Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:46:01 (3934168): wrapper (7.7.26015): starting
18:46:01 (3934168): wrapper: running run_atlas (--nthreads 3)
[2025-12-05 18:46:01] Arguments: --nthreads 3
[2025-12-05 18:46:01] Threads: 3
[2025-12-05 18:46:01] Checking for CVMFS
[2025-12-05 18:46:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 18:46:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 18:46:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 18:46:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 18:46:02] 2.9.2.0 2507813 10204 94752 153659 3 81 18874359 36864001 0 130560 0 3830310 99.984 332299 702 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 18:46:02] CVMFS is ok
[2025-12-05 18:46:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 18:46:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 18:46:02] Further information can be found at the LHC@home message board.
[2025-12-05 18:46:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 18:46:02] Checking for apptainer binary...
[2025-12-05 18:46:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 18:46:02] Running /usr/bin/apptainer --version
[2025-12-05 18:46:02] apptainer version 1.4.1-1.1
[2025-12-05 18:46:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 18:46:02] magicA246a
[2025-12-05 18:46:02] apptainer works
[2025-12-05 18:46:02] Set ATHENA_PROC_NUMBER=3
[2025-12-05 18:46:02] Set ATHENA_CORE_NUMBER=3
[2025-12-05 18:46:02] Starting ATLAS job with PandaID=6895334123
[2025-12-05 18:46:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 02:41:50]  *** The last 200 lines of the pilot log: ***
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 02:41:50] 2025-12-06 01:41:18,308 | INFO     | job 6895334123 has completed (purged errors)
[2025-12-06 02:41:50] 2025-12-06 01:41:18,308 | INFO     | overall cleanup function is called
[2025-12-06 02:41:50] 2025-12-06 01:41:19,316 | INFO     | --- collectZombieJob: --- 10, [3944346]
[2025-12-06 02:41:50] 2025-12-06 01:41:19,316 | INFO     | zombie collector waiting for pid 3944346
[2025-12-06 02:41:50] 2025-12-06 01:41:19,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 02:41:50] 2025-12-06 01:41:19,316 | INFO     | collected zombie processes
[2025-12-06 02:41:50] 2025-12-06 01:41:19,316 | INFO     | will attempt to kill all subprocesses of pid=3944346
[2025-12-06 02:41:50] 2025-12-06 01:41:19,362 | INFO     | process IDs to be killed: [3944346] (in reverse order)
[2025-12-06 02:41:50] 2025-12-06 01:41:19,387 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 02:41:50] 2025-12-06 01:41:19,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 02:41:50] 2025-12-06 01:41:19,388 | INFO     | did not find any defunct processes belonging to 3944346
[2025-12-06 02:41:50] 2025-12-06 01:41:19,389 | INFO     | did not find any defunct processes belonging to 3944346
[2025-12-06 02:41:50] 2025-12-06 01:41:19,390 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-06 02:41:50] 2025-12-06 01:41:19,390 | INFO     | ready for new job
[2025-12-06 02:41:50] 2025-12-06 01:41:19,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 02:41:50] 2025-12-06 01:41:19,391 | INFO     | ***************************************
[2025-12-06 02:41:50] 2025-12-06 01:41:19,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-06 02:41:50] 2025-12-06 01:41:19,391 | INFO     | ***************************************
[2025-12-06 02:41:50] 2025-12-06 01:41:19,391 | INFO     | 
[2025-12-06 02:41:50] 2025-12-06 01:41:19,392 | INFO     | architecture information:
[2025-12-06 02:41:50] 2025-12-06 01:41:19,392 | INFO     | executing command: cat /etc/os-release
[2025-12-06 02:41:50] 2025-12-06 01:41:19,400 | INFO     | cat /etc/os-release:
[2025-12-06 02:41:50] NAME="CentOS Linux"
[2025-12-06 02:41:50] VERSION="7 (Core)"
[2025-12-06 02:41:50] ID="centos"
[2025-12-06 02:41:50] ID_LIKE="rhel fedora"
[2025-12-06 02:41:50] VERSION_ID="7"
[2025-12-06 02:41:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 02:41:50] ANSI_COLOR="0;31"
[2025-12-06 02:41:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 02:41:50] HOME_URL="https://www.centos.org/"
[2025-12-06 02:41:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 02:41:50] 
[2025-12-06 02:41:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 02:41:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 02:41:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 02:41:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 02:41:50] 
[2025-12-06 02:41:50] 2025-12-06 01:41:19,400 | INFO     | ***************************************
[2025-12-06 02:41:50] 2025-12-06 01:41:19,904 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | INFO     | sufficient remaining disk space (286339891200 B)
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | INFO     | update_server=False
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 02:41:50] 2025-12-06 01:41:19,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 02:41:50] 2025-12-06 01:41:20,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 02:41:50] 2025-12-06 01:41:20,187 | INFO     | aborting loop
[2025-12-06 02:41:50] 2025-12-06 01:41:20,227 | INFO     | all data control threads have been joined
[2025-12-06 02:41:50] 2025-12-06 01:41:20,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 02:41:50] 2025-12-06 01:41:20,918 | INFO     | [job] retrieve thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:20,923 | INFO     | [job] queue monitor thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,162 | INFO     | all payload control threads have been joined
[2025-12-06 02:41:50] 2025-12-06 01:41:21,188 | INFO     | [job] job monitor thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,231 | INFO     | [data] control thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,335 | INFO     | all job control threads have been joined
[2025-12-06 02:41:50] 2025-12-06 01:41:21,346 | INFO     | [data] copytool_in thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,608 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,756 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,764 | INFO     | [job] validate thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:21,819 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:22,168 | INFO     | [payload] control thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:22,235 | INFO     | [payload] validate_post thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:22,340 | INFO     | [job] control thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:22,449 | INFO     | [payload] failed_post thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:22,900 | INFO     | [data] copytool_out thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:23,924 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:30,355 | INFO     | job.realtimelogging is not enabled
[2025-12-06 02:41:50] 2025-12-06 01:41:31,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 02:41:50] 2025-12-06 01:41:43,597 | INFO     | [monitor] cgroup control has ended
[2025-12-06 02:41:50] 2025-12-06 01:41:45,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475417540416)>', '<ExcThread(monitor, started 140474924906240)>']
[2025-12-06 02:41:50] 2025-12-06 01:41:50,387 | INFO     | all workflow threads have been joined
[2025-12-06 02:41:50] 2025-12-06 01:41:50,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 02:41:50] 2025-12-06 01:41:50,387 | INFO     | traces error code: 0
[2025-12-06 02:41:50] 2025-12-06 01:41:50,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | INFO     | PID=3937895 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 02:41:50] 2025-12-06 01:41:50,591 | INFO     | [monitor] control thread has ended
[2025-12-06 02:41:50] 2025-12-06 01:41:50,640 [wrapper] ==== pilot stdout END ====
[2025-12-06 02:41:50] 2025-12-06 01:41:50,643 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 02:41:50] 2025-12-06 01:41:50,645 [wrapper] pilotpid: 3937895
[2025-12-06 02:41:50] 2025-12-06 01:41:50,647 [wrapper] Pilot exit status: 0
[2025-12-06 02:41:50] 2025-12-06 01:41:50,654 [wrapper] pandaids: 6895334123
[2025-12-06 02:41:50] 2025-12-06 01:41:50,671 [wrapper] cleanup supervisor_pilot 3997352 3937896
[2025-12-06 02:41:50] 2025-12-06 01:41:50,674 [wrapper] Test setup, not cleaning
[2025-12-06 02:41:50] 2025-12-06 01:41:50,676 [wrapper] apfmon messages muted
[2025-12-06 02:41:50] 2025-12-06 01:41:50,678 [wrapper] ==== wrapper stdout END ====
[2025-12-06 02:41:50] 2025-12-06 01:41:50,680 [wrapper] ==== wrapper stderr END ====
[2025-12-06 02:41:50]  *** Error codes and diagnostics ***
[2025-12-06 02:41:50]     "exeErrorCode": 0,
[2025-12-06 02:41:50]     "exeErrorDiag": "",
[2025-12-06 02:41:50]     "pilotErrorCode": 0,
[2025-12-06 02:41:50]     "pilotErrorDiag": "",
[2025-12-06 02:41:50]  *** Listing of results directory ***
[2025-12-06 02:41:50] total 1318008
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:36 pilot3.tar.gz
[2025-12-06 02:41:50] -rwx------ 1 boinc boinc     36292 Nov 22 03:41 runpilot2-wrapper.sh
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc      5112 Nov 22 03:41 queuedata.json
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc       100 Dec  5 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 02:41:50] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 18:46 run_atlas
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc       105 Dec  5 18:46 job.xml
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc 410970329 Dec  5 18:46 EVNT.47483658._000226.pool.root.1
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc    590093 Dec  5 18:46 input.tar.gz
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc     15847 Dec  5 18:46 start_atlas.sh
[2025-12-06 02:41:50] drwxrwx--x 2 boinc boinc      4096 Dec  5 18:46 shared
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc         0 Dec  5 18:46 boinc_setup_complete
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc      6448 Dec  5 18:46 init_data.xml
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc         0 Dec  5 18:46 boinc_lockfile
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc      2785 Dec  5 18:46 pandaJob.out
[2025-12-06 02:41:50] -rw------- 1 boinc boinc    985880 Dec  5 18:46 agis_schedconf.cvmfs.json
[2025-12-06 02:41:50] drwx------ 5 boinc boinc      4096 Dec  5 18:46 pilot3
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc       532 Dec  6 02:37 boinc_task_state.xml
[2025-12-06 02:41:50] -rw------- 1 boinc boinc 924414298 Dec  6 02:40 HITS.47556137._002223.pool.root.1
[2025-12-06 02:41:50] -rw------- 1 boinc boinc      1024 Dec  6 02:41 memory_monitor_summary.json
[2025-12-06 02:41:50] -rw------- 1 boinc boinc   1516240 Dec  6 02:41 agis_ddmendpoints.agis.ALL.json
[2025-12-06 02:41:50] -rw------- 1 boinc boinc   1165066 Dec  6 02:41 log.47556137._002223.job.log.tgz.1
[2025-12-06 02:41:50] -rw------- 1 boinc boinc      8563 Dec  6 02:41 heartbeat.json
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc      8192 Dec  6 02:41 boinc_mmap_file
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc        28 Dec  6 02:41 wrapper_checkpoint.txt
[2025-12-06 02:41:50] -rw------- 1 boinc boinc        95 Dec  6 02:41 pilot_heartbeat.json
[2025-12-06 02:41:50] -rw------- 1 boinc boinc       747 Dec  6 02:41 pilotlog.txt
[2025-12-06 02:41:50] -rw------- 1 boinc boinc   4013288 Dec  6 02:41 log.47556137._002223.job.log.1
[2025-12-06 02:41:50] -rw------- 1 boinc boinc       353 Dec  6 02:41 output.list
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc       620 Dec  6 02:41 runtime_log
[2025-12-06 02:41:50] -rw------- 1 boinc boinc   5201920 Dec  6 02:41 result.tar.gz
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc      8918 Dec  6 02:41 runtime_log.err
[2025-12-06 02:41:50] -rw------- 1 boinc boinc       669 Dec  6 02:41 eekLDm8jsg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvuHKDmyBhvEm.diag
[2025-12-06 02:41:50] -rw-r--r-- 1 boinc boinc     12150 Dec  6 02:41 stderr.txt
[2025-12-06 02:41:50] HITS file was successfully produced:
[2025-12-06 02:41:50] -rw------- 1 boinc boinc 924414298 Dec  6 02:40 shared/HITS.pool.root.1
[2025-12-06 02:41:50]  *** Contents of shared directory: ***
[2025-12-06 02:41:50] total 1309776
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc 410970329 Dec  5 18:46 ATLAS.root_0
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc    590093 Dec  5 18:46 input.tar.gz
[2025-12-06 02:41:50] -rw-r--r-- 2 boinc boinc     15847 Dec  5 18:46 start_atlas.sh
[2025-12-06 02:41:50] -rw------- 1 boinc boinc 924414298 Dec  6 02:40 HITS.pool.root.1
[2025-12-06 02:41:50] -rw------- 1 boinc boinc   5201920 Dec  6 02:41 result.tar.gz
02:41:52 (3934168): run_atlas exited; CPU time 84144.224310
02:41:52 (3934168): called boinc_finish(0)

</stderr_txt>
]]>

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