Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:41 (942): wrapper (7.7.26015): starting
07:04:41 (942): wrapper: running run_atlas (--nthreads 8)
[2025-12-05 07:04:41] Arguments: --nthreads 8
[2025-12-05 07:04:41] Threads: 8
[2025-12-05 07:04:41] Checking for CVMFS
[2025-12-05 07:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 07:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 07:04:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 07:04:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 07:04:42] 2.11.2.0 2895 86236 80248 153649 2 1 19369360 20275201 1 130560 0 26269183 99.849 5727433 32856 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-05 07:04:42] CVMFS is ok
[2025-12-05 07:04:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 07:04:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 07:04:42] Further information can be found at the LHC@home message board.
[2025-12-05 07:04:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 07:04:42] Checking for apptainer binary...
[2025-12-05 07:04:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 07:04:42] Running /usr/bin/apptainer --version
[2025-12-05 07:04:42] apptainer version 1.3.2-1.el7
[2025-12-05 07:04:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 07:04:44] c-204-7.aglt2.org
[2025-12-05 07:04:44] apptainer works
[2025-12-05 07:04:44] Set ATHENA_PROC_NUMBER=8
[2025-12-05 07:04:44] Set ATHENA_CORE_NUMBER=8
[2025-12-05 07:04:44] Starting ATLAS job with PandaID=6898271245
[2025-12-05 07:04:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 20:13:41]  *** The last 200 lines of the pilot log: ***
[2025-12-05 20:13:41] 2025-12-06 01:13:06,436 | INFO     | monitor loop #3479: job 0:6898271245 is in state 'finished'
[2025-12-05 20:13:41] 2025-12-06 01:13:06,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 20:13:41] 2025-12-06 01:13:07,756 | INFO     | time since job start (47283s) is within the limit (172800.0s)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,745 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-05 20:13:41] 2025-12-06 01:13:08,748 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1596.0
[2025-12-05 20:13:41] 2025-12-06 01:13:08,750 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898271245/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,750 | INFO     | extracted standard info from prmon json
[2025-12-05 20:13:41] 2025-12-06 01:13:08,750 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 20:13:41] 2025-12-06 01:13:08,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 20:13:41] 2025-12-06 01:13:08,764 | INFO     | fitting pss+swap vs Time
[2025-12-05 20:13:41] 2025-12-06 01:13:08,766 | INFO     | sum of square deviations: 144338901204.0311
[2025-12-05 20:13:41] 2025-12-06 01:13:08,784 | INFO     | sum of deviations: 976919048071.3928
[2025-12-05 20:13:41] 2025-12-06 01:13:08,784 | INFO     | mean x: 1764959943.5470967
[2025-12-05 20:13:41] 2025-12-06 01:13:08,784 | INFO     | mean y: 2860145.6193548385
[2025-12-05 20:13:41] 2025-12-06 01:13:08,784 | INFO     | intersect: -11942796732.403316
[2025-12-05 20:13:41] 2025-12-06 01:13:08,785 | INFO     | chi2: 7.2096378982702225
[2025-12-05 20:13:41] 2025-12-06 01:13:08,786 | INFO     | sum of square deviations: 141563359875.02454
[2025-12-05 20:13:41] 2025-12-06 01:13:08,799 | INFO     | sum of deviations: 1252943658782.5115
[2025-12-05 20:13:41] 2025-12-06 01:13:08,800 | INFO     | mean x: 1764959791.0506494
[2025-12-05 20:13:41] 2025-12-06 01:13:08,800 | INFO     | mean y: 2875312.5766233765
[2025-12-05 20:13:41] 2025-12-06 01:13:08,800 | INFO     | intersect: -15618364393.48354
[2025-12-05 20:13:41] 2025-12-06 01:13:08,801 | INFO     | chi2: 3.6688398534892688
[2025-12-05 20:13:41] 2025-12-06 01:13:08,801 | INFO     | current chi2=3.6688398534892688 (change=49.11200943435012 %)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,802 | INFO     | sum of square deviations: 138823633170.99893
[2025-12-05 20:13:41] 2025-12-06 01:13:08,815 | INFO     | sum of deviations: 1350401867570.9963
[2025-12-05 20:13:41] 2025-12-06 01:13:08,816 | INFO     | mean x: 1764959638.5542483
[2025-12-05 20:13:41] 2025-12-06 01:13:08,816 | INFO     | mean y: 2880731.662745098
[2025-12-05 20:13:41] 2025-12-06 01:13:08,816 | INFO     | intersect: -17165700277.56123
[2025-12-05 20:13:41] 2025-12-06 01:13:08,817 | INFO     | chi2: 3.0699789189386095
[2025-12-05 20:13:41] 2025-12-06 01:13:08,817 | INFO     | current chi2=3.0699789189386095 (change=16.32289656854631 %)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,817 | INFO     | right removable region: 764
[2025-12-05 20:13:41] 2025-12-06 01:13:08,818 | INFO     | sum of square deviations: 141563101235.02463
[2025-12-05 20:13:41] 2025-12-06 01:13:08,832 | INFO     | sum of deviations: 732747251526.9995
[2025-12-05 20:13:41] 2025-12-06 01:13:08,832 | INFO     | mean x: 1764960096.0506494
[2025-12-05 20:13:41] 2025-12-06 01:13:08,832 | INFO     | mean y: 2873547.1025974024
[2025-12-05 20:13:41] 2025-12-06 01:13:08,832 | INFO     | intersect: -9132767366.05345
[2025-12-05 20:13:41] 2025-12-06 01:13:08,833 | INFO     | chi2: 4.509119779166044
[2025-12-05 20:13:41] 2025-12-06 01:13:08,833 | INFO     | current chi2=4.509119779166044 (change=37.45705619629111 %)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,834 | INFO     | sum of square deviations: 138823209709.21036
[2025-12-05 20:13:41] 2025-12-06 01:13:08,848 | INFO     | sum of deviations: 670690515022.7169
[2025-12-05 20:13:41] 2025-12-06 01:13:08,848 | INFO     | mean x: 1764960248.551634
[2025-12-05 20:13:41] 2025-12-06 01:13:08,848 | INFO     | mean y: 2877000.905882353
[2025-12-05 20:13:41] 2025-12-06 01:13:08,848 | INFO     | intersect: -8524098427.592523
[2025-12-05 20:13:41] 2025-12-06 01:13:08,849 | INFO     | chi2: 4.411140955244062
[2025-12-05 20:13:41] 2025-12-06 01:13:08,849 | INFO     | current chi2=4.411140955244062 (change=2.172903553697629 %)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,849 | INFO     | left removable region: 20
[2025-12-05 20:13:41] 2025-12-06 01:13:08,850 | INFO     | sum of square deviations: 127702054971.62907
[2025-12-05 20:13:41] 2025-12-06 01:13:08,867 | INFO     | sum of deviations: 962296761025.3478
[2025-12-05 20:13:41] 2025-12-06 01:13:08,867 | INFO     | mean x: 1764960218.0564516
[2025-12-05 20:13:41] 2025-12-06 01:13:08,867 | INFO     | mean y: 2903428.563172043
[2025-12-05 20:13:41] 2025-12-06 01:13:08,867 | INFO     | intersect: -13296925627.058865
[2025-12-05 20:13:41] 2025-12-06 01:13:08,868 | INFO     | chi2: 0.16558758577301488
[2025-12-05 20:13:41] 2025-12-06 01:13:08,868 | INFO     | current memory leak: 7.54 B/s (using 744 data points, chi2=0.17)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,869 | INFO     | could have reported an average CPU frequency of 2174 MHz (29 samples)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,869 | INFO     | ..............................
[2025-12-05 20:13:41] 2025-12-06 01:13:08,869 | INFO     | . Timing measurements:
[2025-12-05 20:13:41] 2025-12-06 01:13:08,869 | INFO     | . get job = 0 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,869 | INFO     | . initial setup = 2 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | . payload setup = 8 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | . stage-in = 0 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | . payload execution = 47241 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | . stage-out = 3 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | . log creation = 0 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,870 | INFO     | ..............................
[2025-12-05 20:13:41] 2025-12-06 01:13:08,968 | INFO     | 
[2025-12-05 20:13:41] 2025-12-06 01:13:08,968 | INFO     | job summary report
[2025-12-05 20:13:41] 2025-12-06 01:13:08,975 | INFO     | --------------------------------------------------
[2025-12-05 20:13:41] 2025-12-06 01:13:08,975 | INFO     | PanDA job id: 6898271245
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | task id: 47556161
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | errors: (none)
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | pilot state: finished 
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | transexitcode: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | exeerrorcode: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | exeerrordiag: 
[2025-12-05 20:13:41] 2025-12-06 01:13:08,976 | INFO     | exitcode: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | exitmsg: OK
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | cpuconsumptiontime: 365278 s
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | nevents: 1000
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | neventsw: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | pid: 12831
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | pgrp: 12831
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | corecount: 8
[2025-12-05 20:13:41] 2025-12-06 01:13:08,977 | INFO     | event service: False
[2025-12-05 20:13:41] 2025-12-06 01:13:08,978 | INFO     | sizes: {0: 2284088, 1: 2284343, 7: 2284605, 12: 2284633, 47253: 2331394, 47257: 2340388, 47260: 2340572, 47267: 2340818}
[2025-12-05 20:13:41] 2025-12-06 01:13:08,978 | INFO     | --------------------------------------------------
[2025-12-05 20:13:41] 2025-12-06 01:13:08,978 | INFO     | 
[2025-12-05 20:13:41] 2025-12-06 01:13:08,978 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-05 20:13:41] 2025-12-06 01:13:09,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 20:13:41] 2025-12-06 01:13:09,008 | INFO     | job 6898271245 has completed (purged errors)
[2025-12-05 20:13:41] 2025-12-06 01:13:09,009 | INFO     | overall cleanup function is called
[2025-12-05 20:13:41] 2025-12-06 01:13:10,023 | INFO     | --- collectZombieJob: --- 10, [12831]
[2025-12-05 20:13:41] 2025-12-06 01:13:10,023 | INFO     | zombie collector waiting for pid 12831
[2025-12-05 20:13:41] 2025-12-06 01:13:10,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 20:13:41] 2025-12-06 01:13:10,024 | INFO     | collected zombie processes
[2025-12-05 20:13:41] 2025-12-06 01:13:10,024 | INFO     | will attempt to kill all subprocesses of pid=12831
[2025-12-05 20:13:41] 2025-12-06 01:13:10,120 | INFO     | process IDs to be killed: [12831] (in reverse order)
[2025-12-05 20:13:41] 2025-12-06 01:13:10,185 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 20:13:41] 2025-12-06 01:13:10,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 20:13:41] 2025-12-06 01:13:10,189 | INFO     | did not find any defunct processes belonging to 12831
[2025-12-05 20:13:41] 2025-12-06 01:13:10,192 | INFO     | did not find any defunct processes belonging to 12831
[2025-12-05 20:13:41] 2025-12-06 01:13:10,195 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 20:13:41] 2025-12-06 01:13:10,195 | INFO     | ready for new job
[2025-12-05 20:13:41] 2025-12-06 01:13:10,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 20:13:41] 2025-12-06 01:13:10,198 | INFO     | ***************************************
[2025-12-05 20:13:41] 2025-12-06 01:13:10,199 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 20:13:41] 2025-12-06 01:13:10,199 | INFO     | ***************************************
[2025-12-05 20:13:41] 2025-12-06 01:13:10,199 | INFO     | 
[2025-12-05 20:13:41] 2025-12-06 01:13:10,199 | INFO     | architecture information:
[2025-12-05 20:13:41] 2025-12-06 01:13:10,200 | INFO     | executing command: cat /etc/os-release
[2025-12-05 20:13:41] 2025-12-06 01:13:10,217 | INFO     | cat /etc/os-release:
[2025-12-05 20:13:41] NAME="CentOS Linux"
[2025-12-05 20:13:41] VERSION="7 (Core)"
[2025-12-05 20:13:41] ID="centos"
[2025-12-05 20:13:41] ID_LIKE="rhel fedora"
[2025-12-05 20:13:41] VERSION_ID="7"
[2025-12-05 20:13:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 20:13:41] ANSI_COLOR="0;31"
[2025-12-05 20:13:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 20:13:41] HOME_URL="https://www.centos.org/"
[2025-12-05 20:13:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 20:13:41] 
[2025-12-05 20:13:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 20:13:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 20:13:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 20:13:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 20:13:41] 
[2025-12-05 20:13:41] 2025-12-06 01:13:10,218 | INFO     | ***************************************
[2025-12-05 20:13:41] 2025-12-06 01:13:10,720 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-05 20:13:41] 2025-12-06 01:13:10,739 | INFO     | sufficient remaining disk space (17476616192 B)
[2025-12-05 20:13:41] 2025-12-06 01:13:10,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 20:13:41] 2025-12-06 01:13:10,740 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 20:13:41] 2025-12-06 01:13:10,740 | INFO     | update_server=False
[2025-12-05 20:13:41] 2025-12-06 01:13:10,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 20:13:41] 2025-12-06 01:13:10,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 20:13:41] 2025-12-06 01:13:10,741 | INFO     | aborting loop
[2025-12-05 20:13:41] 2025-12-06 01:13:10,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 20:13:41] 2025-12-06 01:13:11,062 | INFO     | all payload control threads have been joined
[2025-12-05 20:13:41] 2025-12-06 01:13:11,635 | INFO     | all job control threads have been joined
[2025-12-05 20:13:41] 2025-12-06 01:13:11,728 | INFO     | all data control threads have been joined
[2025-12-05 20:13:41] 2025-12-06 01:13:11,743 | INFO     | [job] queue monitor thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,745 | INFO     | [job] retrieve thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,746 | INFO     | [job] job monitor thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,792 | INFO     | [payload] failed_post thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 20:13:41] 2025-12-06 01:13:11,837 | INFO     | [data] copytool_in thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,887 | INFO     | [job] validate thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:11,930 | INFO     | [payload] validate_post thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,067 | INFO     | [payload] control thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,257 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,640 | INFO     | [job] control thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,734 | INFO     | [data] control thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,807 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:12,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 20:13:41] 2025-12-06 01:13:13,176 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:13,827 | INFO     | [data] copytool_out thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:16,886 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:20,841 | INFO     | job.realtimelogging is not enabled
[2025-12-05 20:13:41] 2025-12-06 01:13:21,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 20:13:41] 2025-12-06 01:13:22,485 | INFO     | [monitor] cgroup control has ended
[2025-12-05 20:13:41] 2025-12-06 01:13:23,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056951170880)>', '<ExcThread(monitor, started 140055905552128)>']
[2025-12-05 20:13:41] 2025-12-06 01:13:28,034 | INFO     | all workflow threads have been joined
[2025-12-05 20:13:41] 2025-12-06 01:13:28,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 20:13:41] 2025-12-06 01:13:28,035 | INFO     | traces error code: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:28,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 20:13:41] 2025-12-06 01:13:40,976 | INFO     | PID=5157 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-05 20:13:41] 2025-12-06 01:13:40,977 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 20:13:41] 2025-12-06 01:13:40,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 20:13:41] 2025-12-06 01:13:40,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 20:13:41] 2025-12-06 01:13:40,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 20:13:41] 2025-12-06 01:13:40,978 | INFO     | [monitor] control thread has ended
[2025-12-05 20:13:41] 2025-12-06 01:13:41,091 [wrapper] ==== pilot stdout END ====
[2025-12-05 20:13:41] 2025-12-06 01:13:41,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 20:13:41] 2025-12-06 01:13:41,101 [wrapper] pilotpid: 5157
[2025-12-05 20:13:41] 2025-12-06 01:13:41,106 [wrapper] Pilot exit status: 0
[2025-12-05 20:13:41] 2025-12-06 01:13:41,123 [wrapper] pandaids: 6898271245
[2025-12-05 20:13:41] 2025-12-06 01:13:41,168 [wrapper] cleanup supervisor_pilot  4967 5158
[2025-12-05 20:13:41] 2025-12-06 01:13:41,173 [wrapper] Test setup, not cleaning
[2025-12-05 20:13:41] 2025-12-06 01:13:41,179 [wrapper] apfmon messages muted
[2025-12-05 20:13:41] 2025-12-06 01:13:41,184 [wrapper] ==== wrapper stdout END ====
[2025-12-05 20:13:41] 2025-12-06 01:13:41,189 [wrapper] ==== wrapper stderr END ====
[2025-12-05 20:13:41]  *** Error codes and diagnostics ***
[2025-12-05 20:13:41]     "exeErrorCode": 0,
[2025-12-05 20:13:41]     "exeErrorDiag": "",
[2025-12-05 20:13:41]     "pilotErrorCode": 0,
[2025-12-05 20:13:41]     "pilotErrorDiag": "",
[2025-12-05 20:13:41]  *** Listing of results directory ***
[2025-12-05 20:13:41] total 1310320
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-12-05 20:13:41] -rwx------ 1 boincer umatlas     36292 Nov 26 09:55 runpilot2-wrapper.sh
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:55 queuedata.json
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas       100 Dec  5 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 20:13:41] -rwxr-xr-x 1 boincer umatlas      7986 Dec  5 07:04 run_atlas
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas       105 Dec  5 07:04 job.xml
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas 409129550 Dec  5 07:04 EVNT.47483658._002530.pool.root.1
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas     15847 Dec  5 07:04 start_atlas.sh
[2025-12-05 20:13:41] drwxrwx--x 2 boincer umatlas      4096 Dec  5 07:04 shared
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas    590105 Dec  5 07:04 input.tar.gz
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas         0 Dec  5 07:04 boinc_lockfile
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas      2786 Dec  5 07:04 pandaJob.out
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas        57 Dec  5 07:04 setup.sh.local
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas    985507 Dec  5 07:05 agis_schedconf.cvmfs.json
[2025-12-05 20:13:41] drwx------ 5 boincer umatlas      4096 Dec  5 07:05 pilot3
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas       533 Dec  5 19:58 boinc_task_state.xml
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas      5912 Dec  5 20:11 init_data.xml
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas 911659683 Dec  5 20:12 HITS.47556161._005124.pool.root.1
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas      1062 Dec  5 20:12 memory_monitor_summary.json
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas   1516240 Dec  5 20:12 agis_ddmendpoints.agis.ALL.json
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas   2015985 Dec  5 20:12 log.47556161._005124.job.log.tgz.1
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas      8666 Dec  5 20:13 heartbeat.json
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas      8192 Dec  5 20:13 boinc_mmap_file
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas        29 Dec  5 20:13 wrapper_checkpoint.txt
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas        95 Dec  5 20:13 pilot_heartbeat.json
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas       744 Dec  5 20:13 pilotlog.txt
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas   6517481 Dec  5 20:13 log.47556161._005124.job.log.1
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas       353 Dec  5 20:13 output.list
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas       620 Dec  5 20:13 runtime_log
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas   8550400 Dec  5 20:13 result.tar.gz
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas      9338 Dec  5 20:13 runtime_log.err
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas       667 Dec  5 20:13 k6yKDm16Vi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv2MKDm2quvsm.diag
[2025-12-05 20:13:41] -rw-r--r-- 1 boincer umatlas     21278 Dec  5 20:13 stderr.txt
[2025-12-05 20:13:41] HITS file was successfully produced:
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas 911659683 Dec  5 20:12 shared/HITS.pool.root.1
[2025-12-05 20:13:41]  *** Contents of shared directory: ***
[2025-12-05 20:13:41] total 1298792
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas 409129550 Dec  5 07:04 ATLAS.root_0
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas     15847 Dec  5 07:04 start_atlas.sh
[2025-12-05 20:13:41] -rw-r--r-- 2 boincer umatlas    590105 Dec  5 07:04 input.tar.gz
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas 911659683 Dec  5 20:12 HITS.pool.root.1
[2025-12-05 20:13:41] -rw------- 1 boincer umatlas   8550400 Dec  5 20:13 result.tar.gz
20:13:43 (942): run_atlas exited; CPU time 361159.689974
20:13:43 (942): called boinc_finish(0)

</stderr_txt>
]]>

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