Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:03:12 (2081663): wrapper (7.7.26015): starting
17:03:12 (2081663): wrapper: running run_atlas (--nthreads 8)
[2025-12-06 17:03:12] Arguments: --nthreads 8
[2025-12-06 17:03:12] Threads: 8
[2025-12-06 17:03:12] Checking for CVMFS
[2025-12-06 17:03:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-06 17:03:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-06 17:03:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-06 17:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-06 17:03:12] 2.13.2.0 6902 50086 260192 153703 3 530 30122888 40960001 26028 16776704 0 183950036 99.601 194738483 38754 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-06 17:03:12] CVMFS is ok
[2025-12-06 17:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 17:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-06 17:03:12] Further information can be found at the LHC@home message board.
[2025-12-06 17:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 17:03:12] Checking for apptainer binary...
[2025-12-06 17:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-06 17:03:12] Running /usr/bin/apptainer --version
[2025-12-06 17:03:12] apptainer version 1.4.4-1.el9
[2025-12-06 17:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 17:03:13] c-212-6.aglt2.org
[2025-12-06 17:03:13] apptainer works
[2025-12-06 17:03:13] Set ATHENA_PROC_NUMBER=8
[2025-12-06 17:03:13] Set ATHENA_CORE_NUMBER=8
[2025-12-06 17:03:13] Starting ATLAS job with PandaID=6900286015
[2025-12-06 17:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-07 23:06:46]  *** The last 200 lines of the pilot log: ***
[2025-12-07 23:06:47] 2025-12-08 04:06:12,740 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-07 23:06:47] 2025-12-08 04:06:12,746 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2955.2372812499993
[2025-12-07 23:06:47] 2025-12-08 04:06:12,762 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6900286015/memory_monitor_summary.json (trf name=prmon)
[2025-12-07 23:06:47] 2025-12-08 04:06:12,763 | INFO     | extracted standard info from prmon json
[2025-12-07 23:06:47] 2025-12-08 04:06:12,763 | INFO     | extracted standard memory fields from prmon json
[2025-12-07 23:06:47] 2025-12-08 04:06:12,763 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-07 23:06:47] 2025-12-08 04:06:12,786 | INFO     | fitting pss+swap vs Time
[2025-12-07 23:06:47] 2025-12-08 04:06:12,788 | INFO     | sum of square deviations: 1728265883475.8887
[2025-12-07 23:06:47] 2025-12-08 04:06:12,836 | INFO     | time since job start (108164s) is within the limit (172800.0s)
[2025-12-07 23:06:47] 2025-12-08 04:06:12,849 | INFO     | sum of deviations: 8840850165222.623
[2025-12-07 23:06:47] 2025-12-08 04:06:12,850 | INFO     | mean x: 1765112687.2216582
[2025-12-07 23:06:47] 2025-12-08 04:06:12,850 | INFO     | mean y: 2980614.285956007
[2025-12-07 23:06:47] 2025-12-08 04:06:12,850 | INFO     | intersect: -9026357372.225225
[2025-12-07 23:06:47] 2025-12-08 04:06:12,852 | INFO     | chi2: 9.936825437680545
[2025-12-07 23:06:47] 2025-12-08 04:06:12,853 | INFO     | sum of square deviations: 1713686400958.4062
[2025-12-07 23:06:47] 2025-12-08 04:06:12,918 | INFO     | sum of deviations: 9514124293578.746
[2025-12-07 23:06:47] 2025-12-08 04:06:12,918 | INFO     | mean x: 1765112534.7251132
[2025-12-07 23:06:47] 2025-12-08 04:06:12,919 | INFO     | mean y: 2987657.0056561087
[2025-12-07 23:06:47] 2025-12-08 04:06:12,919 | INFO     | intersect: -9796646650.727968
[2025-12-07 23:06:47] 2025-12-08 04:06:12,920 | INFO     | chi2: 6.2246205914037676
[2025-12-07 23:06:47] 2025-12-08 04:06:12,920 | INFO     | current chi2=6.2246205914037676 (change=37.358056348660995 %)
[2025-12-07 23:06:47] 2025-12-08 04:06:12,922 | INFO     | sum of square deviations: 1699188937213.7922
[2025-12-07 23:06:47] 2025-12-08 04:06:13,000 | INFO     | sum of deviations: 9603434326298.27
[2025-12-07 23:06:47] 2025-12-08 04:06:13,000 | INFO     | mean x: 1765112382.2274532
[2025-12-07 23:06:47] 2025-12-08 04:06:13,000 | INFO     | mean y: 2988594.560408395
[2025-12-07 23:06:47] 2025-12-08 04:06:13,000 | INFO     | intersect: -9973030240.079899
[2025-12-07 23:06:47] 2025-12-08 04:06:13,002 | INFO     | chi2: 5.946805048505076
[2025-12-07 23:06:47] 2025-12-08 04:06:13,002 | INFO     | current chi2=5.946805048505076 (change=4.463172314186608 %)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,002 | INFO     | right removable region: 1762
[2025-12-07 23:06:47] 2025-12-08 04:06:13,004 | INFO     | sum of square deviations: 1713685079698.4053
[2025-12-07 23:06:47] 2025-12-08 04:06:13,088 | INFO     | sum of deviations: 8197730305844.427
[2025-12-07 23:06:47] 2025-12-08 04:06:13,089 | INFO     | mean x: 1765112839.7251132
[2025-12-07 23:06:47] 2025-12-08 04:06:13,089 | INFO     | mean y: 2987339.5893665156
[2025-12-07 23:06:47] 2025-12-08 04:06:13,089 | INFO     | intersect: -8440757191.346426
[2025-12-07 23:06:47] 2025-12-08 04:06:13,091 | INFO     | chi2: 6.847290198104403
[2025-12-07 23:06:47] 2025-12-08 04:06:13,091 | INFO     | current chi2=6.847290198104403 (change=31.09177331283885 %)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,093 | INFO     | sum of square deviations: 1699186510020.8816
[2025-12-07 23:06:47] 2025-12-08 04:06:13,166 | INFO     | sum of deviations: 7785715441813.986
[2025-12-07 23:06:47] 2025-12-08 04:06:13,166 | INFO     | mean x: 1765112992.2285876
[2025-12-07 23:06:47] 2025-12-08 04:06:13,167 | INFO     | mean y: 2991672.7941009644
[2025-12-07 23:06:47] 2025-12-08 04:06:13,167 | INFO     | intersect: -8084800573.138761
[2025-12-07 23:06:47] 2025-12-08 04:06:13,168 | INFO     | chi2: 5.766237398513688
[2025-12-07 23:06:47] 2025-12-08 04:06:13,168 | INFO     | current chi2=5.766237398513688 (change=15.78803830878955 %)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,168 | INFO     | left removable region: 20
[2025-12-07 23:06:47] 2025-12-08 04:06:13,170 | INFO     | sum of square deviations: 1639188387634.1572
[2025-12-07 23:06:47] 2025-12-08 04:06:13,247 | INFO     | sum of deviations: 8159601746352.996
[2025-12-07 23:06:47] 2025-12-08 04:06:13,248 | INFO     | mean x: 1765112961.738806
[2025-12-07 23:06:47] 2025-12-08 04:06:13,248 | INFO     | mean y: 3003753.5516647534
[2025-12-07 23:06:47] 2025-12-08 04:06:13,248 | INFO     | intersect: -8783429162.741495
[2025-12-07 23:06:47] 2025-12-08 04:06:13,250 | INFO     | chi2: 1.4933199146673266
[2025-12-07 23:06:47] 2025-12-08 04:06:13,250 | INFO     | current memory leak: 4.98 B/s (using 1742 data points, chi2=1.49)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,251 | INFO     | could have reported an average CPU frequency of 3010 MHz (63 samples)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | ..............................
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . Timing measurements:
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . get job = 0 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . initial setup = 3 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . payload setup = 8 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . stage-in = 0 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . payload execution = 108120 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . stage-out = 3 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | . log creation = 0 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,252 | INFO     | ..............................
[2025-12-07 23:06:47] 2025-12-08 04:06:13,342 | INFO     | 
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | job summary report
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | --------------------------------------------------
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | PanDA job id: 6900286015
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | task id: 47556185
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | errors: (none)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | pilot state: finished 
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | transexitcode: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | exeerrorcode: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | exeerrordiag: 
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | exitcode: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | exitmsg: OK
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | cpuconsumptiontime: 223614 s
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | nevents: 1000
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | neventsw: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | pid: 2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | pgrp: 2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | corecount: 8
[2025-12-07 23:06:47] 2025-12-08 04:06:13,344 | INFO     | event service: False
[2025-12-07 23:06:47] 2025-12-08 04:06:13,345 | INFO     | sizes: {0: 2283488, 1: 2284344, 7: 2284606, 12: 2284634, 108132: 2360029, 108137: 2369051, 108139: 2369235, 108147: 2369481}
[2025-12-07 23:06:47] 2025-12-08 04:06:13,345 | INFO     | --------------------------------------------------
[2025-12-07 23:06:47] 2025-12-08 04:06:13,345 | INFO     | 
[2025-12-07 23:06:47] 2025-12-08 04:06:13,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-07 23:06:47] 2025-12-08 04:06:13,371 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | job 6900286015 has completed (purged errors)
[2025-12-07 23:06:47] 2025-12-08 04:06:13,373 | INFO     | overall cleanup function is called
[2025-12-07 23:06:47] 2025-12-08 04:06:14,391 | INFO     | --- collectZombieJob: --- 10, [2092156]
[2025-12-07 23:06:47] 2025-12-08 04:06:14,391 | INFO     | zombie collector waiting for pid 2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:14,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-07 23:06:47] 2025-12-08 04:06:14,392 | INFO     | collected zombie processes
[2025-12-07 23:06:47] 2025-12-08 04:06:14,392 | INFO     | will attempt to kill all subprocesses of pid=2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:14,822 | INFO     | process IDs to be killed: [2092156] (in reverse order)
[2025-12-07 23:06:47] 2025-12-08 04:06:14,961 | WARNING  | found no corresponding commands to process id(s)
[2025-12-07 23:06:47] 2025-12-08 04:06:14,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-07 23:06:47] 2025-12-08 04:06:14,981 | INFO     | did not find any defunct processes belonging to 2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:14,997 | INFO     | did not find any defunct processes belonging to 2092156
[2025-12-07 23:06:47] 2025-12-08 04:06:14,998 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-07 23:06:47] 2025-12-08 04:06:14,998 | INFO     | ready for new job
[2025-12-07 23:06:47] 2025-12-08 04:06:14,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-07 23:06:47] 2025-12-08 04:06:15,013 | INFO     | ***************************************
[2025-12-07 23:06:47] 2025-12-08 04:06:15,013 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-07 23:06:47] 2025-12-08 04:06:15,013 | INFO     | ***************************************
[2025-12-07 23:06:47] 2025-12-08 04:06:15,013 | INFO     | 
[2025-12-07 23:06:47] 2025-12-08 04:06:15,028 | INFO     | architecture information:
[2025-12-07 23:06:47] 2025-12-08 04:06:15,034 | INFO     | executing command: cat /etc/os-release
[2025-12-07 23:06:47] 2025-12-08 04:06:15,060 | INFO     | cat /etc/os-release:
[2025-12-07 23:06:47] NAME="CentOS Linux"
[2025-12-07 23:06:47] VERSION="7 (Core)"
[2025-12-07 23:06:47] ID="centos"
[2025-12-07 23:06:47] ID_LIKE="rhel fedora"
[2025-12-07 23:06:47] VERSION_ID="7"
[2025-12-07 23:06:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-07 23:06:47] ANSI_COLOR="0;31"
[2025-12-07 23:06:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-07 23:06:47] HOME_URL="https://www.centos.org/"
[2025-12-07 23:06:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-07 23:06:47] 
[2025-12-07 23:06:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-07 23:06:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-07 23:06:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-07 23:06:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-07 23:06:47] 
[2025-12-07 23:06:47] 2025-12-08 04:06:15,061 | INFO     | ***************************************
[2025-12-07 23:06:47] 2025-12-08 04:06:15,564 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-07 23:06:47] 2025-12-08 04:06:15,587 | INFO     | sufficient remaining disk space (125617307648 B)
[2025-12-07 23:06:47] 2025-12-08 04:06:15,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-07 23:06:47] 2025-12-08 04:06:15,588 | INFO     | current server update state: UPDATING_FINAL
[2025-12-07 23:06:47] 2025-12-08 04:06:15,588 | INFO     | update_server=False
[2025-12-07 23:06:47] 2025-12-08 04:06:15,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-07 23:06:47] 2025-12-08 04:06:15,674 | INFO     | all job control threads have been joined
[2025-12-07 23:06:47] 2025-12-08 04:06:15,848 | INFO     | all payload control threads have been joined
[2025-12-07 23:06:47] 2025-12-08 04:06:15,863 | INFO     | all data control threads have been joined
[2025-12-07 23:06:47] 2025-12-08 04:06:15,897 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-07 23:06:47] 2025-12-08 04:06:15,897 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-07 23:06:47] 2025-12-08 04:06:15,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-07 23:06:47] 2025-12-08 04:06:15,898 | INFO     | will abort loop
[2025-12-07 23:06:47] 2025-12-08 04:06:16,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-07 23:06:47] 2025-12-08 04:06:16,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-07 23:06:47] 2025-12-08 04:06:16,595 | INFO     | [job] retrieve thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:16,669 | INFO     | [payload] failed_post thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:16,679 | INFO     | [job] control thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:16,853 | INFO     | [payload] control thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:16,868 | INFO     | [data] control thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:16,902 | INFO     | [job] job monitor thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,258 | INFO     | [payload] validate_post thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,379 | INFO     | [payload] validate_pre thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,407 | INFO     | [payload] execute_payloads thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,809 | INFO     | [job] create_data_payload thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:17,946 | INFO     | [job] validate thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:18,003 | INFO     | [data] copytool_in thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:18,057 | INFO     | [data] copytool_out thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:18,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-07 23:06:47] 2025-12-08 04:06:19,364 | INFO     | [job] queue monitor thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:20,079 | INFO     | [data] queue_monitor thread has finished
[2025-12-07 23:06:47] 2025-12-08 04:06:34,908 | INFO     | [monitor] cgroup control has ended
[2025-12-07 23:06:47] 2025-12-08 04:06:35,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757850154816)>', '<ExcThread(monitor, started 139757229176576)>']
[2025-12-07 23:06:47] 2025-12-08 04:06:40,799 | INFO     | all workflow threads have been joined
[2025-12-07 23:06:47] 2025-12-08 04:06:40,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-07 23:06:47] 2025-12-08 04:06:40,800 | INFO     | traces error code: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:40,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-07 23:06:47] 2025-12-08 04:06:46,442 | INFO     | PID=2085366 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-07 23:06:47] 2025-12-08 04:06:46,447 | INFO     | .. there are 22 such processes running
[2025-12-07 23:06:47] 2025-12-08 04:06:46,449 | INFO     | found 0 job(s) in 20 queues
[2025-12-07 23:06:47] 2025-12-08 04:06:46,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-07 23:06:47] 2025-12-08 04:06:46,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-07 23:06:47] 2025-12-08 04:06:46,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-07 23:06:47] 2025-12-08 04:06:46,449 | INFO     | [monitor] control thread has ended
[2025-12-07 23:06:47] 2025-12-08 04:06:46,707 [wrapper] ==== pilot stdout END ====
[2025-12-07 23:06:47] 2025-12-08 04:06:46,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-07 23:06:47] 2025-12-08 04:06:46,712 [wrapper] pilotpid: 2085366
[2025-12-07 23:06:47] 2025-12-08 04:06:46,714 [wrapper] Pilot exit status: 0
[2025-12-07 23:06:47] 2025-12-08 04:06:46,726 [wrapper] pandaids: 6900286015
[2025-12-07 23:06:47] 2025-12-08 04:06:46,831 [wrapper] cleanup supervisor_pilot 2213285 2085367
[2025-12-07 23:06:47] 2025-12-08 04:06:46,835 [wrapper] Test setup, not cleaning
[2025-12-07 23:06:47] 2025-12-08 04:06:46,839 [wrapper] apfmon messages muted
[2025-12-07 23:06:47] 2025-12-08 04:06:46,844 [wrapper] ==== wrapper stdout END ====
[2025-12-07 23:06:47] 2025-12-08 04:06:46,848 [wrapper] ==== wrapper stderr END ====
[2025-12-07 23:06:47]  *** Error codes and diagnostics ***
[2025-12-07 23:06:47]     "exeErrorCode": 0,
[2025-12-07 23:06:47]     "exeErrorDiag": "",
[2025-12-07 23:06:47]     "pilotErrorCode": 0,
[2025-12-07 23:06:47]     "pilotErrorDiag": "",
[2025-12-07 23:06:47]  *** Listing of results directory ***
[2025-12-07 23:06:47] total 1350756
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 11:16 pilot3.tar.gz
[2025-12-07 23:06:47] -rwx------. 1 boincer umatlas     36292 Nov 27 11:17 runpilot2-wrapper.sh
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 11:18 queuedata.json
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas       100 Dec  6 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-07 23:06:47] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  6 17:03 run_atlas
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas       105 Dec  6 17:03 job.xml
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas 410911282 Dec  6 17:03 EVNT.47483658._004413.pool.root.1
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas     15847 Dec  6 17:03 start_atlas.sh
[2025-12-07 23:06:47] drwxrwx--x. 2 boincer umatlas      4096 Dec  6 17:03 shared
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas    590106 Dec  6 17:03 input.tar.gz
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas         0 Dec  6 17:03 boinc_lockfile
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas      2787 Dec  6 17:03 pandaJob.out
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas        57 Dec  6 17:03 setup.sh.local
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas    981451 Dec  6 17:03 agis_schedconf.cvmfs.json
[2025-12-07 23:06:47] drwx------. 5 boincer umatlas      4096 Dec  6 17:03 pilot3
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas       534 Dec  7 22:58 boinc_task_state.xml
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas      6949 Dec  7 23:04 init_data.xml
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas 934547111 Dec  7 23:05 HITS.47556185._001764.pool.root.1
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas      1075 Dec  7 23:05 memory_monitor_summary.json
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas   1516240 Dec  7 23:06 agis_ddmendpoints.agis.ALL.json
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas   2752143 Dec  7 23:06 log.47556185._001764.job.log.tgz.1
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas      8631 Dec  7 23:06 heartbeat.json
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas      8192 Dec  7 23:06 boinc_mmap_file
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas        30 Dec  7 23:06 wrapper_checkpoint.txt
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas        95 Dec  7 23:06 pilot_heartbeat.json
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas       823 Dec  7 23:06 pilotlog.txt
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas  14152857 Dec  7 23:06 log.47556185._001764.job.log.1
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas       353 Dec  7 23:06 output.list
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas       620 Dec  7 23:06 runtime_log
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas  16926720 Dec  7 23:06 result.tar.gz
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas      9339 Dec  7 23:06 runtime_log.err
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas       668 Dec  7 23:06 n99MDmlrti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPmKKDmF4eWtn.diag
[2025-12-07 23:06:47] -rw-r--r--. 1 boincer umatlas     21318 Dec  7 23:06 stderr.txt
[2025-12-07 23:06:47] HITS file was successfully produced:
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas 934547111 Dec  7 23:05 shared/HITS.pool.root.1
[2025-12-07 23:06:47]  *** Contents of shared directory: ***
[2025-12-07 23:06:47] total 1331060
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas 410911282 Dec  6 17:03 ATLAS.root_0
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas     15847 Dec  6 17:03 start_atlas.sh
[2025-12-07 23:06:47] -rw-r--r--. 2 boincer umatlas    590106 Dec  6 17:03 input.tar.gz
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas 934547111 Dec  7 23:05 HITS.pool.root.1
[2025-12-07 23:06:47] -rw-------. 1 boincer umatlas  16926720 Dec  7 23:06 result.tar.gz
23:06:48 (2081663): run_atlas exited; CPU time 224725.672911
23:06:48 (2081663): called boinc_finish(0)

</stderr_txt>
]]>

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