PROC_NUMBER=8
[2025-12-06 20:46:16] Set ATHENA_CORE_NUMBER=8
[2025-12-06 20:46:16] Starting ATLAS job with PandaID=6920421863
[2025-12-06 20:46:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 22:40:53]  *** The last 200 lines of the pilot log: ***
[2025-12-06 22:40:53] 2025-12-07 03:40:19,011 | INFO     | monitor loop #508: job 0:6920421863 is in state 'finished'
[2025-12-06 22:40:53] 2025-12-07 03:40:19,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 22:40:53] 2025-12-07 03:40:19,684 | INFO     | time since job start (6826s) is within the limit (174528.0s)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,114 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-06 22:40:53] 2025-12-07 03:40:21,117 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-12-06 22:40:53] 2025-12-07 03:40:21,119 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6920421863/memory_monitor_summary.json (trf name=prmon)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,120 | INFO     | extracted standard info from prmon json
[2025-12-06 22:40:53] 2025-12-07 03:40:21,120 | INFO     | extracted standard memory fields from prmon json
[2025-12-06 22:40:53] 2025-12-07 03:40:21,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-06 22:40:53] 2025-12-07 03:40:21,121 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-06 22:40:53] 2025-12-07 03:40:21,121 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-06 22:40:53] 2025-12-07 03:40:21,123 | INFO     | fitting pss+swap vs Time
[2025-12-06 22:40:53] 2025-12-07 03:40:21,124 | INFO     | sum of square deviations: 435610028.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,124 | INFO     | sum of deviations: -6555716604.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,124 | INFO     | mean x: 1765075409.5
[2025-12-06 22:40:53] 2025-12-07 03:40:21,125 | INFO     | mean y: 2520729.1785714286
[2025-12-06 22:40:53] 2025-12-07 03:40:21,125 | INFO     | intersect: 26566037236.129253
[2025-12-06 22:40:53] 2025-12-07 03:40:21,125 | INFO     | chi2: 2.2464318299418453
[2025-12-06 22:40:53] 2025-12-07 03:40:21,125 | INFO     | sum of square deviations: 379832238.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | sum of deviations: 1166084662.0000055
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | mean x: 1765075257.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | mean y: 2541105.2429906544
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | intersect: -5416238499.408202
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | chi2: 1.4811309048625436
[2025-12-06 22:40:53] 2025-12-07 03:40:21,126 | INFO     | current chi2=1.4811309048625436 (change=34.06740034925135 %)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,127 | INFO     | sum of square deviations: 329031285.5
[2025-12-06 22:40:53] 2025-12-07 03:40:21,127 | INFO     | sum of deviations: 1283995160.9999945
[2025-12-06 22:40:53] 2025-12-07 03:40:21,127 | INFO     | mean x: 1765075104.5
[2025-12-06 22:40:53] 2025-12-07 03:40:21,127 | INFO     | mean y: 2541459.568627451
[2025-12-06 22:40:53] 2025-12-07 03:40:21,127 | INFO     | intersect: -6885398966.933945
[2025-12-06 22:40:53] 2025-12-07 03:40:21,128 | INFO     | chi2: 1.4827098164017707
[2025-12-06 22:40:53] 2025-12-07 03:40:21,128 | INFO     | current chi2=1.4827098164017707 (change=-0.10660175505375732 %)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,128 | INFO     | right removable region: 101
[2025-12-06 22:40:53] 2025-12-07 03:40:21,128 | INFO     | sum of square deviations: 379832238.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | sum of deviations: -21883748902.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | mean x: 1765075562.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | mean y: 2561704.271028037
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | intersect: 101696063538.79549
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | chi2: 0.9059106824737424
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | current chi2=0.9059106824737424 (change=59.67335084914666 %)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,129 | INFO     | sum of square deviations: 329031285.5
[2025-12-06 22:40:53] 2025-12-07 03:40:21,130 | INFO     | sum of deviations: -19125901386.999992
[2025-12-06 22:40:53] 2025-12-07 03:40:21,130 | INFO     | mean x: 1765075714.5
[2025-12-06 22:40:53] 2025-12-07 03:40:21,130 | INFO     | mean y: 2553374.274509804
[2025-12-06 22:40:53] 2025-12-07 03:40:21,130 | INFO     | intersect: 102602717990.27895
[2025-12-06 22:40:53] 2025-12-07 03:40:21,130 | INFO     | chi2: 0.9053008729927874
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | current chi2=0.9053008729927874 (change=0.06731452589672823 %)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | left removable region: 20
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | sum of square deviations: 164765880.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | sum of deviations: -4683948928.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | mean x: 1765075684.0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,131 | INFO     | mean y: 2553243.222222222
[2025-12-06 22:40:53] 2025-12-07 03:40:21,132 | INFO     | intersect: 50179958649.67329
[2025-12-06 22:40:53] 2025-12-07 03:40:21,132 | INFO     | chi2: 0.06599607660624447
[2025-12-06 22:40:53] 2025-12-07 03:40:21,132 | INFO     | current memory leak: -28.43 B/s (using 81 data points, chi2=0.07)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,132 | INFO     | could have reported an average CPU frequency of 2080 MHz (7 samples)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,132 | INFO     | ..............................
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . Timing measurements:
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . get job = 0 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . initial setup = 1 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . payload setup = 8 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . stage-in = 0 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . payload execution = 6791 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . stage-out = 0 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | . log creation = 0 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,133 | INFO     | ..............................
[2025-12-06 22:40:53] 2025-12-07 03:40:21,618 | INFO     | 
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | job summary report
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | --------------------------------------------------
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | PanDA job id: 6920421863
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | task id: 47751390
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | errors: (none)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | pilot state: finished 
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | transexitcode: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | exeerrorcode: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | exeerrordiag: 
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | exitcode: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,620 | INFO     | exitmsg: OK
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | cpuconsumptiontime: 50869 s
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | nevents: 400
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | neventsw: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | pid: 18862
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | pgrp: 18862
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | corecount: 8
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | event service: False
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | sizes: {0: 2283739, 1: 2283938, 6: 2284200, 11: 2284228, 6803: 2311351, 6804: 2320349, 6805: 2320533, 6810: 2320727}
[2025-12-06 22:40:53] 2025-12-07 03:40:21,621 | INFO     | --------------------------------------------------
[2025-12-06 22:40:53] 2025-12-07 03:40:21,622 | INFO     | 
[2025-12-06 22:40:53] 2025-12-07 03:40:21,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-06 22:40:53] 2025-12-07 03:40:21,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,652 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,652 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,652 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,653 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,653 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,653 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,653 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,653 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 22:40:53] 2025-12-07 03:40:21,656 | INFO     | job 6920421863 has completed (purged errors)
[2025-12-06 22:40:53] 2025-12-07 03:40:21,656 | INFO     | overall cleanup function is called
[2025-12-06 22:40:53] 2025-12-07 03:40:22,665 | INFO     | --- collectZombieJob: --- 10, [18862]
[2025-12-06 22:40:53] 2025-12-07 03:40:22,665 | INFO     | zombie collector waiting for pid 18862
[2025-12-06 22:40:53] 2025-12-07 03:40:22,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 22:40:53] 2025-12-07 03:40:22,665 | INFO     | collected zombie processes
[2025-12-06 22:40:53] 2025-12-07 03:40:22,665 | INFO     | will attempt to kill all subprocesses of pid=18862
[2025-12-06 22:40:53] 2025-12-07 03:40:22,754 | INFO     | process IDs to be killed: [18862] (in reverse order)
[2025-12-06 22:40:53] 2025-12-07 03:40:22,809 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 22:40:53] 2025-12-07 03:40:22,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 22:40:53] 2025-12-07 03:40:22,815 | INFO     | did not find any defunct processes belonging to 18862
[2025-12-06 22:40:53] 2025-12-07 03:40:22,819 | INFO     | did not find any defunct processes belonging to 18862
[2025-12-06 22:40:53] 2025-12-07 03:40:22,820 | INFO     | ready for new job
[2025-12-06 22:40:53] 2025-12-07 03:40:22,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 22:40:53] 2025-12-07 03:40:22,821 | INFO     | ***************************************
[2025-12-06 22:40:53] 2025-12-07 03:40:22,822 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-06 22:40:53] 2025-12-07 03:40:22,822 | INFO     | ***************************************
[2025-12-06 22:40:53] 2025-12-07 03:40:22,822 | INFO     | 
[2025-12-06 22:40:53] 2025-12-07 03:40:22,822 | INFO     | architecture information:
[2025-12-06 22:40:53] 2025-12-07 03:40:22,823 | INFO     | executing command: cat /etc/os-release
[2025-12-06 22:40:53] 2025-12-07 03:40:22,840 | INFO     | cat /etc/os-release:
[2025-12-06 22:40:53] NAME="CentOS Linux"
[2025-12-06 22:40:53] VERSION="7 (Core)"
[2025-12-06 22:40:53] ID="centos"
[2025-12-06 22:40:53] ID_LIKE="rhel fedora"
[2025-12-06 22:40:53] VERSION_ID="7"
[2025-12-06 22:40:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 22:40:53] ANSI_COLOR="0;31"
[2025-12-06 22:40:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 22:40:53] HOME_URL="https://www.centos.org/"
[2025-12-06 22:40:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 22:40:53] 
[2025-12-06 22:40:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 22:40:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 22:40:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 22:40:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 22:40:53] 
[2025-12-06 22:40:53] 2025-12-07 03:40:22,841 | INFO     | ***************************************
[2025-12-06 22:40:53] 2025-12-07 03:40:23,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-06 22:40:53] 2025-12-07 03:40:23,364 | INFO     | sufficient remaining disk space (18638438400 B)
[2025-12-06 22:40:53] 2025-12-07 03:40:23,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 22:40:53] 2025-12-07 03:40:23,365 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 22:40:53] 2025-12-07 03:40:23,365 | INFO     | update_server=False
[2025-12-06 22:40:53] 2025-12-07 03:40:23,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 22:40:53] 2025-12-07 03:40:23,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 22:40:53] 2025-12-07 03:40:23,366 | INFO     | aborting loop
[2025-12-06 22:40:53] 2025-12-07 03:40:23,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 22:40:53] 2025-12-07 03:40:23,389 | INFO     | all job control threads have been joined
[2025-12-06 22:40:53] 2025-12-07 03:40:23,716 | INFO     | all data control threads have been joined
[2025-12-06 22:40:53] 2025-12-07 03:40:24,368 | INFO     | [job] retrieve thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,371 | INFO     | [job] job monitor thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,373 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,395 | INFO     | [job] control thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,620 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,694 | INFO     | [payload] validate_post thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,722 | INFO     | [data] control thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:24,838 | INFO     | all payload control threads have been joined
[2025-12-06 22:40:53] 2025-12-07 03:40:25,233 | INFO     | [payload] failed_post thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:25,373 | INFO     | [data] copytool_out thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:25,515 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:25,671 | INFO     | [job] validate thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:25,844 | INFO     | [payload] control thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:25,855 | INFO     | [data] copytool_in thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:26,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 22:40:53] 2025-12-07 03:40:26,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 22:40:53] 2025-12-07 03:40:27,232 | INFO     | [job] queue monitor thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:30,184 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 22:40:53] 2025-12-07 03:40:44,539 | INFO     | [monitor] cgroup control has ended
[2025-12-06 22:40:53] 2025-12-07 03:40:44,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957737219904)>', '<ExcThread(monitor, started 139956861261568)>']
[2025-12-06 22:40:53] 2025-12-07 03:40:49,778 | INFO     | all workflow threads have been joined
[2025-12-06 22:40:53] 2025-12-07 03:40:49,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 22:40:53] 2025-12-07 03:40:49,780 | INFO     | traces error code: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:49,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 22:40:53] 2025-12-07 03:40:52,894 | INFO     | PID=12497 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-06 22:40:53] 2025-12-07 03:40:52,895 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 22:40:53] 2025-12-07 03:40:52,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 22:40:53] 2025-12-07 03:40:52,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 22:40:53] 2025-12-07 03:40:52,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 22:40:53] 2025-12-07 03:40:52,895 | INFO     | [monitor] control thread has ended
[2025-12-06 22:40:53] 2025-12-07 03:40:53,003 [wrapper] ==== pilot stdout END ====
[2025-12-06 22:40:53] 2025-12-07 03:40:53,008 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 22:40:53] 2025-12-07 03:40:53,012 [wrapper] pilotpid: 12497
[2025-12-06 22:40:53] 2025-12-07 03:40:53,017 [wrapper] Pilot exit status: 0
[2025-12-06 22:40:53] 2025-12-07 03:40:53,038 [wrapper] pandaids: 6920421863 6920421863
[2025-12-06 22:40:53] 2025-12-07 03:40:53,084 [wrapper] cleanup supervisor_pilot  5125 12498
[2025-12-06 22:40:53] 2025-12-07 03:40:53,088 [wrapper] Test setup, not cleaning
[2025-12-06 22:40:53] 2025-12-07 03:40:53,093 [wrapper] apfmon messages muted
[2025-12-06 22:40:53] 2025-12-07 03:40:53,098 [wrapper] ==== wrapper stdout END ====
[2025-12-06 22:40:53] 2025-12-07 03:40:53,102 [wrapper] ==== wrapper stderr END ====
[2025-12-06 22:40:53]  *** Error codes and diagnostics ***
[2025-12-06 22:40:53]     "exeErrorCode": 0,
[2025-12-06 22:40:53]     "exeErrorDiag": "",
[2025-12-06 22:40:53]     "pilotErrorCode": 0,
[2025-12-06 22:40:53]     "pilotErrorDiag": "",
[2025-12-06 22:40:53]  *** Listing of results directory ***
[2025-12-06 22:40:53] total 568096
[2025-12-06 22:40:53] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas    579449 Dec  6 19:58 pilot3.tar.gz
[2025-12-06 22:40:53] -rwx------ 1 boincer umatlas     36292 Dec  6 20:18 runpilot2-wrapper.sh
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas      5112 Dec  6 20:19 queuedata.json
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas       100 Dec  6 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 22:40:53] -rwxr-xr-x 1 boincer umatlas      7986 Dec  6 20:19 run_atlas
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas       105 Dec  6 20:19 job.xml
[2025-12-06 22:40:53] -rw-r--r-- 3 boincer umatlas 197429062 Dec  6 20:19 EVNT.47751388._000043.pool.root.1
[2025-12-06 22:40:53] -rw-r--r-- 3 boincer umatlas 197429062 Dec  6 20:19 ATLAS.root_0
[2025-12-06 22:40:53] -rw-r--r-- 2 boincer umatlas     15847 Dec  6 20:19 start_atlas.sh
[2025-12-06 22:40:53] drwxrwx--x 2 boincer umatlas      4096 Dec  6 20:19 shared
[2025-12-06 22:40:53] -rw-r--r-- 2 boincer umatlas    592370 Dec  6 20:19 input.tar.gz
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas         0 Dec  6 20:19 boinc_lockfile
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas   1516240 Dec  6 20:20 agis_ddmendpoints.agis.ALL.json
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas      2473 Dec  6 20:46 pandaJob.out
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas        57 Dec  6 20:46 setup.sh.local
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas    981451 Dec  6 20:46 agis_schedconf.cvmfs.json
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas      5909 Dec  6 22:38 init_data.xml
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas 180319247 Dec  6 22:39 HITS.47751390._001048.pool.root.1
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas       530 Dec  6 22:39 boinc_task_state.xml
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas        96 Dec  6 22:40 pilot_heartbeat.json
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas      1047 Dec  6 22:40 memory_monitor_summary.json
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas    360204 Dec  6 22:40 log.47751390._001048.job.log.tgz.1
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas      7838 Dec  6 22:40 heartbeat.json
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas      8192 Dec  6 22:40 boinc_mmap_file
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas        27 Dec  6 22:40 wrapper_checkpoint.txt
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas       745 Dec  6 22:40 pilotlog.txt
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas    965423 Dec  6 22:40 log.47751390._001048.job.log.1
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas       357 Dec  6 22:40 output.list
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas       620 Dec  6 22:40 runtime_log
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas   1341440 Dec  6 22:40 result.tar.gz
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas      9422 Dec  6 22:40 runtime_log.err
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas       782 Dec  6 22:40 O6FKDmGbIm8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmclMKDmvfmKim.diag
[2025-12-06 22:40:53] -rw-r--r-- 1 boincer umatlas     23233 Dec  6 22:40 stderr.txt
[2025-12-06 22:40:53] HITS file was successfully produced:
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas 180319247 Dec  6 22:39 shared/HITS.pool.root.1
[2025-12-06 22:40:53]  *** Contents of shared directory: ***
[2025-12-06 22:40:53] total 370812
[2025-12-06 22:40:53] -rw-r--r-- 3 boincer umatlas 197429062 Dec  6 20:19 ATLAS.root_0
[2025-12-06 22:40:53] -rw-r--r-- 2 boincer umatlas     15847 Dec  6 20:19 start_atlas.sh
[2025-12-06 22:40:53] -rw-r--r-- 2 boincer umatlas    592370 Dec  6 20:19 input.tar.gz
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas 180319247 Dec  6 22:39 HITS.pool.root.1
[2025-12-06 22:40:53] -rw------- 1 boincer umatlas   1341440 Dec  6 22:40 result.tar.gz
22:40:54 (8355): run_atlas exited; CPU time 50835.722752
22:40:54 (8355): called boinc_finish(0)

</stderr_txt>
]]>

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