Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-05 13:34:58 (32222): vboxwrapper version 26210
2025-12-05 13:34:58 (32222): BOINC client version: 8.3.0
2025-12-05 13:34:59 (32222): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-12-05 13:34:59 (32222): Successfully copied 'init_data.xml' to the shared directory.
2025-12-05 13:34:59 (32222): Create VM. (boinc_1e0eb02963e54084, slot#14)
2025-12-05 13:34:59 (32222): Setting Memory Size for VM. (4300MB)
2025-12-05 13:34:59 (32222): Setting CPU Count for VM. (3)
2025-12-05 13:34:59 (32222): Setting Chipset Options for VM.
2025-12-05 13:34:59 (32222): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-05 13:34:59 (32222): Setting Boot Options for VM.
2025-12-05 13:35:00 (32222): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-05 13:35:00 (32222): Enabling VM Network Access.
2025-12-05 13:35:00 (32222): Disabling USB Support for VM.
2025-12-05 13:35:00 (32222): Disabling COM Port Support for VM.
2025-12-05 13:35:00 (32222): Disabling LPT Port Support for VM.
2025-12-05 13:35:00 (32222): Disabling Audio Support for VM.
2025-12-05 13:35:00 (32222): Disabling Clipboard Support for VM.
2025-12-05 13:35:00 (32222): Disabling Drag and Drop Support for VM.
2025-12-05 13:35:00 (32222): Adding storage controller(s) to VM.
2025-12-05 13:35:01 (32222): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-05 13:35:01 (32222): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-05 13:35:01 (32222): forwarding host port 52537 to guest port 80
2025-12-05 13:35:02 (32222): Enabling remote desktop for VM.
2025-12-05 13:35:02 (32222): Enabling shared directory for VM.
2025-12-05 13:35:02 (32222): Starting VM using VBoxManage interface. (boinc_1e0eb02963e54084, slot#14)
2025-12-05 13:35:03 (32222): Successfully started VM. (PID = '32726')
2025-12-05 13:35:03 (32222): Reporting VM Process ID to BOINC.
2025-12-05 13:35:03 (32222): Guest Log: BIOS: VirtualBox 7.2.4
2025-12-05 13:35:03 (32222): Guest Log: CPUID EDX: 0x178bfbff
2025-12-05 13:35:03 (32222): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-05 13:35:03 (32222): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-05 13:35:03 (32222): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-05 13:35:03 (32222): Detected: Web Application Enabled (http://localhost:52537)
2025-12-05 13:35:03 (32222): Detected: Remote Desktop Enabled (localhost:51395)
2025-12-05 13:35:03 (32222): Preference change detected
2025-12-05 13:35:03 (32222): Setting CPU throttle for VM. (100%)
2025-12-05 13:35:03 (32222): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-05 13:35:05 (32222): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-05 13:35:05 (32222): Guest Log: BIOS: Booting from Hard Disk...
2025-12-05 13:35:08 (32222): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-05 13:35:08 (32222): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-05 13:35:08 (32222): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-05 13:35:17 (32222): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-05 13:35:17 (32222): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-05 13:35:40 (32222): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000165 main     Log opened 2025-12-05T18:35:38.166343000Z
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000264 main     OS Product: Linux
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000294 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000317 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000339 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000339 main     Process ID: 1280
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.000340 main     Package type: LINUX_64BITS_GENERIC
2025-12-05 13:35:40 (32222): Guest Log: 00:00:00.004110 main     5.2.32 r132073 started. Verbose level = 0
2025-12-05 13:35:40 (32222): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-05 13:35:40 (32222): Guest Log: [INFO] Mounting shared directory
2025-12-05 13:35:40 (32222): Guest Log: [INFO] Checking for init_data.xml
2025-12-05 13:36:03 (32222): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-05 13:36:03 (32222): Guest Log: [INFO] Detected branch: prod
2025-12-05 13:36:05 (32222): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-05 13:36:05 (32222): Guest Log: Copying input files
2025-12-05 13:36:47 (32222): Guest Log: Copied input files into RunAtlas.
2025-12-05 13:36:47 (32222): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-05 13:36:47 (32222): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-05 13:36:47 (32222): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-05 13:36:47 (32222): Guest Log: Further information can be found at the LHC@home message board.
2025-12-05 13:37:44 (32222): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-05 13:37:45 (32222): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-05 13:37:45 (32222): Guest Log: 2.6.3.0 1560 1 30160 153660 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-05 13:37:52 (32222): Guest Log: copied the webapp to /var/www
2025-12-05 13:37:52 (32222): Guest Log: ATHENA_PROC_NUMBER=3
2025-12-05 13:37:52 (32222): Guest Log: ATHENA_CORE_NUMBER=3
2025-12-05 13:37:53 (32222): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-05 13:37:53 (32222): Guest Log:  *** Starting ATLAS job. (PandaID=6898414628 taskID=47556173) ***
2025-12-05 15:14:04 (32222): Status Report: Elapsed Time: '6000.000000'
2025-12-05 15:14:04 (32222): Status Report: CPU Time: '15157.840000'
2025-12-05 16:53:04 (32222): Status Report: Elapsed Time: '12000.000000'
2025-12-05 16:53:04 (32222): Status Report: CPU Time: '36224.580000'
2025-12-05 18:32:05 (32222): Status Report: Elapsed Time: '18000.000000'
2025-12-05 18:32:05 (32222): Status Report: CPU Time: '57653.380000'
2025-12-05 20:11:05 (32222): Status Report: Elapsed Time: '24000.000000'
2025-12-05 20:11:05 (32222): Status Report: CPU Time: '79217.690000'
2025-12-05 21:50:06 (32222): Status Report: Elapsed Time: '30000.000000'
2025-12-05 21:50:06 (32222): Status Report: CPU Time: '101171.560000'
2025-12-05 23:29:06 (32222): Status Report: Elapsed Time: '36000.000000'
2025-12-05 23:29:06 (32222): Status Report: CPU Time: '122393.340000'
2025-12-06 01:08:07 (32222): Status Report: Elapsed Time: '42000.000000'
2025-12-06 01:08:07 (32222): Status Report: CPU Time: '144192.910000'
2025-12-06 02:47:07 (32222): Status Report: Elapsed Time: '48000.000000'
2025-12-06 02:47:07 (32222): Status Report: CPU Time: '165438.070000'
2025-12-06 04:26:08 (32222): Status Report: Elapsed Time: '54000.000000'
2025-12-06 04:26:08 (32222): Status Report: CPU Time: '186625.920000'
2025-12-06 06:05:08 (32222): Status Report: Elapsed Time: '60000.000000'
2025-12-06 06:05:08 (32222): Status Report: CPU Time: '208038.820000'
2025-12-06 07:06:50 (32222): Guest Log:  *** Job finished ***
2025-12-06 07:06:50 (32222): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:05:57,323 | INFO     | [data] copytool_out thread has finished
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:05:58,566 | INFO     | [data] queue_monitor thread has finished
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:41,999 | INFO     | [monitor] cgroup control has ended
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:42,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557133137728)>', '<ExcThread(monitor, started 140556537677568)>']
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:43,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:43,121 | INFO     | [monitor] control thread has ended
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,363 | INFO     | all workflow threads have been joined
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,363 | INFO     | end of generic workflow (traces error code: 0)
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,363 | INFO     | traces error code: 0
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,533 [wrapper] ==== pilot stdout END ====
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,539 [wrapper] ==== wrapper stdout RESUME ====
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,545 [wrapper] pilotpid: 6026
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,550 [wrapper] Pilot exit status: 0
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,610 [wrapper] pandaids: 6898414628
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,665 [wrapper] cleanup supervisor_pilot 25896 6027
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,678 [wrapper] Test setup, not cleaning
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,688 [wrapper] apfmon messages muted
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,698 [wrapper] ==== wrapper stdout END ====
2025-12-06 07:06:50 (32222): Guest Log: 2025-12-06 12:06:47,703 [wrapper] ==== wrapper stderr END ====
2025-12-06 07:06:50 (32222): Guest Log:  *** Error codes and diagnostics ***
2025-12-06 07:06:50 (32222): Guest Log:     "exeErrorCode": 0,
2025-12-06 07:06:50 (32222): Guest Log:     "exeErrorDiag": "",
2025-12-06 07:06:50 (32222): Guest Log:     "pilotErrorCode": 0,
2025-12-06 07:06:50 (32222): Guest Log:     "pilotErrorDiag": "",
2025-12-06 07:06:50 (32222): Guest Log:  *** Listing of results directory ***
2025-12-06 07:06:50 (32222): Guest Log: total 913556
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 16:12 pilot3.tar.gz
2025-12-06 07:06:50 (32222): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 16:36 runpilot2-wrapper.sh
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 16:37 queuedata.json
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas      8966 Dec  5 18:36 init_data.xml
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas    590110 Dec  5 18:36 input.tar.gz
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Dec  5 18:36 start_atlas.sh
2025-12-06 07:06:50 (32222): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  5 18:36 EVNT.47483658._003216.pool.root.1 -> /data/./ATLAS.root_0
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Dec  5 18:37 pandaJob.out
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas    985852 Dec  5 18:43 agis_schedconf.cvmfs.json
2025-12-06 07:06:50 (32222): Guest Log: drwx------. 5 atlas atlas      4096 Dec  5 18:44 pilot3
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas 911940973 Dec  6 12:05 HITS.47556173._001721.pool.root.1
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas      1038 Dec  6 12:05 memory_monitor_summary.json
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  6 12:05 agis_ddmendpoints.agis.ALL.json
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas   1591394 Dec  6 12:05 log.47556173._001721.job.log.tgz.1
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas        95 Dec  6 12:05 pilot_heartbeat.json
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas      8650 Dec  6 12:05 heartbeat.json
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas      4612 Dec  6 12:06 pilotlog.txt
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas   8256829 Dec  6 12:06 log.47556173._001721.job.log.1
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas       353 Dec  6 12:06 output.list
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  6 12:06 runtime_log
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas   9871360 Dec  6 12:06 result.tar.gz
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas       661 Dec  6 12:06 SArLDmQgXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUFNKDm297PIn.diag
2025-12-06 07:06:50 (32222): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Dec  6 12:06 runtime_log.err
2025-12-06 07:06:50 (32222): Guest Log: Looking for outputfile HITS.47556173._001721.pool.root.1
2025-12-06 07:06:50 (32222): Guest Log: HITS file was successfully produced
2025-12-06 07:06:50 (32222): Guest Log: -rw-------. 1 atlas atlas 911940973 Dec  6 12:05 /home/atlas/RunAtlas/HITS.47556173._001721.pool.root.1
2025-12-06 07:06:50 (32222): Guest Log: Successfully finished the ATLAS job!
2025-12-06 07:06:50 (32222): Guest Log: Copying the results back to the shared directory!
2025-12-06 07:06:50 (32222): Guest Log:  *** Contents of shared directory: ***
2025-12-06 07:06:51 (32222): Guest Log: total 411420
2025-12-06 07:06:51 (32222): Guest Log: -rw-r--r--. 1 root root 410792910 Dec  5 18:34 ATLAS.root_0
2025-12-06 07:06:51 (32222): Guest Log: -rw-r--r--. 1 root root      8966 Dec  5 18:34 init_data.xml
2025-12-06 07:06:51 (32222): Guest Log: -rw-r--r--. 1 root root    590110 Dec  5 18:34 input.tar.gz
2025-12-06 07:06:51 (32222): Guest Log: -rw-r--r--. 1 root root   9871360 Dec  6 12:06 result.tar.gz
2025-12-06 07:06:51 (32222): Guest Log: -rw-r--r--. 1 root root     15847 Dec  5 18:34 start_atlas.sh
2025-12-06 07:06:51 (32222): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-06 07:06:51 (32222): VM Completion File Detected.
2025-12-06 07:06:51 (32222): Powering off VM.
2025-12-06 07:06:52 (32222): Successfully stopped VM.
2025-12-06 07:06:52 (32222): Deregistering VM. (boinc_1e0eb02963e54084, slot#14)
2025-12-06 07:06:52 (32222): Removing network bandwidth throttle group from VM.
2025-12-06 07:06:52 (32222): Removing VM from VirtualBox.
2025-12-06 07:06:57 (32222): called boinc_finish(0)

</stderr_txt>
]]>

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