Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:01:54 (4463): wrapper (7.7.26015): starting
13:01:54 (4463): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 13:01:54] Arguments: --nthreads 8
[2025-12-04 13:01:54] Threads: 8
[2025-12-04 13:01:54] Checking for CVMFS
[2025-12-04 13:01:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 13:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 13:01:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 13:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 13:01:56] 2.11.2.0 30898 296690 138736 153635 1 230 24588486 25165825 1351 130560 12 133393064 99.873 82518447 2936 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-04 13:01:56] CVMFS is ok
[2025-12-04 13:01:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 13:01:56] Checking for apptainer binary...
[2025-12-04 13:01:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 13:01:56] Running /usr/bin/apptainer --version
[2025-12-04 13:01:56] apptainer version 1.3.2-1.el7
[2025-12-04 13:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 13:01:58] cg-vwn285.simple-grid.lan
[2025-12-04 13:01:58] apptainer works
[2025-12-04 13:01:58] Set ATHENA_PROC_NUMBER=8
[2025-12-04 13:01:58] Set ATHENA_CORE_NUMBER=8
[2025-12-04 13:01:58] Starting ATLAS job with PandaID=6914377145
[2025-12-04 13:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 17:06:27]  *** The last 200 lines of the pilot log: ***
[2025-12-04 17:06:27] 2025-12-04 16:05:38,082 | INFO     | extracted standard info from prmon json
[2025-12-04 17:06:27] 2025-12-04 16:05:38,082 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 17:06:27] 2025-12-04 16:05:38,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 17:06:27] 2025-12-04 16:05:38,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-04 17:06:27] 2025-12-04 16:05:38,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-04 17:06:27] 2025-12-04 16:05:38,088 | INFO     | fitting pss+swap vs Time
[2025-12-04 17:06:27] 2025-12-04 16:05:38,089 | INFO     | sum of square deviations: 4024149870.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,090 | INFO     | sum of deviations: 28561695171.000004
[2025-12-04 17:06:27] 2025-12-04 16:05:38,090 | INFO     | mean x: 1764857163.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,091 | INFO     | mean y: 2472259.578723404
[2025-12-04 17:06:27] 2025-12-04 16:05:38,091 | INFO     | intersect: -12523729283.198774
[2025-12-04 17:06:27] 2025-12-04 16:05:38,091 | INFO     | chi2: 2.483485890176785
[2025-12-04 17:06:27] 2025-12-04 16:05:38,092 | INFO     | sum of square deviations: 3772712597.5
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | sum of deviations: 43360940154.50001
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | mean x: 1764857010.5
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | mean y: 2481072.1173913046
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | intersect: -20281560512.245647
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | chi2: 1.708262757051493
[2025-12-04 17:06:27] 2025-12-04 16:05:38,094 | INFO     | current chi2=1.708262757051493 (change=31.215121301539124 %)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,095 | INFO     | sum of square deviations: 3531973200.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | sum of deviations: 42282631533.99999
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | mean x: 1764856858.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | mean y: 2480388.9644444445
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | intersect: -21125310795.03065
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | chi2: 1.7089979301419833
[2025-12-04 17:06:27] 2025-12-04 16:05:38,097 | INFO     | current chi2=1.7089979301419833 (change=-0.04303630032649331 %)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,098 | INFO     | right removable region: 224
[2025-12-04 17:06:27] 2025-12-04 16:05:38,098 | INFO     | sum of square deviations: 3772712597.5
[2025-12-04 17:06:27] 2025-12-04 16:05:38,100 | INFO     | sum of deviations: -12492918584.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,100 | INFO     | mean x: 1764857315.5
[2025-12-04 17:06:27] 2025-12-04 16:05:38,100 | INFO     | mean y: 2496952.6
[2025-12-04 17:06:27] 2025-12-04 16:05:38,101 | INFO     | intersect: 5846625861.207728
[2025-12-04 17:06:27] 2025-12-04 16:05:38,101 | INFO     | chi2: 0.8316307147187773
[2025-12-04 17:06:27] 2025-12-04 16:05:38,101 | INFO     | current chi2=0.8316307147187773 (change=66.51357199136018 %)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,101 | INFO     | sum of square deviations: 3531973200.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,103 | INFO     | sum of deviations: -17179227114.000002
[2025-12-04 17:06:27] 2025-12-04 16:05:38,103 | INFO     | mean x: 1764857468.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,103 | INFO     | mean y: 2499932.111111111
[2025-12-04 17:06:27] 2025-12-04 16:05:38,104 | INFO     | intersect: 8586621483.942532
[2025-12-04 17:06:27] 2025-12-04 16:05:38,104 | INFO     | chi2: 0.8028720179708767
[2025-12-04 17:06:27] 2025-12-04 16:05:38,104 | INFO     | current chi2=0.8028720179708767 (change=3.4581090186917325 %)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,104 | INFO     | left removable region: 20
[2025-12-04 17:06:27] 2025-12-04 16:05:38,104 | INFO     | sum of square deviations: 2632440055.0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,106 | INFO     | sum of deviations: -3650057396.499998
[2025-12-04 17:06:27] 2025-12-04 16:05:38,106 | INFO     | mean x: 1764857437.5
[2025-12-04 17:06:27] 2025-12-04 16:05:38,106 | INFO     | mean y: 2510837.3970588236
[2025-12-04 17:06:27] 2025-12-04 16:05:38,106 | INFO     | intersect: 2449605855.298581
[2025-12-04 17:06:27] 2025-12-04 16:05:38,107 | INFO     | chi2: 0.005721221153443137
[2025-12-04 17:06:27] 2025-12-04 16:05:38,107 | INFO     | current memory leak: -1.39 B/s (using 204 data points, chi2=0.01)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | ..............................
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . Timing measurements:
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . get job = 0 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . initial setup = 4 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . payload setup = 71 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . stage-in = 0 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . payload execution = 14410 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . stage-out = 1 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,108 | INFO     | . log creation = 0 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,109 | INFO     | ..............................
[2025-12-04 17:06:27] 2025-12-04 16:05:38,221 | INFO     | 
[2025-12-04 17:06:27] 2025-12-04 16:05:38,221 | INFO     | job summary report
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | --------------------------------------------------
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | PanDA job id: 6914377145
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | task id: 47751372
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | errors: (none)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | pilot state: finished 
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | transexitcode: 0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | exeerrorcode: 0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | exeerrordiag: 
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | exitcode: 0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | exitmsg: OK
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | cpuconsumptiontime: 52186 s
[2025-12-04 17:06:27] 2025-12-04 16:05:38,222 | INFO     | nevents: 400
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | neventsw: 0
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | pid: 15816
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | pgrp: 15816
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | corecount: 8
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | event service: False
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | sizes: {0: 2283585, 1: 2283784, 12: 2283784, 19: 2284074, 23: 2284102, 14483: 2314370, 14486: 2323370, 14489: 2323426, 14498: 2323620}
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | --------------------------------------------------
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | 
[2025-12-04 17:06:27] 2025-12-04 16:05:38,223 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,267 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 17:06:27] 2025-12-04 16:05:38,268 | INFO     | job 6914377145 has completed (purged errors)
[2025-12-04 17:06:27] 2025-12-04 16:05:38,268 | INFO     | overall cleanup function is called
[2025-12-04 17:06:27] 2025-12-04 16:05:39,276 | INFO     | --- collectZombieJob: --- 10, [15816]
[2025-12-04 17:06:27] 2025-12-04 16:05:39,276 | INFO     | zombie collector waiting for pid 15816
[2025-12-04 17:06:27] 2025-12-04 16:05:39,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 17:06:27] 2025-12-04 16:05:39,277 | INFO     | collected zombie processes
[2025-12-04 17:06:27] 2025-12-04 16:05:39,277 | INFO     | will attempt to kill all subprocesses of pid=15816
[2025-12-04 17:06:27] 2025-12-04 16:05:39,375 | INFO     | process IDs to be killed: [15816] (in reverse order)
[2025-12-04 17:06:27] 2025-12-04 16:05:39,483 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 17:06:27] 2025-12-04 16:05:39,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 17:06:27] 2025-12-04 16:05:39,486 | INFO     | did not find any defunct processes belonging to 15816
[2025-12-04 17:06:27] 2025-12-04 16:05:39,489 | INFO     | did not find any defunct processes belonging to 15816
[2025-12-04 17:06:27] 2025-12-04 16:05:39,504 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 17:06:27] 2025-12-04 16:05:39,505 | INFO     | ready for new job
[2025-12-04 17:06:27] 2025-12-04 16:05:39,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 17:06:27] 2025-12-04 16:05:39,507 | INFO     | ***************************************
[2025-12-04 17:06:27] 2025-12-04 16:05:39,507 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 17:06:27] 2025-12-04 16:05:39,507 | INFO     | ***************************************
[2025-12-04 17:06:27] 2025-12-04 16:05:39,507 | INFO     | 
[2025-12-04 17:06:27] 2025-12-04 16:05:39,508 | INFO     | pilot is running in a VM
[2025-12-04 17:06:27] 2025-12-04 16:05:39,508 | INFO     | architecture information:
[2025-12-04 17:06:27] 2025-12-04 16:05:39,508 | INFO     | executing command: cat /etc/os-release
[2025-12-04 17:06:27] 2025-12-04 16:05:39,561 | INFO     | cat /etc/os-release:
[2025-12-04 17:06:27] NAME="CentOS Linux"
[2025-12-04 17:06:27] VERSION="7 (Core)"
[2025-12-04 17:06:27] ID="centos"
[2025-12-04 17:06:27] ID_LIKE="rhel fedora"
[2025-12-04 17:06:27] VERSION_ID="7"
[2025-12-04 17:06:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 17:06:27] ANSI_COLOR="0;31"
[2025-12-04 17:06:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 17:06:27] HOME_URL="https://www.centos.org/"
[2025-12-04 17:06:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 17:06:27] 
[2025-12-04 17:06:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 17:06:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 17:06:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 17:06:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 17:06:27] 
[2025-12-04 17:06:27] 2025-12-04 16:05:39,561 | INFO     | ***************************************
[2025-12-04 17:06:27] 2025-12-04 16:05:40,064 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-04 17:06:27] 2025-12-04 16:05:40,092 | INFO     | sufficient remaining disk space (496762880000 B)
[2025-12-04 17:06:27] 2025-12-04 16:05:40,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 17:06:27] 2025-12-04 16:05:40,093 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 17:06:27] 2025-12-04 16:05:40,093 | INFO     | update_server=False
[2025-12-04 17:06:27] 2025-12-04 16:05:40,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 17:06:27] 2025-12-04 16:05:40,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 17:06:27] 2025-12-04 16:05:40,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 17:06:27] 2025-12-04 16:05:40,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 17:06:27] 2025-12-04 16:05:40,391 | INFO     | all data control threads have been joined
[2025-12-04 17:06:27] 2025-12-04 16:05:40,544 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-04 17:06:27] 2025-12-04 16:05:40,544 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-04 17:06:27] 2025-12-04 16:05:40,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 17:06:27] 2025-12-04 16:05:40,545 | INFO     | will abort loop
[2025-12-04 17:06:27] 2025-12-04 16:05:41,099 | INFO     | [job] retrieve thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,101 | INFO     | [job] queue monitor thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,278 | INFO     | all payload control threads have been joined
[2025-12-04 17:06:27] 2025-12-04 16:05:41,392 | INFO     | [data] copytool_in thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,396 | INFO     | [data] control thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,549 | INFO     | [job] job monitor thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,632 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:41,639 | INFO     | all job control threads have been joined
[2025-12-04 17:06:27] 2025-12-04 16:05:42,042 | INFO     | [payload] validate_post thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,101 | INFO     | [data] copytool_out thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,141 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,235 | INFO     | [payload] failed_post thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,245 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,284 | INFO     | [payload] control thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,446 | INFO     | [job] validate thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:42,645 | INFO     | [job] control thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:44,101 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:05:50,618 | INFO     | job.realtimelogging is not enabled
[2025-12-04 17:06:27] 2025-12-04 16:05:51,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 17:06:27] 2025-12-04 16:06:10,516 | INFO     | PID=8711 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-04 17:06:27] 2025-12-04 16:06:10,517 | INFO     | .. there are 9 such processes running
[2025-12-04 17:06:27] 2025-12-04 16:06:10,517 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 17:06:27] 2025-12-04 16:06:10,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 17:06:27] 2025-12-04 16:06:10,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 17:06:27] 2025-12-04 16:06:16,703 | INFO     | [monitor] cgroup control has ended
[2025-12-04 17:06:27] 2025-12-04 16:06:17,865 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613411116864)>', '<ExcThread(monitor, started 140612976232192)>']
[2025-12-04 17:06:27] 2025-12-04 16:06:18,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 17:06:27] 2025-12-04 16:06:18,564 | INFO     | [monitor] control thread has ended
[2025-12-04 17:06:27] 2025-12-04 16:06:22,891 | INFO     | all workflow threads have been joined
[2025-12-04 17:06:27] 2025-12-04 16:06:22,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 17:06:27] 2025-12-04 16:06:22,892 | INFO     | traces error code: 0
[2025-12-04 17:06:27] 2025-12-04 16:06:22,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 17:06:27] 2025-12-04 16:06:23,183 [wrapper] ==== pilot stdout END ====
[2025-12-04 17:06:27] 2025-12-04 16:06:23,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 17:06:27] 2025-12-04 16:06:23,415 [wrapper] pilotpid: 8711
[2025-12-04 17:06:27] 2025-12-04 16:06:23,501 [wrapper] Pilot exit status: 0
[2025-12-04 17:06:27] 2025-12-04 16:06:23,970 [wrapper] pandaids: 6914377145
[2025-12-04 17:06:27] 2025-12-04 16:06:24,830 [wrapper] cleanup supervisor_pilot 16551 8712
[2025-12-04 17:06:27] 2025-12-04 16:06:24,874 [wrapper] Test setup, not cleaning
[2025-12-04 17:06:27] 2025-12-04 16:06:24,939 [wrapper] apfmon messages muted
[2025-12-04 17:06:27] 2025-12-04 16:06:25,022 [wrapper] ==== wrapper stdout END ====
[2025-12-04 17:06:27] 2025-12-04 16:06:25,101 [wrapper] ==== wrapper stderr END ====
[2025-12-04 17:06:27]  *** Error codes and diagnostics ***
[2025-12-04 17:06:27]     "exeErrorCode": 0,
[2025-12-04 17:06:27]     "exeErrorDiag": "",
[2025-12-04 17:06:27]     "pilotErrorCode": 0,
[2025-12-04 17:06:27]     "pilotErrorDiag": "",
[2025-12-04 17:06:27]  *** Listing of results directory ***
[2025-12-04 17:06:27] total 370712
[2025-12-04 17:06:27] -rwx------. 1 boinc boinc     36292 Dec  4 09:08 runpilot2-wrapper.sh
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc      5112 Dec  4 09:08 queuedata.json
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc    579449 Dec  4 09:08 pilot3.tar.gz
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc       100 Dec  4 13:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 17:06:27] -rwxr-xr-x. 1 boinc boinc      7986 Dec  4 13:01 run_atlas
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc       105 Dec  4 13:01 job.xml
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc 196773550 Dec  4 13:01 EVNT.47751370._000007.pool.root.1
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc     15847 Dec  4 13:01 start_atlas.sh
[2025-12-04 17:06:27] drwxrwx--x. 2 boinc boinc        68 Dec  4 13:01 shared
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc    589919 Dec  4 13:01 input.tar.gz
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc      6391 Dec  4 13:01 init_data.xml
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc         0 Dec  4 13:01 boinc_lockfile
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc      2474 Dec  4 13:01 pandaJob.out
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc    985572 Dec  4 13:02 agis_schedconf.cvmfs.json
[2025-12-04 17:06:27] drwx------. 5 boinc boinc      4096 Dec  4 13:02 pilot3
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc 174081696 Dec  4 17:04 HITS.47751372._000159.pool.root.1
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc       531 Dec  4 17:05 boinc_task_state.xml
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc      1014 Dec  4 17:05 memory_monitor_summary.json
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc   1516240 Dec  4 17:05 agis_ddmendpoints.agis.ALL.json
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc    454726 Dec  4 17:05 log.47751372._000159.job.log.tgz.1
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc        95 Dec  4 17:05 pilot_heartbeat.json
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc      7766 Dec  4 17:05 heartbeat.json
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc      8192 Dec  4 17:06 boinc_mmap_file
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc        28 Dec  4 17:06 wrapper_checkpoint.txt
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc      5142 Dec  4 17:06 pilotlog.txt
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc   1970177 Dec  4 17:06 log.47751372._000159.job.log.1
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc       357 Dec  4 17:06 output.list
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc       620 Dec  4 17:06 runtime_log
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc   2447360 Dec  4 17:06 result.tar.gz
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc      8833 Dec  4 17:06 runtime_log.err
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc       657 Dec  4 17:06 R8TLDmwYJl8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1PMKDm00a1Mo.diag
[2025-12-04 17:06:27] -rw-r--r--. 1 boinc boinc     20794 Dec  4 17:06 stderr.txt
[2025-12-04 17:06:27] HITS file was successfully produced:
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc 174081696 Dec  4 17:04 shared/HITS.pool.root.1
[2025-12-04 17:06:27]  *** Contents of shared directory: ***
[2025-12-04 17:06:27] total 365156
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc 196773550 Dec  4 13:01 ATLAS.root_0
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc     15847 Dec  4 13:01 start_atlas.sh
[2025-12-04 17:06:27] -rw-r--r--. 2 boinc boinc    589919 Dec  4 13:01 input.tar.gz
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc 174081696 Dec  4 17:04 HITS.pool.root.1
[2025-12-04 17:06:27] -rw-------. 1 boinc boinc   2447360 Dec  4 17:06 result.tar.gz
17:06:28 (4463): run_atlas exited; CPU time 52359.903273
17:06:28 (4463): called boinc_finish(0)

</stderr_txt>
]]>

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