Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:47 (2378243): wrapper (7.7.26015): starting
00:04:47 (2378243): wrapper: running run_atlas (--nthreads 9)
[2025-12-06 00:04:47] Arguments: --nthreads 9
[2025-12-06 00:04:47] Threads: 9
[2025-12-06 00:04:47] Checking for CVMFS
[2025-12-06 00:04:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-06 00:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-06 00:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-06 00:04:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-06 00:04:50] 2.13.3.0 9890 43872 336012 153677 2 365 30815550 32935937 21038 16776704 0 237871376 99.745 151524326 33534 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-06 00:04:50] CVMFS is ok
[2025-12-06 00:04:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 00:04:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-06 00:04:50] Further information can be found at the LHC@home message board.
[2025-12-06 00:04:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 00:04:50] Checking for apptainer binary...
[2025-12-06 00:04:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-06 00:04:50] Running /usr/bin/apptainer --version
[2025-12-06 00:04:50] apptainer version 1.4.4-1.el9
[2025-12-06 00:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 00:04:51] c-8-36.aglt2.org
[2025-12-06 00:04:51] apptainer works
[2025-12-06 00:04:51] Set ATHENA_PROC_NUMBER=9
[2025-12-06 00:04:51] Set ATHENA_CORE_NUMBER=9
[2025-12-06 00:04:51] Starting ATLAS job with PandaID=6908987639
[2025-12-06 00:04:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-07 00:00:35]  *** The last 200 lines of the pilot log: ***
[2025-12-07 00:00:35] 2025-12-06 20:20:55,492 | INFO     | sum of deviations: 798353774984.9337
[2025-12-07 00:00:35] 2025-12-06 20:20:55,493 | INFO     | mean x: 1765025088.494972
[2025-12-07 00:00:35] 2025-12-06 20:20:55,493 | INFO     | mean y: 2596878.7631284916
[2025-12-07 00:00:35] 2025-12-06 20:20:55,493 | INFO     | intersect: -6336193001.153789
[2025-12-07 00:00:35] 2025-12-06 20:20:55,557 | INFO     | monitor loop #2556: job 0:6908987639 is in state 'finished'
[2025-12-07 00:00:35] 2025-12-06 20:20:55,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 00:00:35] 2025-12-06 20:20:55,645 | INFO     | chi2: 8.4009836518564
[2025-12-07 00:00:35] 2025-12-06 20:20:55,647 | INFO     | sum of square deviations: 218595537932.99875
[2025-12-07 00:00:35] 2025-12-06 20:20:55,706 | INFO     | sum of deviations: 913327245895.1976
[2025-12-07 00:00:35] 2025-12-06 20:20:55,706 | INFO     | mean x: 1765024936.0011237
[2025-12-07 00:00:35] 2025-12-06 20:20:55,706 | INFO     | mean y: 2601594.802247191
[2025-12-07 00:00:35] 2025-12-06 20:20:55,706 | INFO     | intersect: -7371955905.215701
[2025-12-07 00:00:35] 2025-12-06 20:20:55,708 | INFO     | chi2: 7.027820003238301
[2025-12-07 00:00:35] 2025-12-06 20:20:55,708 | INFO     | current chi2=7.027820003238301 (change=16.3452722386225 %)
[2025-12-07 00:00:35] 2025-12-06 20:20:55,708 | INFO     | right removable region: 889
[2025-12-07 00:00:35] 2025-12-06 20:20:55,721 | INFO     | sum of square deviations: 218594884925.99567
[2025-12-07 00:00:35] 2025-12-06 20:20:55,791 | INFO     | sum of deviations: 508930289069.73755
[2025-12-07 00:00:35] 2025-12-06 20:20:55,792 | INFO     | mean x: 1765025241.002247
[2025-12-07 00:00:35] 2025-12-06 20:20:55,792 | INFO     | mean y: 2608786.131460674
[2025-12-07 00:00:35] 2025-12-06 20:20:55,792 | INFO     | intersect: -4106704231.06363
[2025-12-07 00:00:35] 2025-12-06 20:20:55,805 | INFO     | chi2: 4.901196533013577
[2025-12-07 00:00:35] 2025-12-06 20:20:55,805 | INFO     | current chi2=4.901196533013577 (change=41.65925400973088 %)
[2025-12-07 00:00:35] 2025-12-06 20:20:55,807 | INFO     | sum of square deviations: 214931154317.22702
[2025-12-07 00:00:35] 2025-12-06 20:20:55,890 | INFO     | sum of deviations: 278063933544.4204
[2025-12-07 00:00:35] 2025-12-06 20:20:55,890 | INFO     | mean x: 1765025393.5050848
[2025-12-07 00:00:35] 2025-12-06 20:20:55,890 | INFO     | mean y: 2618392.795480226
[2025-12-07 00:00:35] 2025-12-06 20:20:55,890 | INFO     | intersect: -2280856542.6223626
[2025-12-07 00:00:35] 2025-12-06 20:20:55,892 | INFO     | chi2: 2.7464498317048407
[2025-12-07 00:00:35] 2025-12-06 20:20:55,911 | INFO     | current chi2=2.7464498317048407 (change=43.96368696490236 %)
[2025-12-07 00:00:35] 2025-12-06 20:20:55,912 | INFO     | sum of square deviations: 211308586780.9449
[2025-12-07 00:00:35] 2025-12-06 20:20:56,002 | INFO     | sum of deviations: 149133056087.92303
[2025-12-07 00:00:35] 2025-12-06 20:20:56,002 | INFO     | mean x: 1765025546.0079546
[2025-12-07 00:00:35] 2025-12-06 20:20:56,002 | INFO     | mean y: 2623815.868181818
[2025-12-07 00:00:35] 2025-12-06 20:20:56,003 | INFO     | intersect: -1243059844.0310473
[2025-12-07 00:00:35] 2025-12-06 20:20:56,004 | INFO     | chi2: 2.049175026434862
[2025-12-07 00:00:35] 2025-12-06 20:20:56,004 | INFO     | current chi2=2.049175026434862 (change=25.388222905828577 %)
[2025-12-07 00:00:35] 2025-12-06 20:20:56,021 | INFO     | sum of square deviations: 207726897296.6238
[2025-12-07 00:00:35] 2025-12-06 20:20:56,117 | INFO     | sum of deviations: 67973423173.09608
[2025-12-07 00:00:35] 2025-12-06 20:20:56,117 | INFO     | mean x: 1765025698.512
[2025-12-07 00:00:35] 2025-12-06 20:20:56,118 | INFO     | mean y: 2627271.5622857143
[2025-12-07 00:00:35] 2025-12-06 20:20:56,118 | INFO     | intersect: -574933170.9115049
[2025-12-07 00:00:35] 2025-12-06 20:20:56,132 | INFO     | chi2: 1.7938805926713641
[2025-12-07 00:00:35] 2025-12-06 20:20:56,132 | INFO     | current chi2=1.7938805926713641 (change=12.458400598784229 %)
[2025-12-07 00:00:35] 2025-12-06 20:20:56,132 | INFO     | left removable region: 40
[2025-12-07 00:00:35] 2025-12-06 20:20:56,134 | INFO     | sum of square deviations: 189753522137.22485
[2025-12-07 00:00:35] 2025-12-06 20:20:56,212 | INFO     | sum of deviations: 44767111874.92581
[2025-12-07 00:00:35] 2025-12-06 20:20:56,212 | INFO     | mean x: 1765026125.5347466
[2025-12-07 00:00:35] 2025-12-06 20:20:56,212 | INFO     | mean y: 2638399.5618374557
[2025-12-07 00:00:35] 2025-12-06 20:20:56,212 | INFO     | intersect: -413770851.41817415
[2025-12-07 00:00:35] 2025-12-06 20:20:56,214 | INFO     | chi2: 0.15025760608873262
[2025-12-07 00:00:35] 2025-12-06 20:20:56,233 | INFO     | current memory leak: 0.24 B/s (using 849 data points, chi2=0.15)
[2025-12-07 00:00:35] 2025-12-06 20:20:56,234 | INFO     | could have reported an average CPU frequency of 2600 MHz (33 samples)
[2025-12-07 00:00:35] 2025-12-06 20:20:56,234 | INFO     | ..............................
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . Timing measurements:
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . get job = 1 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . initial setup = 4 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . payload setup = 66 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . stage-in = 0 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . payload execution = 54614 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . stage-out = 9 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | . log creation = 1 s
[2025-12-07 00:00:35] 2025-12-06 20:20:56,235 | INFO     | ..............................
[2025-12-07 00:00:35] 2025-12-06 20:20:57,390 | INFO     | 
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | job summary report
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | --------------------------------------------------
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | PanDA job id: 6908987639
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | task id: 46965017
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | errors: (none)
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | pilot state: finished 
[2025-12-07 00:00:35] 2025-12-06 20:20:57,391 | INFO     | transexitcode: 0
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | exeerrorcode: 0
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | exeerrordiag: 
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | exitcode: 0
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | exitmsg: OK
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | cpuconsumptiontime: 42238 s
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | nevents: 400
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | neventsw: 0
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | pid: 2410297
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | pgrp: 2410297
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | corecount: 9
[2025-12-07 00:00:35] 2025-12-06 20:20:57,392 | INFO     | event service: False
[2025-12-07 00:00:35] 2025-12-06 20:20:57,393 | INFO     | sizes: {0: 2283753, 1: 2283809, 2: 2283837, 3: 2284036, 4: 2284064, 5: 2284092, 16: 2284276, 28: 2284304, 39: 2284332, 51: 2284360, 57: 2284650, 62: 2284958, 54685
[2025-12-07 00:00:35] 2025-12-06 20:20:57,393 | INFO     | --------------------------------------------------
[2025-12-07 00:00:35] 2025-12-06 20:20:57,393 | INFO     | 
[2025-12-07 00:00:35] 2025-12-06 20:20:57,393 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-07 00:00:35] 2025-12-06 20:20:57,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-07 00:00:35] 2025-12-06 20:20:57,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-07 00:00:35] 2025-12-06 20:20:57,557 | INFO     | job 6908987639 has completed (purged errors)
[2025-12-07 00:00:35] 2025-12-06 20:20:57,557 | INFO     | overall cleanup function is called
[2025-12-07 00:00:35] 2025-12-06 20:20:58,577 | INFO     | --- collectZombieJob: --- 10, [2410297]
[2025-12-07 00:00:35] 2025-12-06 20:20:58,577 | INFO     | zombie collector waiting for pid 2410297
[2025-12-07 00:00:35] 2025-12-06 20:20:58,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-07 00:00:35] 2025-12-06 20:20:58,577 | INFO     | collected zombie processes
[2025-12-07 00:00:35] 2025-12-06 20:20:58,578 | INFO     | will attempt to kill all subprocesses of pid=2410297
[2025-12-07 00:00:35] 2025-12-06 20:20:59,155 | INFO     | PID=2389938 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-07 00:00:35] 2025-12-06 20:20:59,162 | INFO     | .. there are 42 such processes running
[2025-12-07 00:00:35] 2025-12-06 20:21:00,808 | INFO     | process IDs to be killed: [2410297] (in reverse order)
[2025-12-07 00:00:35] 2025-12-06 20:21:01,149 | WARNING  | found no corresponding commands to process id(s)
[2025-12-07 00:00:35] 2025-12-06 20:21:01,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-07 00:00:35] 2025-12-06 20:21:01,203 | INFO     | did not find any defunct processes belonging to 2410297
[2025-12-07 00:00:35] 2025-12-06 20:21:01,239 | INFO     | did not find any defunct processes belonging to 2410297
[2025-12-07 00:00:35] 2025-12-06 20:21:01,246 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-07 00:00:35] 2025-12-06 20:21:01,247 | INFO     | ready for new job
[2025-12-07 00:00:35] 2025-12-06 20:21:01,247 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-07 00:00:35] 2025-12-06 20:21:01,255 | INFO     | ***************************************
[2025-12-07 00:00:35] 2025-12-06 20:21:01,255 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-07 00:00:35] 2025-12-06 20:21:01,255 | INFO     | ***************************************
[2025-12-07 00:00:35] 2025-12-06 20:21:01,255 | INFO     | 
[2025-12-07 00:00:35] 2025-12-06 20:21:01,257 | INFO     | architecture information:
[2025-12-07 00:00:35] 2025-12-06 20:21:01,265 | INFO     | executing command: cat /etc/os-release
[2025-12-07 00:00:35] 2025-12-06 20:21:01,374 | INFO     | cat /etc/os-release:
[2025-12-07 00:00:35] NAME="CentOS Linux"
[2025-12-07 00:00:35] VERSION="7 (Core)"
[2025-12-07 00:00:35] ID="centos"
[2025-12-07 00:00:35] ID_LIKE="rhel fedora"
[2025-12-07 00:00:35] VERSION_ID="7"
[2025-12-07 00:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-07 00:00:35] ANSI_COLOR="0;31"
[2025-12-07 00:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-07 00:00:35] HOME_URL="https://www.centos.org/"
[2025-12-07 00:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-07 00:00:35] 
[2025-12-07 00:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-07 00:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-07 00:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-07 00:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-07 00:00:35] 
[2025-12-07 00:00:35] 2025-12-06 20:21:01,375 | INFO     | ***************************************
[2025-12-07 00:00:35] 2025-12-06 20:21:01,878 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-07 00:00:35] 2025-12-06 20:21:02,038 | INFO     | sufficient remaining disk space (75064410112 B)
[2025-12-07 00:00:35] 2025-12-06 20:21:02,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-07 00:00:35] 2025-12-06 20:21:02,039 | INFO     | current server update state: UPDATING_FINAL
[2025-12-07 00:00:35] 2025-12-06 20:21:02,039 | INFO     | update_server=False
[2025-12-07 00:00:35] 2025-12-06 20:21:02,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-07 00:00:35] 2025-12-06 20:21:02,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-07 00:00:35] 2025-12-06 20:21:02,048 | INFO     | aborting loop
[2025-12-07 00:00:35] 2025-12-06 20:21:02,062 | INFO     | all job control threads have been joined
[2025-12-07 00:00:35] 2025-12-06 20:21:02,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-07 00:00:35] 2025-12-06 20:21:02,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-07 00:00:35] 2025-12-06 20:21:02,250 | INFO     | all data control threads have been joined
[2025-12-07 00:00:35] 2025-12-06 20:21:02,572 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-07 00:00:35] 2025-12-06 20:21:03,045 | INFO     | [job] retrieve thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,055 | INFO     | [job] job monitor thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,068 | INFO     | [job] control thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,188 | INFO     | [job] queue monitor thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,256 | INFO     | [data] control thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,440 | INFO     | all payload control threads have been joined
[2025-12-07 00:00:35] 2025-12-06 20:21:03,558 | INFO     | [payload] validate_post thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,943 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,954 | INFO     | [payload] validate_pre thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,969 | INFO     | [job] create_data_payload thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:03,993 | INFO     | [job] validate thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:04,086 | INFO     | [payload] failed_post thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:04,107 | INFO     | [data] copytool_out thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:04,236 | INFO     | [data] copytool_in thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:04,337 | INFO     | [payload] execute_payloads thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:04,446 | INFO     | [payload] control thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:06,587 | INFO     | [data] queue_monitor thread has finished
[2025-12-07 00:00:35] 2025-12-06 20:21:32,697 | INFO     | [monitor] cgroup control has ended
[2025-12-07 00:00:35] 2025-12-06 20:21:34,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642636257088)>', '<ExcThread(monitor, started 139642363942656)>']
[2025-12-07 00:00:35] 2025-12-06 20:21:34,821 | INFO     | PID=2389938 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-07 00:00:35] 2025-12-06 20:21:34,821 | INFO     | .. there are 42 such processes running
[2025-12-07 00:00:35] 2025-12-06 20:21:34,845 | INFO     | found 0 job(s) in 20 queues
[2025-12-07 00:00:35] 2025-12-06 20:21:34,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-07 00:00:35] 2025-12-06 20:21:34,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-07 00:00:35] 2025-12-06 20:21:34,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-07 00:00:35] 2025-12-06 20:21:34,845 | INFO     | [monitor] control thread has ended
[2025-12-07 00:00:35] 2025-12-06 20:21:39,791 | INFO     | all workflow threads have been joined
[2025-12-07 00:00:35] 2025-12-06 20:21:39,791 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-07 00:00:35] 2025-12-06 20:21:39,792 | INFO     | traces error code: 0
[2025-12-07 00:00:35] 2025-12-06 20:21:39,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-07 00:00:35] 2025-12-06 20:21:41,639 [wrapper] ==== pilot stdout END ====
[2025-12-07 00:00:35] 2025-12-06 20:21:41,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-07 00:00:35] 2025-12-06 20:21:41,716 [wrapper] pilotpid: 2389938
[2025-12-07 00:00:35] 2025-12-06 20:21:41,738 [wrapper] Pilot exit status: 0
[2025-12-07 00:00:35] 2025-12-06 20:21:41,944 [wrapper] pandaids: 6908987639
[2025-12-07 00:00:35] 2025-12-06 20:21:42,118 [wrapper] cleanup supervisor_pilot 1679966 2389939
[2025-12-07 00:00:35] 2025-12-06 20:21:42,165 [wrapper] Test setup, not cleaning
[2025-12-07 00:00:35] 2025-12-06 20:21:42,183 [wrapper] apfmon messages muted
[2025-12-07 00:00:35] 2025-12-06 20:21:42,237 [wrapper] ==== wrapper stdout END ====
[2025-12-07 00:00:35] 2025-12-06 20:21:42,248 [wrapper] ==== wrapper stderr END ====
[2025-12-07 00:00:35]  *** Error codes and diagnostics ***
[2025-12-07 00:00:35]     "exeErrorCode": 0,
[2025-12-07 00:00:35]     "exeErrorDiag": "",
[2025-12-07 00:00:35]     "pilotErrorCode": 0,
[2025-12-07 00:00:35]     "pilotErrorDiag": "",
[2025-12-07 00:00:35]  *** Listing of results directory ***
[2025-12-07 00:00:35] total 468388
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 30 06:05 pilot3.tar.gz
[2025-12-07 00:00:35] -rwx------. 1 boincer umatlas     36292 Nov 30 06:08 runpilot2-wrapper.sh
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 30 06:09 queuedata.json
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas       100 Dec  6 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-07 00:00:35] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  6 00:04 run_atlas
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas       105 Dec  6 00:04 job.xml
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas 276997096 Dec  6 00:04 EVNT.46965009._000069.pool.root.1
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  6 00:04 start_atlas.sh
[2025-12-07 00:00:35] drwxrwx--x. 2 boincer umatlas      4096 Dec  6 00:04 shared
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas    589973 Dec  6 00:04 input.tar.gz
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas         0 Dec  6 00:04 boinc_lockfile
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas      2652 Dec  6 00:04 pandaJob.out
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas        57 Dec  6 00:04 setup.sh.local
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas    985860 Dec  6 00:06 agis_schedconf.cvmfs.json
[2025-12-07 00:00:35] drwx------. 5 boincer umatlas      4096 Dec  6 00:06 pilot3
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas 185165108 Dec  6 15:17 HITS.46965017._001782.pool.root.1
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas       531 Dec  6 15:17 boinc_task_state.xml
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas      1042 Dec  6 15:19 memory_monitor_summary.json
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas   1516240 Dec  6 15:19 agis_ddmendpoints.agis.ALL.json
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas    918267 Dec  6 15:20 log.46965017._001782.job.log.tgz.1
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas      7817 Dec  6 15:20 heartbeat.json
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas        95 Dec  6 15:21 pilot_heartbeat.json
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas      4824 Dec  6 15:21 pilotlog.txt
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas   5857729 Dec  6 15:21 log.46965017._001782.job.log.1
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas       357 Dec  6 15:21 output.list
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas       620 Dec  6 15:21 runtime_log
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas   6799360 Dec  6 15:21 result.tar.gz
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas      9333 Dec  6 15:21 runtime_log.err
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas       655 Dec  6 15:21 4hGLDmTTuj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcOMKDmIfc7bm.diag
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas      6662 Dec  7 00:00 init_data.xml
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas      8192 Dec  7 00:00 boinc_mmap_file
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas        28 Dec  7 00:00 wrapper_checkpoint.txt
[2025-12-07 00:00:35] -rw-r--r--. 1 boincer umatlas     21348 Dec  7 00:00 stderr.txt
[2025-12-07 00:00:35] HITS file was successfully produced:
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas 185165108 Dec  6 15:17 shared/HITS.pool.root.1
[2025-12-07 00:00:35]  *** Contents of shared directory: ***
[2025-12-07 00:00:35] total 458576
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas 276997096 Dec  6 00:04 ATLAS.root_0
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas     15847 Dec  6 00:04 start_atlas.sh
[2025-12-07 00:00:35] -rw-r--r--. 2 boincer umatlas    589973 Dec  6 00:04 input.tar.gz
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas 185165108 Dec  6 15:17 HITS.pool.root.1
[2025-12-07 00:00:35] -rw-------. 1 boincer umatlas   6799360 Dec  6 15:21 result.tar.gz
00:00:37 (2378243): run_atlas exited; CPU time 44686.087714
00:00:37 (2378243): called boinc_finish(0)

</stderr_txt>
]]>

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