Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:46:11 (1303425): wrapper (7.7.26015): starting
05:46:11 (1303425): wrapper: running run_atlas (--nthreads 4)
[2025-12-08 05:46:11] Arguments: --nthreads 4
[2025-12-08 05:46:11] Threads: 4
[2025-12-08 05:46:11] Checking for CVMFS
[2025-12-08 05:46:11] No cvmfs_config command found, will try listing directly
[2025-12-08 05:46:11] CVMFS is ok
[2025-12-08 05:46:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 05:46:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 05:46:11] Further information can be found at the LHC@home message board.
[2025-12-08 05:46:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 05:46:11] Checking for apptainer binary...
[2025-12-08 05:46:11] which: no apptainer in ((null))
[2025-12-08 05:46:11] apptainer is not installed, using version from CVMFS
[2025-12-08 05:46:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 05:46:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-08 05:46:11] apptainer works
[2025-12-08 05:46:11] Set ATHENA_PROC_NUMBER=4
[2025-12-08 05:46:11] Set ATHENA_CORE_NUMBER=4
[2025-12-08 05:46:11] Starting ATLAS job with PandaID=6900587876
[2025-12-08 05:46:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 20:15:02]  *** The last 200 lines of the pilot log: ***
[2025-12-08 20:15:02] 2025-12-08 19:12:40,910 | INFO     | monitor loop #3749: job 0:6900587876 is in state 'finished'
[2025-12-08 20:15:02] 2025-12-08 19:12:40,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 20:15:02] 2025-12-08 19:12:41,179 | INFO     | time since job start (51977s) is within the limit (172800.0s)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,387 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-08 20:15:02] 2025-12-08 19:12:42,411 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2771.9303750000004
[2025-12-08 20:15:02] 2025-12-08 19:12:42,425 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6900587876/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,426 | INFO     | extracted standard info from prmon json
[2025-12-08 20:15:02] 2025-12-08 19:12:42,427 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 20:15:02] 2025-12-08 19:12:42,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 20:15:02] 2025-12-08 19:12:42,441 | INFO     | fitting pss+swap vs Time
[2025-12-08 20:15:02] 2025-12-08 19:12:42,442 | INFO     | sum of square deviations: 191777039473.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,457 | INFO     | sum of deviations: 524395276558.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,457 | INFO     | mean x: 1765195166.5
[2025-12-08 20:15:02] 2025-12-08 19:12:42,458 | INFO     | mean y: 2316981.1103286385
[2025-12-08 20:15:02] 2025-12-08 19:12:42,458 | INFO     | intersect: -4824433969.156241
[2025-12-08 20:15:02] 2025-12-08 19:12:42,459 | INFO     | chi2: 3.817037809080413
[2025-12-08 20:15:02] 2025-12-08 19:12:42,460 | INFO     | sum of square deviations: 188420455608.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,474 | INFO     | sum of deviations: 700562238338.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,475 | INFO     | mean x: 1765195014.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,475 | INFO     | mean y: 2324976.639905549
[2025-12-08 20:15:02] 2025-12-08 19:12:42,475 | INFO     | intersect: -6560810464.894459
[2025-12-08 20:15:02] 2025-12-08 19:12:42,476 | INFO     | chi2: 1.8004425503407342
[2025-12-08 20:15:02] 2025-12-08 19:12:42,476 | INFO     | current chi2=1.8004425503407342 (change=52.83141953538861 %)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,477 | INFO     | sum of square deviations: 185103267830.5
[2025-12-08 20:15:02] 2025-12-08 19:12:42,491 | INFO     | sum of deviations: 715693009263.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,492 | INFO     | mean x: 1765194861.5
[2025-12-08 20:15:02] 2025-12-08 19:12:42,492 | INFO     | mean y: 2325667.3467933494
[2025-12-08 20:15:02] 2025-12-08 19:12:42,492 | INFO     | intersect: -6822716576.204326
[2025-12-08 20:15:02] 2025-12-08 19:12:42,493 | INFO     | chi2: 1.7081255893158551
[2025-12-08 20:15:02] 2025-12-08 19:12:42,493 | INFO     | current chi2=1.7081255893158551 (change=5.1274594130986335 %)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,494 | INFO     | right removable region: 841
[2025-12-08 20:15:02] 2025-12-08 19:12:42,496 | INFO     | sum of square deviations: 188420455608.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,510 | INFO     | sum of deviations: 379446023515.0001
[2025-12-08 20:15:02] 2025-12-08 19:12:42,511 | INFO     | mean x: 1765195319.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,511 | INFO     | mean y: 2323552.5997638726
[2025-12-08 20:15:02] 2025-12-08 19:12:42,511 | INFO     | intersect: -3552472779.680221
[2025-12-08 20:15:02] 2025-12-08 19:12:42,512 | INFO     | chi2: 2.206198564317663
[2025-12-08 20:15:02] 2025-12-08 19:12:42,512 | INFO     | current chi2=2.206198564317663 (change=42.201291297945716 %)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,513 | INFO     | sum of square deviations: 185103267830.5
[2025-12-08 20:15:02] 2025-12-08 19:12:42,527 | INFO     | sum of deviations: 369638763490.50006
[2025-12-08 20:15:02] 2025-12-08 19:12:42,528 | INFO     | mean x: 1765195471.5
[2025-12-08 20:15:02] 2025-12-08 19:12:42,528 | INFO     | mean y: 2324002.7541567697
[2025-12-08 20:15:02] 2025-12-08 19:12:42,528 | INFO     | intersect: -3522652509.2854567
[2025-12-08 20:15:02] 2025-12-08 19:12:42,529 | INFO     | chi2: 2.204815238150805
[2025-12-08 20:15:02] 2025-12-08 19:12:42,529 | INFO     | current chi2=2.204815238150805 (change=0.06270179798099626 %)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,529 | INFO     | left removable region: 20
[2025-12-08 20:15:02] 2025-12-08 19:12:42,530 | INFO     | sum of square deviations: 171596035970.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,544 | INFO     | sum of deviations: 554620176379.0004
[2025-12-08 20:15:02] 2025-12-08 19:12:42,545 | INFO     | mean x: 1765195441.0
[2025-12-08 20:15:02] 2025-12-08 19:12:42,545 | INFO     | mean y: 2332832.7040194883
[2025-12-08 20:15:02] 2025-12-08 19:12:42,545 | INFO     | intersect: -5703002965.390917
[2025-12-08 20:15:02] 2025-12-08 19:12:42,546 | INFO     | chi2: 0.07465927406917451
[2025-12-08 20:15:02] 2025-12-08 19:12:42,546 | INFO     | current memory leak: 3.23 B/s (using 821 data points, chi2=0.07)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | could have reported an average CPU frequency of 2755 MHz (32 samples)
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | ..............................
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . Timing measurements:
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . get job = 0 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . initial setup = 1 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . payload setup = 6 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . stage-in = 0 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . payload execution = 51941 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . stage-out = 2 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,548 | INFO     | . log creation = 0 s
[2025-12-08 20:15:02] 2025-12-08 19:12:42,549 | INFO     | ..............................
[2025-12-08 20:15:02] 2025-12-08 19:12:42,955 | INFO     | PID=1307616 has CPU usage=17.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,120 | INFO     | 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,120 | INFO     | job summary report
[2025-12-08 20:15:02] 2025-12-08 19:12:43,120 | INFO     | --------------------------------------------------
[2025-12-08 20:15:02] 2025-12-08 19:12:43,120 | INFO     | PanDA job id: 6900587876
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | task id: 47556185
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | errors: (none)
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | pilot state: finished 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | transexitcode: 0
[2025-12-08 20:15:02] 2025-12-08 19:12:43,121 | INFO     | exeerrorcode: 0
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | exeerrordiag: 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | exitcode: 0
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | exitmsg: OK
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | cpuconsumptiontime: 206120 s
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | nevents: 1000
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | neventsw: 0
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | pid: 1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:43,122 | INFO     | pgrp: 1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:43,123 | INFO     | corecount: 4
[2025-12-08 20:15:02] 2025-12-08 19:12:43,123 | INFO     | event service: False
[2025-12-08 20:15:02] 2025-12-08 19:12:43,123 | INFO     | sizes: {0: 2284214, 1: 2284328, 5: 2284618, 11: 2284674, 51950: 2333276, 51951: 2333275, 51953: 2342475, 51956: 2342531, 51962: 2342777}
[2025-12-08 20:15:02] 2025-12-08 19:12:43,123 | INFO     | --------------------------------------------------
[2025-12-08 20:15:02] 2025-12-08 19:12:43,123 | INFO     | 
[2025-12-08 20:15:02] 2025-12-08 19:12:43,124 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-08 20:15:02] 2025-12-08 19:12:43,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,157 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 20:15:02] 2025-12-08 19:12:43,158 | INFO     | job 6900587876 has completed (purged errors)
[2025-12-08 20:15:02] 2025-12-08 19:12:43,158 | INFO     | overall cleanup function is called
[2025-12-08 20:15:02] 2025-12-08 19:12:44,176 | INFO     | --- collectZombieJob: --- 10, [1314606]
[2025-12-08 20:15:02] 2025-12-08 19:12:44,176 | INFO     | zombie collector waiting for pid 1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:44,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 20:15:02] 2025-12-08 19:12:44,176 | INFO     | collected zombie processes
[2025-12-08 20:15:02] 2025-12-08 19:12:44,176 | INFO     | will attempt to kill all subprocesses of pid=1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:44,679 | INFO     | process IDs to be killed: [1314606] (in reverse order)
[2025-12-08 20:15:02] 2025-12-08 19:12:44,783 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 20:15:02] 2025-12-08 19:12:44,784 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 20:15:02] 2025-12-08 19:12:44,797 | INFO     | did not find any defunct processes belonging to 1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:44,810 | INFO     | did not find any defunct processes belonging to 1314606
[2025-12-08 20:15:02] 2025-12-08 19:12:44,811 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 20:15:02] 2025-12-08 19:12:44,812 | INFO     | ready for new job
[2025-12-08 20:15:02] 2025-12-08 19:12:44,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 20:15:02] 2025-12-08 19:12:44,817 | INFO     | ***************************************
[2025-12-08 20:15:02] 2025-12-08 19:12:44,817 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 20:15:02] 2025-12-08 19:12:44,817 | INFO     | ***************************************
[2025-12-08 20:15:02] 2025-12-08 19:12:44,817 | INFO     | 
[2025-12-08 20:15:02] 2025-12-08 19:12:44,821 | INFO     | architecture information:
[2025-12-08 20:15:02] 2025-12-08 19:12:44,822 | INFO     | executing command: cat /etc/os-release
[2025-12-08 20:15:02] 2025-12-08 19:12:44,836 | INFO     | cat /etc/os-release:
[2025-12-08 20:15:02] NAME="CentOS Linux"
[2025-12-08 20:15:02] VERSION="7 (Core)"
[2025-12-08 20:15:02] ID="centos"
[2025-12-08 20:15:02] ID_LIKE="rhel fedora"
[2025-12-08 20:15:02] VERSION_ID="7"
[2025-12-08 20:15:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 20:15:02] ANSI_COLOR="0;31"
[2025-12-08 20:15:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 20:15:02] HOME_URL="https://www.centos.org/"
[2025-12-08 20:15:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 20:15:02] 
[2025-12-08 20:15:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 20:15:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 20:15:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 20:15:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 20:15:02] 
[2025-12-08 20:15:02] 2025-12-08 19:12:44,837 | INFO     | ***************************************
[2025-12-08 20:15:02] 2025-12-08 19:12:45,340 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-08 20:15:02] 2025-12-08 19:12:45,356 | INFO     | sufficient remaining disk space (668917039104 B)
[2025-12-08 20:15:02] 2025-12-08 19:12:45,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 20:15:02] 2025-12-08 19:12:45,357 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 20:15:02] 2025-12-08 19:12:45,357 | INFO     | update_server=False
[2025-12-08 20:15:02] 2025-12-08 19:12:45,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 20:15:02] 2025-12-08 19:12:45,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 20:15:02] 2025-12-08 19:12:45,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 20:15:02] 2025-12-08 19:12:45,358 | INFO     | aborting loop
[2025-12-08 20:15:02] 2025-12-08 19:12:45,596 | INFO     | all payload control threads have been joined
[2025-12-08 20:15:02] 2025-12-08 19:12:45,711 | INFO     | all job control threads have been joined
[2025-12-08 20:15:02] 2025-12-08 19:12:46,250 | INFO     | all data control threads have been joined
[2025-12-08 20:15:02] 2025-12-08 19:12:46,362 | INFO     | [job] retrieve thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,364 | INFO     | [job] job monitor thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,601 | INFO     | [payload] control thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,631 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,669 | INFO     | [job] validate thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,716 | INFO     | [job] control thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,744 | INFO     | [data] copytool_in thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,901 | INFO     | [payload] validate_post thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:46,962 | INFO     | [payload] failed_post thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 20:15:02] 2025-12-08 19:12:47,255 | INFO     | [data] control thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,359 | INFO     | [data] copytool_out thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,429 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,564 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:47,656 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 20:15:02] 2025-12-08 19:12:48,662 | INFO     | [job] queue monitor thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:12:51,070 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 20:15:02] 2025-12-08 19:13:15,521 | INFO     | PID=1307616 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 20:15:02] 2025-12-08 19:13:15,522 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 20:15:02] 2025-12-08 19:13:15,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 20:15:02] 2025-12-08 19:13:15,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 20:15:02] 2025-12-08 19:13:43,994 | INFO     | [monitor] cgroup control has ended
[2025-12-08 20:15:02] 2025-12-08 19:13:45,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22578850600768)>', '<ExcThread(monitor, started 22578613683968)>']
[2025-12-08 20:15:02] 2025-12-08 19:13:46,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 20:15:02] 2025-12-08 19:13:46,658 | INFO     | [monitor] control thread has ended
[2025-12-08 20:15:02] 2025-12-08 19:13:50,803 | INFO     | all workflow threads have been joined
[2025-12-08 20:15:02] 2025-12-08 19:13:50,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 20:15:02] 2025-12-08 19:13:50,804 | INFO     | traces error code: 0
[2025-12-08 20:15:02] 2025-12-08 19:13:50,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 20:15:02] 2025-12-08 19:13:50,957 [wrapper] ==== pilot stdout END ====
[2025-12-08 20:15:02] 2025-12-08 19:13:50,960 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 20:15:02] 2025-12-08 19:13:50,963 [wrapper] pilotpid: 1307616
[2025-12-08 20:15:02] 2025-12-08 19:13:50,966 [wrapper] Pilot exit status: 0
[2025-12-08 20:15:02] 2025-12-08 19:13:50,976 [wrapper] pandaids: 6900587876
[2025-12-08 20:15:02] 2025-12-08 19:13:51,051 [wrapper] cleanup supervisor_pilot 1759412 1307617
[2025-12-08 20:15:02] 2025-12-08 19:13:51,054 [wrapper] Test setup, not cleaning
[2025-12-08 20:15:02] 2025-12-08 19:13:51,057 [wrapper] apfmon messages muted
[2025-12-08 20:15:02] 2025-12-08 19:13:51,060 [wrapper] ==== wrapper stdout END ====
[2025-12-08 20:15:02] 2025-12-08 19:13:51,063 [wrapper] ==== wrapper stderr END ====
[2025-12-08 20:15:02]  *** Error codes and diagnostics ***
[2025-12-08 20:15:02]     "exeErrorCode": 0,
[2025-12-08 20:15:02]     "exeErrorDiag": "",
[2025-12-08 20:15:02]     "pilotErrorCode": 0,
[2025-12-08 20:15:02]     "pilotErrorDiag": "",
[2025-12-08 20:15:02]  *** Listing of results directory ***
[2025-12-08 20:15:02] total 1298536
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-08 20:15:02] -rwx------ 1 boinc boinc     36292 Nov 28 02:02 runpilot2-wrapper.sh
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc      5112 Nov 28 02:05 queuedata.json
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc       100 Dec  8 05:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 20:15:02] -rwxr-xr-x 1 boinc boinc      7986 Dec  8 05:46 run_atlas
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc       105 Dec  8 05:46 job.xml
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc      6638 Dec  8 05:46 init_data.xml
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc 408581764 Dec  8 05:46 EVNT.47483658._004428.pool.root.1
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc     15847 Dec  8 05:46 start_atlas.sh
[2025-12-08 20:15:02] drwxrwx--x 2 boinc boinc      4096 Dec  8 05:46 shared
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc    590110 Dec  8 05:46 input.tar.gz
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc         0 Dec  8 05:46 boinc_lockfile
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc      2788 Dec  8 05:46 pandaJob.out
[2025-12-08 20:15:02] -rw------- 1 boinc boinc    981501 Dec  8 05:46 agis_schedconf.cvmfs.json
[2025-12-08 20:15:02] drwx------ 5 boinc boinc      4096 Dec  8 05:46 pilot3
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc       530 Dec  8 20:04 boinc_task_state.xml
[2025-12-08 20:15:02] -rw------- 1 boinc boinc 899814487 Dec  8 20:11 HITS.47556185._001917.pool.root.1
[2025-12-08 20:15:02] -rw------- 1 boinc boinc      1041 Dec  8 20:12 memory_monitor_summary.json
[2025-12-08 20:15:02] -rw------- 1 boinc boinc   1516240 Dec  8 20:12 agis_ddmendpoints.agis.ALL.json
[2025-12-08 20:15:02] -rw------- 1 boinc boinc   1605811 Dec  8 20:12 log.47556185._001917.job.log.tgz.1
[2025-12-08 20:15:02] -rw------- 1 boinc boinc      8625 Dec  8 20:12 heartbeat.json
[2025-12-08 20:15:02] -rw------- 1 boinc boinc        95 Dec  8 20:13 pilot_heartbeat.json
[2025-12-08 20:15:02] -rw------- 1 boinc boinc      4758 Dec  8 20:13 pilotlog.txt
[2025-12-08 20:15:02] -rw------- 1 boinc boinc   7090556 Dec  8 20:13 log.47556185._001917.job.log.1
[2025-12-08 20:15:02] -rw------- 1 boinc boinc       353 Dec  8 20:13 output.list
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc       620 Dec  8 20:13 runtime_log
[2025-12-08 20:15:02] -rw------- 1 boinc boinc   8714240 Dec  8 20:13 result.tar.gz
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc      9206 Dec  8 20:13 runtime_log.err
[2025-12-08 20:15:02] -rw------- 1 boinc boinc       669 Dec  8 20:13 UOTNDmX31i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnKOKDmPgdDon.diag
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc        28 Dec  8 20:14 wrapper_checkpoint.txt
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc      8192 Dec  8 20:15 boinc_mmap_file
[2025-12-08 20:15:02] -rw-r--r-- 1 boinc boinc     21203 Dec  8 20:15 stderr.txt
[2025-12-08 20:15:02] HITS file was successfully produced:
[2025-12-08 20:15:02] -rw------- 1 boinc boinc 899814487 Dec  8 20:11 shared/HITS.pool.root.1
[2025-12-08 20:15:02]  *** Contents of shared directory: ***
[2025-12-08 20:15:02] total 1286852
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc 408581764 Dec  8 05:46 ATLAS.root_0
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc     15847 Dec  8 05:46 start_atlas.sh
[2025-12-08 20:15:02] -rw-r--r-- 2 boinc boinc    590110 Dec  8 05:46 input.tar.gz
[2025-12-08 20:15:02] -rw------- 1 boinc boinc 899814487 Dec  8 20:11 HITS.pool.root.1
[2025-12-08 20:15:02] -rw------- 1 boinc boinc   8714240 Dec  8 20:13 result.tar.gz
20:15:04 (1303425): run_atlas exited; CPU time 208143.718664
20:15:04 (1303425): called boinc_finish(0)

</stderr_txt>
]]>

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