Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:48:24 (917395): wrapper (7.7.26015): starting
17:48:24 (917395): wrapper: running run_atlas (--nthreads 4)
[2025-12-07 17:48:24] Arguments: --nthreads 4
[2025-12-07 17:48:24] Threads: 4
[2025-12-07 17:48:24] Checking for CVMFS
[2025-12-07 17:48:24] No cvmfs_config command found, will try listing directly
[2025-12-07 17:48:24] CVMFS is ok
[2025-12-07 17:48:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-07 17:48:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-07 17:48:24] Further information can be found at the LHC@home message board.
[2025-12-07 17:48:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-07 17:48:24] Checking for apptainer binary...
[2025-12-07 17:48:24] which: no apptainer in ((null))
[2025-12-07 17:48:24] apptainer is not installed, using version from CVMFS
[2025-12-07 17:48:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-07 17:48:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-07 17:48:24] apptainer works
[2025-12-07 17:48:24] Set ATHENA_PROC_NUMBER=4
[2025-12-07 17:48:24] Set ATHENA_CORE_NUMBER=4
[2025-12-07 17:48:24] Starting ATLAS job with PandaID=6905165335
[2025-12-07 17:48:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 05:45:59]  *** The last 200 lines of the pilot log: ***
[2025-12-08 05:45:59] 2025-12-08 04:35:42,554 | INFO     | PID=921183 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 05:45:59] 2025-12-08 04:35:43,554 | INFO     | time since job start (42428s) is within the limit (172800.0s)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,458 | INFO     | monitor loop #3065: job 0:6905165335 is in state 'finished'
[2025-12-08 05:45:59] 2025-12-08 04:35:44,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,827 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-08 05:45:59] 2025-12-08 04:35:44,838 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2797.1423281249995
[2025-12-08 05:45:59] 2025-12-08 04:35:44,850 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6905165335/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,851 | INFO     | extracted standard info from prmon json
[2025-12-08 05:45:59] 2025-12-08 04:35:44,851 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 05:45:59] 2025-12-08 04:35:44,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 05:45:59] 2025-12-08 04:35:44,865 | INFO     | fitting pss+swap vs Time
[2025-12-08 05:45:59] 2025-12-08 04:35:44,866 | INFO     | sum of square deviations: 104095495940.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,876 | INFO     | sum of deviations: 410498341732.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,876 | INFO     | mean x: 1765147313.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,876 | INFO     | mean y: 2733402.201438849
[2025-12-08 05:45:59] 2025-12-08 04:35:44,876 | INFO     | intersect: -6958086932.588501
[2025-12-08 05:45:59] 2025-12-08 04:35:44,877 | INFO     | chi2: 4.7606187784165055
[2025-12-08 05:45:59] 2025-12-08 04:35:44,878 | INFO     | sum of square deviations: 101864951792.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,888 | INFO     | sum of deviations: 591177039161.5001
[2025-12-08 05:45:59] 2025-12-08 04:35:44,888 | INFO     | mean x: 1765147160.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,888 | INFO     | mean y: 2745744.2420289856
[2025-12-08 05:45:59] 2025-12-08 04:35:44,888 | INFO     | intersect: -10241351500.847424
[2025-12-08 05:45:59] 2025-12-08 04:35:44,889 | INFO     | chi2: 2.2779999630767214
[2025-12-08 05:45:59] 2025-12-08 04:35:44,889 | INFO     | current chi2=2.2779999630767214 (change=52.149078321401774 %)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,890 | INFO     | sum of square deviations: 99666501270.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,899 | INFO     | sum of deviations: 583212202458.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,899 | INFO     | mean x: 1765147008.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,899 | INFO     | mean y: 2745192.0204379563
[2025-12-08 05:45:59] 2025-12-08 04:35:44,899 | INFO     | intersect: -10326254633.196653
[2025-12-08 05:45:59] 2025-12-08 04:35:44,900 | INFO     | chi2: 2.2775489618596354
[2025-12-08 05:45:59] 2025-12-08 04:35:44,900 | INFO     | current chi2=2.2775489618596354 (change=0.01979812222985437 %)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,901 | INFO     | right removable region: 684
[2025-12-08 05:45:59] 2025-12-08 04:35:44,901 | INFO     | sum of square deviations: 101864951792.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,911 | INFO     | sum of deviations: 242939850286.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,911 | INFO     | mean x: 1765147465.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,911 | INFO     | mean y: 2744831.247826087
[2025-12-08 05:45:59] 2025-12-08 04:35:44,911 | INFO     | intersect: -4206992212.320264
[2025-12-08 05:45:59] 2025-12-08 04:35:44,912 | INFO     | chi2: 2.5645734326595853
[2025-12-08 05:45:59] 2025-12-08 04:35:44,913 | INFO     | current chi2=2.5645734326595853 (change=46.12940980935627 %)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,913 | INFO     | sum of square deviations: 99666501270.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,923 | INFO     | sum of deviations: 234741147208.00003
[2025-12-08 05:45:59] 2025-12-08 04:35:44,923 | INFO     | mean x: 1765147618.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,923 | INFO     | mean y: 2745398.5781021896
[2025-12-08 05:45:59] 2025-12-08 04:35:44,923 | INFO     | intersect: -4154647221.4185863
[2025-12-08 05:45:59] 2025-12-08 04:35:44,924 | INFO     | chi2: 2.563039370935122
[2025-12-08 05:45:59] 2025-12-08 04:35:44,924 | INFO     | current chi2=2.563039370935122 (change=0.0598174224581414 %)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,924 | INFO     | left removable region: 20
[2025-12-08 05:45:59] 2025-12-08 04:35:44,925 | INFO     | sum of square deviations: 90778222990.0
[2025-12-08 05:45:59] 2025-12-08 04:35:44,934 | INFO     | sum of deviations: 401346689943.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,934 | INFO     | mean x: 1765147587.5
[2025-12-08 05:45:59] 2025-12-08 04:35:44,935 | INFO     | mean y: 2757844.387048193
[2025-12-08 05:45:59] 2025-12-08 04:35:44,935 | INFO     | intersect: -7801273983.630999
[2025-12-08 05:45:59] 2025-12-08 04:35:44,935 | INFO     | chi2: 0.04113303218707307
[2025-12-08 05:45:59] 2025-12-08 04:35:44,936 | INFO     | current memory leak: 4.42 B/s (using 664 data points, chi2=0.04)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | could have reported an average CPU frequency of 2727 MHz (27 samples)
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | ..............................
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . Timing measurements:
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . get job = 0 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . initial setup = 1 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . payload setup = 10 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . stage-in = 0 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,937 | INFO     | . payload execution = 42387 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,938 | INFO     | . stage-out = 2 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,938 | INFO     | . log creation = 0 s
[2025-12-08 05:45:59] 2025-12-08 04:35:44,938 | INFO     | ..............................
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | 
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | job summary report
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | --------------------------------------------------
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | PanDA job id: 6905165335
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | task id: 47531058
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | errors: (none)
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 05:45:59] 2025-12-08 04:35:45,040 | INFO     | pilot state: finished 
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | transexitcode: 0
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | exeerrorcode: 0
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | exeerrordiag: 
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | exitcode: 0
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | exitmsg: OK
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | cpuconsumptiontime: 168209 s
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | nevents: 1000
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | neventsw: 0
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | pid: 928795
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | pgrp: 928795
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | corecount: 4
[2025-12-08 05:45:59] 2025-12-08 04:35:45,041 | INFO     | event service: False
[2025-12-08 05:45:59] 2025-12-08 04:35:45,042 | INFO     | sizes: {0: 2284356, 5: 2284618, 11: 2284674, 42401: 2347889, 42404: 2356905, 42406: 2356961, 42414: 2357335}
[2025-12-08 05:45:59] 2025-12-08 04:35:45,042 | INFO     | --------------------------------------------------
[2025-12-08 05:45:59] 2025-12-08 04:35:45,042 | INFO     | 
[2025-12-08 05:45:59] 2025-12-08 04:35:45,042 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 05:45:59] 2025-12-08 04:35:45,064 | INFO     | job 6905165335 has completed (purged errors)
[2025-12-08 05:45:59] 2025-12-08 04:35:45,064 | INFO     | overall cleanup function is called
[2025-12-08 05:45:59] 2025-12-08 04:35:46,077 | INFO     | --- collectZombieJob: --- 10, [928795]
[2025-12-08 05:45:59] 2025-12-08 04:35:46,077 | INFO     | zombie collector waiting for pid 928795
[2025-12-08 05:45:59] 2025-12-08 04:35:46,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 05:45:59] 2025-12-08 04:35:46,078 | INFO     | collected zombie processes
[2025-12-08 05:45:59] 2025-12-08 04:35:46,078 | INFO     | will attempt to kill all subprocesses of pid=928795
[2025-12-08 05:45:59] 2025-12-08 04:35:46,436 | INFO     | process IDs to be killed: [928795] (in reverse order)
[2025-12-08 05:45:59] 2025-12-08 04:35:46,537 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 05:45:59] 2025-12-08 04:35:46,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 05:45:59] 2025-12-08 04:35:46,550 | INFO     | did not find any defunct processes belonging to 928795
[2025-12-08 05:45:59] 2025-12-08 04:35:46,561 | INFO     | did not find any defunct processes belonging to 928795
[2025-12-08 05:45:59] 2025-12-08 04:35:46,562 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 05:45:59] 2025-12-08 04:35:46,562 | INFO     | ready for new job
[2025-12-08 05:45:59] 2025-12-08 04:35:46,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 05:45:59] 2025-12-08 04:35:46,566 | INFO     | ***************************************
[2025-12-08 05:45:59] 2025-12-08 04:35:46,567 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 05:45:59] 2025-12-08 04:35:46,567 | INFO     | ***************************************
[2025-12-08 05:45:59] 2025-12-08 04:35:46,567 | INFO     | 
[2025-12-08 05:45:59] 2025-12-08 04:35:46,571 | INFO     | architecture information:
[2025-12-08 05:45:59] 2025-12-08 04:35:46,571 | INFO     | executing command: cat /etc/os-release
[2025-12-08 05:45:59] 2025-12-08 04:35:46,591 | INFO     | cat /etc/os-release:
[2025-12-08 05:45:59] NAME="CentOS Linux"
[2025-12-08 05:45:59] VERSION="7 (Core)"
[2025-12-08 05:45:59] ID="centos"
[2025-12-08 05:45:59] ID_LIKE="rhel fedora"
[2025-12-08 05:45:59] VERSION_ID="7"
[2025-12-08 05:45:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 05:45:59] ANSI_COLOR="0;31"
[2025-12-08 05:45:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 05:45:59] HOME_URL="https://www.centos.org/"
[2025-12-08 05:45:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 05:45:59] 
[2025-12-08 05:45:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 05:45:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 05:45:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 05:45:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 05:45:59] 
[2025-12-08 05:45:59] 2025-12-08 04:35:46,592 | INFO     | ***************************************
[2025-12-08 05:45:59] 2025-12-08 04:35:47,095 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-08 05:45:59] 2025-12-08 04:35:47,112 | INFO     | sufficient remaining disk space (679248658432 B)
[2025-12-08 05:45:59] 2025-12-08 04:35:47,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 05:45:59] 2025-12-08 04:35:47,112 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 05:45:59] 2025-12-08 04:35:47,113 | INFO     | update_server=False
[2025-12-08 05:45:59] 2025-12-08 04:35:47,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 05:45:59] 2025-12-08 04:35:47,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 05:45:59] 2025-12-08 04:35:47,180 | INFO     | all job control threads have been joined
[2025-12-08 05:45:59] 2025-12-08 04:35:47,185 | INFO     | all data control threads have been joined
[2025-12-08 05:45:59] 2025-12-08 04:35:47,381 | INFO     | all payload control threads have been joined
[2025-12-08 05:45:59] 2025-12-08 04:35:47,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 05:45:59] 2025-12-08 04:35:47,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 05:45:59] 2025-12-08 04:35:47,965 | INFO     | aborting loop
[2025-12-08 05:45:59] 2025-12-08 04:35:48,118 | INFO     | [job] retrieve thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,186 | INFO     | [job] control thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,191 | INFO     | [data] control thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,285 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,386 | INFO     | [payload] control thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,447 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,645 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,668 | INFO     | [data] copytool_in thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,842 | INFO     | [job] validate thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:48,970 | INFO     | [job] job monitor thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:49,384 | INFO     | [payload] validate_post thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:49,428 | INFO     | [payload] failed_post thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:49,578 | INFO     | [data] copytool_out thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:50,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 05:45:59] 2025-12-08 04:35:51,049 | INFO     | [job] queue monitor thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:35:51,119 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 05:45:59] 2025-12-08 04:36:17,142 | INFO     | PID=921183 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-08 05:45:59] 2025-12-08 04:36:17,144 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 05:45:59] 2025-12-08 04:36:17,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 05:45:59] 2025-12-08 04:36:17,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 05:45:59] 2025-12-08 04:36:39,685 | INFO     | [monitor] cgroup control has ended
[2025-12-08 05:45:59] 2025-12-08 04:36:39,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23397129824064)>', '<ExcThread(monitor, started 23396821735168)>']
[2025-12-08 05:45:59] 2025-12-08 04:36:40,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 05:45:59] 2025-12-08 04:36:40,253 | INFO     | [monitor] control thread has ended
[2025-12-08 05:45:59] 2025-12-08 04:36:44,751 | INFO     | all workflow threads have been joined
[2025-12-08 05:45:59] 2025-12-08 04:36:44,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 05:45:59] 2025-12-08 04:36:44,752 | INFO     | traces error code: 0
[2025-12-08 05:45:59] 2025-12-08 04:36:44,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 05:45:59] 2025-12-08 04:36:44,911 [wrapper] ==== pilot stdout END ====
[2025-12-08 05:45:59] 2025-12-08 04:36:44,913 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 05:45:59] 2025-12-08 04:36:44,916 [wrapper] pilotpid: 921183
[2025-12-08 05:45:59] 2025-12-08 04:36:44,919 [wrapper] Pilot exit status: 0
[2025-12-08 05:45:59] 2025-12-08 04:36:44,929 [wrapper] pandaids: 6905165335
[2025-12-08 05:45:59] 2025-12-08 04:36:45,003 [wrapper] cleanup supervisor_pilot 1297560 921184
[2025-12-08 05:45:59] 2025-12-08 04:36:45,006 [wrapper] Test setup, not cleaning
[2025-12-08 05:45:59] 2025-12-08 04:36:45,009 [wrapper] apfmon messages muted
[2025-12-08 05:45:59] 2025-12-08 04:36:45,012 [wrapper] ==== wrapper stdout END ====
[2025-12-08 05:45:59] 2025-12-08 04:36:45,014 [wrapper] ==== wrapper stderr END ====
[2025-12-08 05:45:59]  *** Error codes and diagnostics ***
[2025-12-08 05:45:59]     "exeErrorCode": 0,
[2025-12-08 05:45:59]     "exeErrorDiag": "",
[2025-12-08 05:45:59]     "pilotErrorCode": 0,
[2025-12-08 05:45:59]     "pilotErrorDiag": "",
[2025-12-08 05:45:59]  *** Listing of results directory ***
[2025-12-08 05:45:59] total 1074600
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-08 05:45:59] -rwx------ 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:23 queuedata.json
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc       100 Dec  7 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 05:45:59] -rwxr-xr-x 1 boinc boinc      7986 Dec  7 17:48 run_atlas
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc       105 Dec  7 17:48 job.xml
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc 377852721 Dec  7 17:48 EVNT.47531050._000014.pool.root.1
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc      6638 Dec  7 17:48 init_data.xml
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc     15847 Dec  7 17:48 start_atlas.sh
[2025-12-08 05:45:59] drwxrwx--x 2 boinc boinc      4096 Dec  7 17:48 shared
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc    590132 Dec  7 17:48 input.tar.gz
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc         0 Dec  7 17:48 boinc_lockfile
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc      2876 Dec  7 17:48 pandaJob.out
[2025-12-08 05:45:59] -rw------- 1 boinc boinc    981443 Dec  7 17:48 agis_schedconf.cvmfs.json
[2025-12-08 05:45:59] drwx------ 5 boinc boinc      4096 Dec  7 17:48 pilot3
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc       530 Dec  8 05:30 boinc_task_state.xml
[2025-12-08 05:45:59] -rw------- 1 boinc boinc 703848445 Dec  8 05:35 HITS.47531058._002293.pool.root.1
[2025-12-08 05:45:59] -rw------- 1 boinc boinc      1043 Dec  8 05:35 memory_monitor_summary.json
[2025-12-08 05:45:59] -rw------- 1 boinc boinc   1516240 Dec  8 05:35 agis_ddmendpoints.agis.ALL.json
[2025-12-08 05:45:59] -rw------- 1 boinc boinc   1574237 Dec  8 05:35 log.47531058._002293.job.log.tgz.1
[2025-12-08 05:45:59] -rw------- 1 boinc boinc     28045 Dec  8 05:35 heartbeat.json
[2025-12-08 05:45:59] -rw------- 1 boinc boinc        95 Dec  8 05:36 pilot_heartbeat.json
[2025-12-08 05:45:59] -rw------- 1 boinc boinc      4757 Dec  8 05:36 pilotlog.txt
[2025-12-08 05:45:59] -rw------- 1 boinc boinc   5796674 Dec  8 05:36 log.47531058._002293.job.log.1
[2025-12-08 05:45:59] -rw------- 1 boinc boinc       353 Dec  8 05:36 output.list
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc       620 Dec  8 05:36 runtime_log
[2025-12-08 05:45:59] -rw------- 1 boinc boinc   7413760 Dec  8 05:36 result.tar.gz
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc      9206 Dec  8 05:36 runtime_log.err
[2025-12-08 05:45:59] -rw------- 1 boinc boinc       669 Dec  8 05:36 XXAODmKKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG3LKDmycayLn.diag
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc        28 Dec  8 05:45 wrapper_checkpoint.txt
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc      8192 Dec  8 05:45 boinc_mmap_file
[2025-12-08 05:45:59] -rw-r--r-- 1 boinc boinc     21161 Dec  8 05:45 stderr.txt
[2025-12-08 05:45:59] HITS file was successfully produced:
[2025-12-08 05:45:59] -rw------- 1 boinc boinc 703848445 Dec  8 05:35 shared/HITS.pool.root.1
[2025-12-08 05:45:59]  *** Contents of shared directory: ***
[2025-12-08 05:45:59] total 1064196
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc 377852721 Dec  7 17:48 ATLAS.root_0
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc     15847 Dec  7 17:48 start_atlas.sh
[2025-12-08 05:45:59] -rw-r--r-- 2 boinc boinc    590132 Dec  7 17:48 input.tar.gz
[2025-12-08 05:45:59] -rw------- 1 boinc boinc 703848445 Dec  8 05:35 HITS.pool.root.1
[2025-12-08 05:45:59] -rw------- 1 boinc boinc   7413760 Dec  8 05:36 result.tar.gz
05:46:01 (917395): run_atlas exited; CPU time 169689.370009
05:46:01 (917395): called boinc_finish(0)

</stderr_txt>
]]>

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