Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:21:13 (3852006): wrapper (7.7.26015): starting
09:21:13 (3852006): wrapper: running run_atlas (--nthreads 9)
[2025-12-03 09:21:13] Arguments: --nthreads 9
[2025-12-03 09:21:13] Threads: 9
[2025-12-03 09:21:13] Checking for CVMFS
[2025-12-03 09:21:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 09:21:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 09:21:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 09:21:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 09:21:13] 2.13.3.0 4548 3925 93640 153595 2 81 8417690 37030913 966 16776704 0 4477797 99.830 825267 47058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-03 09:21:13] CVMFS is ok
[2025-12-03 09:21:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 09:21:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 09:21:13] Further information can be found at the LHC@home message board.
[2025-12-03 09:21:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 09:21:13] Checking for apptainer binary...
[2025-12-03 09:21:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 09:21:13] Running /usr/bin/apptainer --version
[2025-12-03 09:21:13] apptainer version 1.4.4-1.el9
[2025-12-03 09:21:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 09:21:13] c-205-36.aglt2.org
[2025-12-03 09:21:13] apptainer works
[2025-12-03 09:21:13] Set ATHENA_PROC_NUMBER=9
[2025-12-03 09:21:13] Set ATHENA_CORE_NUMBER=9
[2025-12-03 09:21:13] Starting ATLAS job with PandaID=6897881196
[2025-12-03 09:21:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 15:02:53]  *** The last 200 lines of the pilot log: ***
[2025-12-03 15:02:53] 2025-12-03 20:02:02,442 | INFO     | time since job start (20441s) is within the limit (172800.0s)
[2025-12-03 15:02:53] 2025-12-03 20:02:02,771 | INFO     | monitor loop #1540: job 0:6897881196 is in state 'finished'
[2025-12-03 15:02:53] 2025-12-03 20:02:02,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,914 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 15:02:53] 2025-12-03 20:02:03,917 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2709.0064374999997
[2025-12-03 15:02:53] 2025-12-03 20:02:03,921 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897881196/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,921 | INFO     | extracted standard info from prmon json
[2025-12-03 15:02:53] 2025-12-03 20:02:03,921 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 15:02:53] 2025-12-03 20:02:03,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 15:02:53] 2025-12-03 20:02:03,925 | INFO     | fitting pss+swap vs Time
[2025-12-03 15:02:53] 2025-12-03 20:02:03,925 | INFO     | sum of square deviations: 11657491992.853764
[2025-12-03 15:02:53] 2025-12-03 20:02:03,927 | INFO     | sum of deviations: 332158086959.4121
[2025-12-03 15:02:53] 2025-12-03 20:02:03,927 | INFO     | mean x: 1764781887.0208955
[2025-12-03 15:02:53] 2025-12-03 20:02:03,927 | INFO     | mean y: 3157449.2268656716
[2025-12-03 15:02:53] 2025-12-03 20:02:03,927 | INFO     | intersect: -50280949617.09787
[2025-12-03 15:02:53] 2025-12-03 20:02:03,928 | INFO     | chi2: 3.3128132980422227
[2025-12-03 15:02:53] 2025-12-03 20:02:03,928 | INFO     | sum of square deviations: 11143261230.351458
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | sum of deviations: 400739935062.327
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | mean x: 1764781734.521212
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | mean y: 3177676.381818182
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | intersect: -63462849285.718376
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | chi2: 1.7919823900542664
[2025-12-03 15:02:53] 2025-12-03 20:02:03,930 | INFO     | current chi2=1.7919823900542664 (change=45.907534508108974 %)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,931 | INFO     | sum of square deviations: 10644379592.849188
[2025-12-03 15:02:53] 2025-12-03 20:02:03,932 | INFO     | sum of deviations: 389114729391.23395
[2025-12-03 15:02:53] 2025-12-03 20:02:03,932 | INFO     | mean x: 1764781582.0215385
[2025-12-03 15:02:53] 2025-12-03 20:02:03,932 | INFO     | mean y: 3174122.252307692
[2025-12-03 15:02:53] 2025-12-03 20:02:03,933 | INFO     | intersect: -64509980611.9387
[2025-12-03 15:02:53] 2025-12-03 20:02:03,933 | INFO     | chi2: 1.7872123302913743
[2025-12-03 15:02:53] 2025-12-03 20:02:03,933 | INFO     | current chi2=1.7872123302913743 (change=0.266188986530592 %)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,933 | INFO     | right removable region: 324
[2025-12-03 15:02:53] 2025-12-03 20:02:03,933 | INFO     | sum of square deviations: 11143256960.351458
[2025-12-03 15:02:53] 2025-12-03 20:02:03,935 | INFO     | sum of deviations: 248811184265.86667
[2025-12-03 15:02:53] 2025-12-03 20:02:03,935 | INFO     | mean x: 1764782039.521212
[2025-12-03 15:02:53] 2025-12-03 20:02:03,935 | INFO     | mean y: 3182046.2333333334
[2025-12-03 15:02:53] 2025-12-03 20:02:03,935 | INFO     | intersect: -39401590794.12619
[2025-12-03 15:02:53] 2025-12-03 20:02:03,935 | INFO     | chi2: 1.6353171420975323
[2025-12-03 15:02:53] 2025-12-03 20:02:03,936 | INFO     | current chi2=1.6353171420975323 (change=50.6366041495922 %)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,936 | INFO     | sum of square deviations: 10644371052.849188
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | sum of deviations: 230038636479.00916
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | mean x: 1764782192.0215385
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | mean y: 3187776.1415384617
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | intersect: -38136039719.72876
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | chi2: 1.6242634191957264
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | current chi2=1.6242634191957264 (change=0.6759375669252718 %)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | left removable region: 20
[2025-12-03 15:02:53] 2025-12-03 20:02:03,938 | INFO     | sum of square deviations: 8711443067.881588
[2025-12-03 15:02:53] 2025-12-03 20:02:03,940 | INFO     | sum of deviations: 252513655021.26312
[2025-12-03 15:02:53] 2025-12-03 20:02:03,940 | INFO     | mean x: 1764782161.5197368
[2025-12-03 15:02:53] 2025-12-03 20:02:03,940 | INFO     | mean y: 3216957.789473684
[2025-12-03 15:02:53] 2025-12-03 20:02:03,940 | INFO     | intersect: -51151521751.88342
[2025-12-03 15:02:53] 2025-12-03 20:02:03,940 | INFO     | chi2: 0.07352030046734315
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | current memory leak: 28.99 B/s (using 304 data points, chi2=0.07)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | could have reported an average CPU frequency of 2737 MHz (15 samples)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | ..............................
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . Timing measurements:
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . get job = 0 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . initial setup = 2 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . payload setup = 3 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . stage-in = 0 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . payload execution = 20417 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . stage-out = 2 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | . log creation = 0 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,941 | INFO     | ..............................
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | 
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | job summary report
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | --------------------------------------------------
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | PanDA job id: 6897881196
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | task id: 47556173
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | errors: (none)
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | pilot state: finished 
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | transexitcode: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:03,995 | INFO     | exeerrorcode: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | exeerrordiag: 
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | exitcode: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | exitmsg: OK
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | cpuconsumptiontime: 180416 s
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | nevents: 1000
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | neventsw: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | pid: 3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | pgrp: 3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | corecount: 9
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | event service: False
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | sizes: {0: 2284264, 2: 2284526, 11: 2284554, 20424: 2319136, 20427: 2328186, 20430: 2328376}
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | --------------------------------------------------
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | 
[2025-12-03 15:02:53] 2025-12-03 20:02:03,996 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-03 15:02:53] 2025-12-03 20:02:04,006 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | job 6897881196 has completed (purged errors)
[2025-12-03 15:02:53] 2025-12-03 20:02:04,008 | INFO     | overall cleanup function is called
[2025-12-03 15:02:53] 2025-12-03 20:02:05,020 | INFO     | --- collectZombieJob: --- 10, [3862133]
[2025-12-03 15:02:53] 2025-12-03 20:02:05,020 | INFO     | zombie collector waiting for pid 3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:05,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 15:02:53] 2025-12-03 20:02:05,020 | INFO     | collected zombie processes
[2025-12-03 15:02:53] 2025-12-03 20:02:05,020 | INFO     | will attempt to kill all subprocesses of pid=3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:05,119 | INFO     | process IDs to be killed: [3862133] (in reverse order)
[2025-12-03 15:02:53] 2025-12-03 20:02:05,148 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 15:02:53] 2025-12-03 20:02:05,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 15:02:53] 2025-12-03 20:02:05,150 | INFO     | did not find any defunct processes belonging to 3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:05,153 | INFO     | did not find any defunct processes belonging to 3862133
[2025-12-03 15:02:53] 2025-12-03 20:02:05,154 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 15:02:53] 2025-12-03 20:02:05,154 | INFO     | ready for new job
[2025-12-03 15:02:53] 2025-12-03 20:02:05,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 15:02:53] 2025-12-03 20:02:05,155 | INFO     | ***************************************
[2025-12-03 15:02:53] 2025-12-03 20:02:05,156 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 15:02:53] 2025-12-03 20:02:05,156 | INFO     | ***************************************
[2025-12-03 15:02:53] 2025-12-03 20:02:05,156 | INFO     | 
[2025-12-03 15:02:53] 2025-12-03 20:02:05,157 | INFO     | architecture information:
[2025-12-03 15:02:53] 2025-12-03 20:02:05,157 | INFO     | executing command: cat /etc/os-release
[2025-12-03 15:02:53] 2025-12-03 20:02:05,163 | INFO     | cat /etc/os-release:
[2025-12-03 15:02:53] NAME="CentOS Linux"
[2025-12-03 15:02:53] VERSION="7 (Core)"
[2025-12-03 15:02:53] ID="centos"
[2025-12-03 15:02:53] ID_LIKE="rhel fedora"
[2025-12-03 15:02:53] VERSION_ID="7"
[2025-12-03 15:02:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 15:02:53] ANSI_COLOR="0;31"
[2025-12-03 15:02:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 15:02:53] HOME_URL="https://www.centos.org/"
[2025-12-03 15:02:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 15:02:53] 
[2025-12-03 15:02:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 15:02:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 15:02:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 15:02:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 15:02:53] 
[2025-12-03 15:02:53] 2025-12-03 20:02:05,164 | INFO     | ***************************************
[2025-12-03 15:02:53] 2025-12-03 20:02:05,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-03 15:02:53] 2025-12-03 20:02:05,673 | INFO     | sufficient remaining disk space (41678798848 B)
[2025-12-03 15:02:53] 2025-12-03 20:02:05,673 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 15:02:53] 2025-12-03 20:02:05,673 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 15:02:53] 2025-12-03 20:02:05,673 | INFO     | update_server=False
[2025-12-03 15:02:53] 2025-12-03 20:02:05,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 15:02:53] 2025-12-03 20:02:05,674 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 15:02:53] 2025-12-03 20:02:05,799 | INFO     | all job control threads have been joined
[2025-12-03 15:02:53] 2025-12-03 20:02:06,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 15:02:53] 2025-12-03 20:02:06,279 | INFO     | aborting loop
[2025-12-03 15:02:53] 2025-12-03 20:02:06,398 | INFO     | all data control threads have been joined
[2025-12-03 15:02:53] 2025-12-03 20:02:06,398 | INFO     | all payload control threads have been joined
[2025-12-03 15:02:53] 2025-12-03 20:02:06,679 | INFO     | [job] retrieve thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:06,679 | INFO     | [job] queue monitor thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:06,698 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:06,804 | INFO     | [job] control thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 15:02:53] 2025-12-03 20:02:07,284 | INFO     | [job] job monitor thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,403 | INFO     | [data] control thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,403 | INFO     | [payload] control thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,479 | INFO     | [payload] failed_post thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,551 | INFO     | [data] copytool_in thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,581 | INFO     | [payload] validate_post thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:07,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 15:02:53] 2025-12-03 20:02:07,816 | INFO     | [job] validate thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:08,072 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:08,073 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:09,150 | INFO     | [data] copytool_out thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:11,698 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 15:02:53] 2025-12-03 20:02:35,645 | INFO     | PID=3855724 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 15:02:53] 2025-12-03 20:02:35,645 | INFO     | .. there are 2 such processes running
[2025-12-03 15:02:53] 2025-12-03 20:02:35,645 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 15:02:53] 2025-12-03 20:02:35,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 15:02:53] 2025-12-03 20:02:35,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 15:02:53] 2025-12-03 20:02:46,558 | INFO     | [monitor] cgroup control has ended
[2025-12-03 15:02:53] 2025-12-03 20:02:48,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140290620647232)>', '<ExcThread(monitor, started 140289981269760)>']
[2025-12-03 15:02:53] 2025-12-03 20:02:48,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 15:02:53] 2025-12-03 20:02:48,704 | INFO     | [monitor] control thread has ended
[2025-12-03 15:02:53] 2025-12-03 20:02:53,557 | INFO     | all workflow threads have been joined
[2025-12-03 15:02:53] 2025-12-03 20:02:53,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 15:02:53] 2025-12-03 20:02:53,558 | INFO     | traces error code: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:53,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 15:02:53] 2025-12-03 20:02:53,623 [wrapper] ==== pilot stdout END ====
[2025-12-03 15:02:53] 2025-12-03 20:02:53,625 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 15:02:53] 2025-12-03 20:02:53,626 [wrapper] pilotpid: 3855724
[2025-12-03 15:02:53] 2025-12-03 20:02:53,628 [wrapper] Pilot exit status: 0
[2025-12-03 15:02:53] 2025-12-03 20:02:53,633 [wrapper] pandaids: 6897881196
[2025-12-03 15:02:53] 2025-12-03 20:02:53,655 [wrapper] cleanup supervisor_pilot 4101970 3855725
[2025-12-03 15:02:53] 2025-12-03 20:02:53,656 [wrapper] Test setup, not cleaning
[2025-12-03 15:02:53] 2025-12-03 20:02:53,658 [wrapper] apfmon messages muted
[2025-12-03 15:02:53] 2025-12-03 20:02:53,659 [wrapper] ==== wrapper stdout END ====
[2025-12-03 15:02:53] 2025-12-03 20:02:53,661 [wrapper] ==== wrapper stderr END ====
[2025-12-03 15:02:53]  *** Error codes and diagnostics ***
[2025-12-03 15:02:53]     "exeErrorCode": 0,
[2025-12-03 15:02:53]     "exeErrorDiag": "",
[2025-12-03 15:02:53]     "pilotErrorCode": 0,
[2025-12-03 15:02:53]     "pilotErrorDiag": "",
[2025-12-03 15:02:53]  *** Listing of results directory ***
[2025-12-03 15:02:53] total 1311596
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:00 queuedata.json
[2025-12-03 15:02:53] -rwx------. 1 boincer umatlas     36292 Nov 25 21:03 runpilot2-wrapper.sh
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas       100 Dec  3 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 15:02:53] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 09:21 run_atlas
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas       105 Dec  3 09:21 job.xml
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas 409748043 Dec  3 09:21 EVNT.47483658._003144.pool.root.1
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 09:21 start_atlas.sh
[2025-12-03 15:02:53] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 09:21 shared
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas    590106 Dec  3 09:21 input.tar.gz
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas         0 Dec  3 09:21 boinc_lockfile
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas      2785 Dec  3 09:21 pandaJob.out
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas    985783 Dec  3 09:21 agis_schedconf.cvmfs.json
[2025-12-03 15:02:53] drwx------. 5 boincer umatlas      4096 Dec  3 09:21 pilot3
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas       532 Dec  3 14:56 boinc_task_state.xml
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas 920161076 Dec  3 15:01 HITS.47556173._001003.pool.root.1
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas      6527 Dec  3 15:01 init_data.xml
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas        95 Dec  3 15:01 pilot_heartbeat.json
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas      1045 Dec  3 15:01 memory_monitor_summary.json
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas   1516240 Dec  3 15:02 agis_ddmendpoints.agis.ALL.json
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas   1740202 Dec  3 15:02 log.47556173._001003.job.log.tgz.1
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas      8616 Dec  3 15:02 heartbeat.json
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 15:02 boinc_mmap_file
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas        29 Dec  3 15:02 wrapper_checkpoint.txt
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas      4823 Dec  3 15:02 pilotlog.txt
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas   2886665 Dec  3 15:02 log.47556173._001003.job.log.1
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas       353 Dec  3 15:02 output.list
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas       620 Dec  3 15:02 runtime_log
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas   4648960 Dec  3 15:02 result.tar.gz
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas      8818 Dec  3 15:02 runtime_log.err
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas       657 Dec  3 15:02 Q9LLDm53Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdhMKDm4yZwBo.diag
[2025-12-03 15:02:53] -rw-r--r--. 1 boincer umatlas     21307 Dec  3 15:02 stderr.txt
[2025-12-03 15:02:53] HITS file was successfully produced:
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas 920161076 Dec  3 15:01 shared/HITS.pool.root.1
[2025-12-03 15:02:53]  *** Contents of shared directory: ***
[2025-12-03 15:02:53] total 1303888
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas 409748043 Dec  3 09:21 ATLAS.root_0
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 09:21 start_atlas.sh
[2025-12-03 15:02:53] -rw-r--r--. 2 boincer umatlas    590106 Dec  3 09:21 input.tar.gz
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas 920161076 Dec  3 15:01 HITS.pool.root.1
[2025-12-03 15:02:53] -rw-------. 1 boincer umatlas   4648960 Dec  3 15:02 result.tar.gz
15:02:55 (3852006): run_atlas exited; CPU time 180472.663195
15:02:55 (3852006): called boinc_finish(0)

</stderr_txt>
]]>

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