Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:55:54 (794): wrapper (7.7.26015): starting
05:55:54 (794): wrapper: running run_atlas (--nthreads 8)
[2025-12-05 05:55:54] Arguments: --nthreads 8
[2025-12-05 05:55:54] Threads: 8
[2025-12-05 05:55:54] Checking for CVMFS
[2025-12-05 05:55:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 05:55:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 05:55:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 05:55:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 05:55:57] 2.11.2.0 28366 184683 141392 153639 0 309 18561500 25165824 1357 130560 12 60117952 99.891 31206898 2033 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-05 05:55:57] CVMFS is ok
[2025-12-05 05:55:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 05:55:57] Checking for apptainer binary...
[2025-12-05 05:55:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 05:55:57] Running /usr/bin/apptainer --version
[2025-12-05 05:55:57] apptainer version 1.3.2-1.el7
[2025-12-05 05:55:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 05:56:12] cg-vwn288.simple-grid.lan
[2025-12-05 05:56:12] apptainer works
[2025-12-05 05:56:12] Set ATHENA_PROC_NUMBER=8
[2025-12-05 05:56:12] Set ATHENA_CORE_NUMBER=8
[2025-12-05 05:56:12] Starting ATLAS job with PandaID=6893857684
[2025-12-05 05:56:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 03:08:15]  *** The last 200 lines of the pilot log: ***
[2025-12-06 03:08:16] 2025-12-06 02:07:23,171 | INFO     | .. there are 9 such processes running
[2025-12-06 03:08:16] 2025-12-06 02:07:24,172 | INFO     | time since job start (76050s) is within the limit (172800.0s)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,658 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-06 03:08:16] 2025-12-06 02:07:24,659 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-06 03:08:16] 2025-12-06 02:07:24,661 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893857684/memory_monitor_summary.json (trf name=prmon)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,661 | INFO     | extracted standard info from prmon json
[2025-12-06 03:08:16] 2025-12-06 02:07:24,661 | INFO     | extracted standard memory fields from prmon json
[2025-12-06 03:08:16] 2025-12-06 02:07:24,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-06 03:08:16] 2025-12-06 02:07:24,682 | INFO     | fitting pss+swap vs Time
[2025-12-06 03:08:16] 2025-12-06 02:07:24,684 | INFO     | sum of square deviations: 586930713286.7694
[2025-12-06 03:08:16] 2025-12-06 02:07:24,734 | INFO     | sum of deviations: 2153984604229.872
[2025-12-06 03:08:16] 2025-12-06 02:07:24,734 | INFO     | mean x: 1764948995.0994341
[2025-12-06 03:08:16] 2025-12-06 02:07:24,734 | INFO     | mean y: 2885692.5375909456
[2025-12-06 03:08:16] 2025-12-06 02:07:24,734 | INFO     | intersect: -6474323416.875124
[2025-12-06 03:08:16] 2025-12-06 02:07:24,735 | INFO     | chi2: 11.950803651018223
[2025-12-06 03:08:16] 2025-12-06 02:07:24,737 | INFO     | sum of square deviations: 579842660290.7009
[2025-12-06 03:08:16] 2025-12-06 02:07:24,783 | INFO     | sum of deviations: 2596528307283.1963
[2025-12-06 03:08:16] 2025-12-06 02:07:24,784 | INFO     | mean x: 1764948842.6038961
[2025-12-06 03:08:16] 2025-12-06 02:07:24,784 | INFO     | mean y: 2895213.666396104
[2025-12-06 03:08:16] 2025-12-06 02:07:24,784 | INFO     | intersect: -7900524014.629431
[2025-12-06 03:08:16] 2025-12-06 02:07:24,785 | INFO     | chi2: 8.491739720295762
[2025-12-06 03:08:16] 2025-12-06 02:07:24,785 | INFO     | current chi2=8.491739720295762 (change=28.94419514981944 %)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,787 | INFO     | sum of square deviations: 572811910694.5834
[2025-12-06 03:08:16] 2025-12-06 02:07:24,826 | INFO     | sum of deviations: 2873987779923.58
[2025-12-06 03:08:16] 2025-12-06 02:07:24,826 | INFO     | mean x: 1764948690.1083944
[2025-12-06 03:08:16] 2025-12-06 02:07:24,826 | INFO     | mean y: 2901223.672371638
[2025-12-06 03:08:16] 2025-12-06 02:07:24,826 | INFO     | intersect: -8852433089.144007
[2025-12-06 03:08:16] 2025-12-06 02:07:24,828 | INFO     | chi2: 6.59635855289494
[2025-12-06 03:08:16] 2025-12-06 02:07:24,828 | INFO     | current chi2=6.59635855289494 (change=22.320292776646795 %)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,828 | INFO     | right removable region: 1226
[2025-12-06 03:08:16] 2025-12-06 02:07:24,830 | INFO     | sum of square deviations: 579841830690.7012
[2025-12-06 03:08:16] 2025-12-06 02:07:24,876 | INFO     | sum of deviations: 1637833432214.952
[2025-12-06 03:08:16] 2025-12-06 02:07:24,876 | INFO     | mean x: 1764949147.6038961
[2025-12-06 03:08:16] 2025-12-06 02:07:24,876 | INFO     | mean y: 2896795.2191558443
[2025-12-06 03:08:16] 2025-12-06 02:07:24,876 | INFO     | intersect: -4982415693.639369
[2025-12-06 03:08:16] 2025-12-06 02:07:24,878 | INFO     | chi2: 7.426959067712552
[2025-12-06 03:08:16] 2025-12-06 02:07:24,878 | INFO     | current chi2=7.426959067712552 (change=37.8538943104486 %)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,880 | INFO     | sum of square deviations: 572810326403.7993
[2025-12-06 03:08:16] 2025-12-06 02:07:24,925 | INFO     | sum of deviations: 1338621735219.4539
[2025-12-06 03:08:16] 2025-12-06 02:07:24,925 | INFO     | mean x: 1764949300.1075795
[2025-12-06 03:08:16] 2025-12-06 02:07:24,925 | INFO     | mean y: 2903278.8223308884
[2025-12-06 03:08:16] 2025-12-06 02:07:24,925 | INFO     | intersect: -4121672319.381651
[2025-12-06 03:08:16] 2025-12-06 02:07:24,927 | INFO     | chi2: 5.767002946664295
[2025-12-06 03:08:16] 2025-12-06 02:07:24,927 | INFO     | current chi2=5.767002946664295 (change=22.350414293578584 %)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,927 | INFO     | left removable region: 20
[2025-12-06 03:08:16] 2025-12-06 02:07:24,928 | INFO     | sum of square deviations: 543900839624.78076
[2025-12-06 03:08:16] 2025-12-06 02:07:24,969 | INFO     | sum of deviations: 1923073851941.5205
[2025-12-06 03:08:16] 2025-12-06 02:07:24,969 | INFO     | mean x: 1764949269.6177447
[2025-12-06 03:08:16] 2025-12-06 02:07:24,969 | INFO     | mean y: 2922840.3308457714
[2025-12-06 03:08:16] 2025-12-06 02:07:24,970 | INFO     | intersect: -6237420147.090659
[2025-12-06 03:08:16] 2025-12-06 02:07:24,971 | INFO     | chi2: 0.1794789778575507
[2025-12-06 03:08:16] 2025-12-06 02:07:24,971 | INFO     | current memory leak: 3.54 B/s (using 1206 data points, chi2=0.18)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,972 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-12-06 03:08:16] 2025-12-06 02:07:24,972 | INFO     | ..............................
[2025-12-06 03:08:16] 2025-12-06 02:07:24,972 | INFO     | . Timing measurements:
[2025-12-06 03:08:16] 2025-12-06 02:07:24,972 | INFO     | . get job = 0 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,972 | INFO     | . initial setup = 4 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | . payload setup = 157 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | . stage-in = 0 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | . payload execution = 75603 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | . stage-out = 5 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | . log creation = 2 s
[2025-12-06 03:08:16] 2025-12-06 02:07:24,973 | INFO     | ..............................
[2025-12-06 03:08:16] 2025-12-06 02:07:25,071 | INFO     | 
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | job summary report
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | --------------------------------------------------
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | PanDA job id: 6893857684
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | task id: 47523449
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | errors: (none)
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | pilot state: finished 
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | transexitcode: 0
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | exeerrorcode: 0
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | exeerrordiag: 
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | exitcode: 0
[2025-12-06 03:08:16] 2025-12-06 02:07:25,072 | INFO     | exitmsg: OK
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | cpuconsumptiontime: 283602 s
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | nevents: 1000
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | neventsw: 0
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | pid: 11305
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | pgrp: 11305
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | corecount: 8
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | event service: False
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 33: 2284399, 44: 2284455, 55: 2284611, 66: 2284639, 76: 2284667, 87: 2284723, 94: 2285013, 98: 2285321, 7
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | --------------------------------------------------
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | 
[2025-12-06 03:08:16] 2025-12-06 02:07:25,073 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-06 03:08:16] 2025-12-06 02:07:25,389 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 03:08:16] 2025-12-06 02:07:25,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 03:08:16] 2025-12-06 02:07:25,391 | INFO     | job 6893857684 has completed (purged errors)
[2025-12-06 03:08:16] 2025-12-06 02:07:25,391 | INFO     | overall cleanup function is called
[2025-12-06 03:08:16] 2025-12-06 02:07:26,406 | INFO     | --- collectZombieJob: --- 10, [11305]
[2025-12-06 03:08:16] 2025-12-06 02:07:26,407 | INFO     | zombie collector waiting for pid 11305
[2025-12-06 03:08:16] 2025-12-06 02:07:26,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 03:08:16] 2025-12-06 02:07:26,407 | INFO     | collected zombie processes
[2025-12-06 03:08:16] 2025-12-06 02:07:26,407 | INFO     | will attempt to kill all subprocesses of pid=11305
[2025-12-06 03:08:16] 2025-12-06 02:07:26,513 | INFO     | process IDs to be killed: [11305] (in reverse order)
[2025-12-06 03:08:16] 2025-12-06 02:07:27,382 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 03:08:16] 2025-12-06 02:07:27,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 03:08:16] 2025-12-06 02:07:27,385 | INFO     | did not find any defunct processes belonging to 11305
[2025-12-06 03:08:16] 2025-12-06 02:07:27,387 | INFO     | did not find any defunct processes belonging to 11305
[2025-12-06 03:08:16] 2025-12-06 02:07:27,438 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-06 03:08:16] 2025-12-06 02:07:27,438 | INFO     | ready for new job
[2025-12-06 03:08:16] 2025-12-06 02:07:27,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 03:08:16] 2025-12-06 02:07:27,442 | INFO     | ***************************************
[2025-12-06 03:08:16] 2025-12-06 02:07:27,442 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-06 03:08:16] 2025-12-06 02:07:27,442 | INFO     | ***************************************
[2025-12-06 03:08:16] 2025-12-06 02:07:27,443 | INFO     | 
[2025-12-06 03:08:16] 2025-12-06 02:07:27,443 | INFO     | pilot is running in a VM
[2025-12-06 03:08:16] 2025-12-06 02:07:27,443 | INFO     | architecture information:
[2025-12-06 03:08:16] 2025-12-06 02:07:27,450 | INFO     | executing command: cat /etc/os-release
[2025-12-06 03:08:16] 2025-12-06 02:07:27,724 | INFO     | cat /etc/os-release:
[2025-12-06 03:08:16] NAME="CentOS Linux"
[2025-12-06 03:08:16] VERSION="7 (Core)"
[2025-12-06 03:08:16] ID="centos"
[2025-12-06 03:08:16] ID_LIKE="rhel fedora"
[2025-12-06 03:08:16] VERSION_ID="7"
[2025-12-06 03:08:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 03:08:16] ANSI_COLOR="0;31"
[2025-12-06 03:08:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 03:08:16] HOME_URL="https://www.centos.org/"
[2025-12-06 03:08:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 03:08:16] 
[2025-12-06 03:08:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 03:08:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 03:08:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 03:08:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 03:08:16] 
[2025-12-06 03:08:16] 2025-12-06 02:07:27,724 | INFO     | ***************************************
[2025-12-06 03:08:16] 2025-12-06 02:07:28,228 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-06 03:08:16] 2025-12-06 02:07:28,532 | INFO     | sufficient remaining disk space (492706988032 B)
[2025-12-06 03:08:16] 2025-12-06 02:07:28,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 03:08:16] 2025-12-06 02:07:28,532 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 03:08:16] 2025-12-06 02:07:28,533 | INFO     | update_server=False
[2025-12-06 03:08:16] 2025-12-06 02:07:28,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 03:08:16] 2025-12-06 02:07:28,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 03:08:16] 2025-12-06 02:07:28,788 | INFO     | all job control threads have been joined
[2025-12-06 03:08:16] 2025-12-06 02:07:28,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 03:08:16] 2025-12-06 02:07:28,908 | INFO     | aborting loop
[2025-12-06 03:08:16] 2025-12-06 02:07:29,539 | INFO     | [job] retrieve thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:29,582 | INFO     | all data control threads have been joined
[2025-12-06 03:08:16] 2025-12-06 02:07:29,627 | INFO     | [payload] validate_post thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:29,655 | INFO     | all payload control threads have been joined
[2025-12-06 03:08:16] 2025-12-06 02:07:29,795 | INFO     | [job] control thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:29,914 | INFO     | [job] job monitor thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:29,917 | INFO     | [data] copytool_in thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:29,984 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 03:08:16] 2025-12-06 02:07:30,143 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 03:08:16] 2025-12-06 02:07:30,540 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,540 | INFO     | [data] copytool_out thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,589 | INFO     | [data] control thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,661 | INFO     | [payload] control thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,860 | INFO     | [payload] failed_post thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,869 | INFO     | [job] validate thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:30,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:31,089 | INFO     | [job] queue monitor thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:34,313 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 03:08:16] 2025-12-06 02:07:57,343 | INFO     | PID=4617 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-06 03:08:16] 2025-12-06 02:07:57,343 | INFO     | .. there are 9 such processes running
[2025-12-06 03:08:16] 2025-12-06 02:07:57,344 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 03:08:16] 2025-12-06 02:07:57,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 03:08:16] 2025-12-06 02:07:57,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 03:08:16] 2025-12-06 02:08:06,351 | INFO     | [monitor] cgroup control has ended
[2025-12-06 03:08:16] 2025-12-06 02:08:07,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687560562496)>', '<ExcThread(monitor, started 140686535939840)>']
[2025-12-06 03:08:16] 2025-12-06 02:08:07,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 03:08:16] 2025-12-06 02:08:07,404 | INFO     | [monitor] control thread has ended
[2025-12-06 03:08:16] 2025-12-06 02:08:12,075 | INFO     | all workflow threads have been joined
[2025-12-06 03:08:16] 2025-12-06 02:08:12,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 03:08:16] 2025-12-06 02:08:12,076 | INFO     | traces error code: 0
[2025-12-06 03:08:16] 2025-12-06 02:08:12,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 03:08:16] 2025-12-06 02:08:12,340 [wrapper] ==== pilot stdout END ====
[2025-12-06 03:08:16] 2025-12-06 02:08:12,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 03:08:16] 2025-12-06 02:08:12,409 [wrapper] pilotpid: 4617
[2025-12-06 03:08:16] 2025-12-06 02:08:12,456 [wrapper] Pilot exit status: 0
[2025-12-06 03:08:16] 2025-12-06 02:08:12,847 [wrapper] pandaids: 6893857684
[2025-12-06 03:08:16] 2025-12-06 02:08:13,883 [wrapper] cleanup supervisor_pilot 31260 4618
[2025-12-06 03:08:16] 2025-12-06 02:08:13,972 [wrapper] Test setup, not cleaning
[2025-12-06 03:08:16] 2025-12-06 02:08:14,066 [wrapper] apfmon messages muted
[2025-12-06 03:08:16] 2025-12-06 02:08:14,169 [wrapper] ==== wrapper stdout END ====
[2025-12-06 03:08:16] 2025-12-06 02:08:14,262 [wrapper] ==== wrapper stderr END ====
[2025-12-06 03:08:16]  *** Error codes and diagnostics ***
[2025-12-06 03:08:16]     "exeErrorCode": 0,
[2025-12-06 03:08:16]     "exeErrorDiag": "",
[2025-12-06 03:08:16]     "pilotErrorCode": 0,
[2025-12-06 03:08:16]     "pilotErrorDiag": "",
[2025-12-06 03:08:16]  *** Listing of results directory ***
[2025-12-06 03:08:16] total 1340580
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:11 queuedata.json
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-12-06 03:08:16] -rwx------. 1 boinc boinc     36292 Nov 20 14:12 runpilot2-wrapper.sh
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc       100 Dec  5 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 03:08:16] -rwxr-xr-x. 1 boinc boinc      7986 Dec  5 05:55 run_atlas
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc       105 Dec  5 05:55 job.xml
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc 409932276 Dec  5 05:55 EVNT.47493127._000499.pool.root.1
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc      6392 Dec  5 05:55 init_data.xml
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc     15847 Dec  5 05:55 start_atlas.sh
[2025-12-06 03:08:16] drwxrwx--x. 2 boinc boinc        68 Dec  5 05:55 shared
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc    590101 Dec  5 05:55 input.tar.gz
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc         0 Dec  5 05:55 boinc_lockfile
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc      2786 Dec  5 05:56 pandaJob.out
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc    985572 Dec  5 05:59 agis_schedconf.cvmfs.json
[2025-12-06 03:08:16] drwx------. 5 boinc boinc      4096 Dec  5 05:59 pilot3
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc       533 Dec  6 02:51 boinc_task_state.xml
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc 933851610 Dec  6 03:04 HITS.47523449._004985.pool.root.1
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc      1030 Dec  6 03:05 memory_monitor_summary.json
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc   1516240 Dec  6 03:05 agis_ddmendpoints.agis.ALL.json
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc   2351943 Dec  6 03:05 log.47523449._004985.job.log.tgz.1
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc      7939 Dec  6 03:07 heartbeat.json
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc        95 Dec  6 03:07 pilot_heartbeat.json
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc        29 Dec  6 03:08 wrapper_checkpoint.txt
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc      8192 Dec  6 03:08 boinc_mmap_file
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc      4883 Dec  6 03:08 pilotlog.txt
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc  10182709 Dec  6 03:08 log.47523449._004985.job.log.1
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc       353 Dec  6 03:08 output.list
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc       620 Dec  6 03:08 runtime_log
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc  12554240 Dec  6 03:08 result.tar.gz
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc      8817 Dec  6 03:08 runtime_log.err
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc       661 Dec  6 03:08 KhjKDmQdJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGhGKDmfGl3cm.diag
[2025-12-06 03:08:16] -rw-r--r--. 1 boinc boinc     20959 Dec  6 03:08 stderr.txt
[2025-12-06 03:08:16] HITS file was successfully produced:
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc 933851610 Dec  6 03:04 shared/HITS.pool.root.1
[2025-12-06 03:08:16]  *** Contents of shared directory: ***
[2025-12-06 03:08:16] total 1325152
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc 409932276 Dec  5 05:55 ATLAS.root_0
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc     15847 Dec  5 05:55 start_atlas.sh
[2025-12-06 03:08:16] -rw-r--r--. 2 boinc boinc    590101 Dec  5 05:55 input.tar.gz
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc 933851610 Dec  6 03:04 HITS.pool.root.1
[2025-12-06 03:08:16] -rw-------. 1 boinc boinc  12554240 Dec  6 03:08 result.tar.gz
03:08:17 (794): run_atlas exited; CPU time 283987.669587
03:08:17 (794): called boinc_finish(0)

</stderr_txt>
]]>

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