Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:52:34 (1352924): wrapper (7.7.26015): starting
08:52:34 (1352924): wrapper: running run_atlas (--nthreads 10)
[2025-12-03 08:52:34] Arguments: --nthreads 10
[2025-12-03 08:52:34] Threads: 10
[2025-12-03 08:52:34] Checking for CVMFS
[2025-12-03 08:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 08:52:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 08:52:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 08:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 08:52:36] 2.13.3.0 12357 40167 261568 153595 1 578 25341814 32503808 40881 16776704 0 637257255 99.623 577732775 45398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 08:52:36] CVMFS is ok
[2025-12-03 08:52:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 08:52:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 08:52:36] Further information can be found at the LHC@home message board.
[2025-12-03 08:52:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 08:52:36] Checking for apptainer binary...
[2025-12-03 08:52:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 08:52:36] Running /usr/bin/apptainer --version
[2025-12-03 08:52:36] apptainer version 1.4.4-1.el9
[2025-12-03 08:52:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 08:52:37] c8-7-2.aglt2.org
[2025-12-03 08:52:37] apptainer works
[2025-12-03 08:52:37] Set ATHENA_PROC_NUMBER=10
[2025-12-03 08:52:37] Set ATHENA_CORE_NUMBER=10
[2025-12-03 08:52:37] Starting ATLAS job with PandaID=6895816606
[2025-12-03 08:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 15:30:49]  *** The last 200 lines of the pilot log: ***
[2025-12-03 15:30:49] 2025-12-03 20:30:01,687 | INFO     | monitor loop #1517: job 0:6895816606 is in state 'finished'
[2025-12-03 15:30:49] 2025-12-03 20:30:01,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:30:49] 2025-12-03 20:30:03,228 | INFO     | time since job start (23773s) is within the limit (172800.0s)
[2025-12-03 15:30:49] 2025-12-03 20:30:04,192 | INFO     | monitor loop #1518: job 0:6895816606 is in state 'finished'
[2025-12-03 15:30:49] 2025-12-03 20:30:04,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:30:49] 2025-12-03 20:30:05,235 | INFO     | time since job start (23775s) is within the limit (172800.0s)
[2025-12-03 15:30:49] 2025-12-03 20:30:06,698 | INFO     | monitor loop #1519: job 0:6895816606 is in state 'finished'
[2025-12-03 15:30:49] 2025-12-03 20:30:06,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:30:49] 2025-12-03 20:30:08,107 | INFO     | PID=1371411 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 15:30:49] 2025-12-03 20:30:08,108 | INFO     | .. there are 38 such processes running
[2025-12-03 15:30:49] 2025-12-03 20:30:09,109 | INFO     | time since job start (23779s) is within the limit (172800.0s)
[2025-12-03 15:30:49] 2025-12-03 20:30:09,214 | INFO     | monitor loop #1520: job 0:6895816606 is in state 'finished'
[2025-12-03 15:30:49] 2025-12-03 20:30:09,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:30:49] 2025-12-03 20:30:11,150 | INFO     | time since job start (23781s) is within the limit (172800.0s)
[2025-12-03 15:30:49] 2025-12-03 20:30:11,730 | INFO     | monitor loop #1521: job 0:6895816606 is in state 'finished'
[2025-12-03 15:30:49] 2025-12-03 20:30:11,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 15:30:49] 2025-12-03 20:30:13,158 | INFO     | time since job start (23783s) is within the limit (172800.0s)
[2025-12-03 15:30:49] 2025-12-03 20:30:13,961 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 15:30:49] 2025-12-03 20:30:13,966 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9937187499995
[2025-12-03 15:30:49] 2025-12-03 20:30:13,996 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895816606/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 15:30:49] 2025-12-03 20:30:13,996 | INFO     | extracted standard info from prmon json
[2025-12-03 15:30:49] 2025-12-03 20:30:13,996 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 15:30:49] 2025-12-03 20:30:13,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 15:30:49] 2025-12-03 20:30:14,003 | INFO     | fitting pss+swap vs Time
[2025-12-03 15:30:49] 2025-12-03 20:30:14,003 | INFO     | sum of square deviations: 17971817163.116177
[2025-12-03 15:30:49] 2025-12-03 20:30:14,031 | INFO     | sum of deviations: -56471210341.99994
[2025-12-03 15:30:49] 2025-12-03 20:30:14,032 | INFO     | mean x: 1764781955.9302325
[2025-12-03 15:30:49] 2025-12-03 20:30:14,032 | INFO     | mean y: 2879371.111111111
[2025-12-03 15:30:49] 2025-12-03 20:30:14,032 | INFO     | intersect: 5548193578.1593895
[2025-12-03 15:30:49] 2025-12-03 20:30:14,032 | INFO     | chi2: 37.05514929963464
[2025-12-03 15:30:49] 2025-12-03 20:30:14,032 | INFO     | sum of square deviations: 17284276856.23301
[2025-12-03 15:30:49] 2025-12-03 20:30:14,034 | INFO     | sum of deviations: 75698578007.02942
[2025-12-03 15:30:49] 2025-12-03 20:30:14,034 | INFO     | mean x: 1764781803.4424083
[2025-12-03 15:30:49] 2025-12-03 20:30:14,034 | INFO     | mean y: 2908672.7513089003
[2025-12-03 15:30:49] 2025-12-03 20:30:14,034 | INFO     | intersect: -7726166377.622917
[2025-12-03 15:30:49] 2025-12-03 20:30:14,035 | INFO     | chi2: 32.833803230322516
[2025-12-03 15:30:49] 2025-12-03 20:30:14,035 | INFO     | current chi2=32.833803230322516 (change=11.392063314001403 %)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,035 | INFO     | right removable region: 381
[2025-12-03 15:30:49] 2025-12-03 20:30:14,035 | INFO     | sum of square deviations: 17284057256.233006
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | sum of deviations: -220931715633.96085
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | mean x: 1764782108.4424083
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | mean y: 2915833.4790575914
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | intersect: 22561064835.079647
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | chi2: 32.24731106781571
[2025-12-03 15:30:49] 2025-12-03 20:30:14,037 | INFO     | current chi2=32.24731106781571 (change=12.974818136453544 %)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,038 | INFO     | left removable region: 10
[2025-12-03 15:30:49] 2025-12-03 20:30:14,038 | INFO     | sum of square deviations: 15833464100.673843
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | sum of deviations: -197647672815.95413
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | mean x: 1764782077.9703505
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | mean y: 2985228.1859838273
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | intersect: 22032597227.198822
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | chi2: 23.728658554879086
[2025-12-03 15:30:49] 2025-12-03 20:30:14,040 | INFO     | current memory leak: -12.48 B/s (using 371 data points, chi2=23.73)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | could have reported an average CPU frequency of 3794 MHz (17 samples)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | ..............................
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . Timing measurements:
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . get job = 0 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . initial setup = 5 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . payload setup = 56 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . stage-in = 0 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . payload execution = 23582 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . stage-out = 7 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | . log creation = 3 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,041 | INFO     | ..............................
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | 
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | job summary report
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | --------------------------------------------------
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | PanDA job id: 6895816606
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | task id: 47556149
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | errors: (none)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | pilot state: finished 
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | transexitcode: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | exeerrorcode: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | exeerrordiag: 
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | exitcode: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | exitmsg: OK
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | cpuconsumptiontime: 135206 s
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | nevents: 1000
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | neventsw: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:14,154 | INFO     | pid: 1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | pgrp: 1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | corecount: 10
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | event service: False
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | sizes: {0: 2284087, 1: 2284286, 12: 2284286, 23: 2284314, 29: 2284604, 33: 2284632, 23644: 2320748, 23651: 2329742, 23653: 2329798, 23720: 2330132}
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | --------------------------------------------------
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | 
[2025-12-03 15:30:49] 2025-12-03 20:30:14,155 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 15:30:49] 2025-12-03 20:30:14,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | job 6895816606 has completed (purged errors)
[2025-12-03 15:30:49] 2025-12-03 20:30:14,255 | INFO     | overall cleanup function is called
[2025-12-03 15:30:49] 2025-12-03 20:30:15,296 | INFO     | --- collectZombieJob: --- 10, [1397610]
[2025-12-03 15:30:49] 2025-12-03 20:30:15,296 | INFO     | zombie collector waiting for pid 1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:15,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 15:30:49] 2025-12-03 20:30:15,296 | INFO     | collected zombie processes
[2025-12-03 15:30:49] 2025-12-03 20:30:15,296 | INFO     | will attempt to kill all subprocesses of pid=1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:16,657 | INFO     | process IDs to be killed: [1397610] (in reverse order)
[2025-12-03 15:30:49] 2025-12-03 20:30:17,385 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 15:30:49] 2025-12-03 20:30:17,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 15:30:49] 2025-12-03 20:30:17,451 | INFO     | did not find any defunct processes belonging to 1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:17,553 | INFO     | did not find any defunct processes belonging to 1397610
[2025-12-03 15:30:49] 2025-12-03 20:30:17,570 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 15:30:49] 2025-12-03 20:30:17,570 | INFO     | ready for new job
[2025-12-03 15:30:49] 2025-12-03 20:30:17,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 15:30:49] 2025-12-03 20:30:17,573 | INFO     | ***************************************
[2025-12-03 15:30:49] 2025-12-03 20:30:17,573 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 15:30:49] 2025-12-03 20:30:17,573 | INFO     | ***************************************
[2025-12-03 15:30:49] 2025-12-03 20:30:17,573 | INFO     | 
[2025-12-03 15:30:49] 2025-12-03 20:30:17,590 | INFO     | architecture information:
[2025-12-03 15:30:49] 2025-12-03 20:30:17,597 | INFO     | executing command: cat /etc/os-release
[2025-12-03 15:30:49] 2025-12-03 20:30:17,688 | INFO     | cat /etc/os-release:
[2025-12-03 15:30:49] NAME="CentOS Linux"
[2025-12-03 15:30:49] VERSION="7 (Core)"
[2025-12-03 15:30:49] ID="centos"
[2025-12-03 15:30:49] ID_LIKE="rhel fedora"
[2025-12-03 15:30:49] VERSION_ID="7"
[2025-12-03 15:30:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 15:30:49] ANSI_COLOR="0;31"
[2025-12-03 15:30:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 15:30:49] HOME_URL="https://www.centos.org/"
[2025-12-03 15:30:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 15:30:49] 
[2025-12-03 15:30:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 15:30:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 15:30:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 15:30:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 15:30:49] 
[2025-12-03 15:30:49] 2025-12-03 20:30:17,689 | INFO     | ***************************************
[2025-12-03 15:30:49] 2025-12-03 20:30:18,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | INFO     | sufficient remaining disk space (91025833984 B)
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | INFO     | update_server=False
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 15:30:49] 2025-12-03 20:30:18,266 | INFO     | aborting loop
[2025-12-03 15:30:49] 2025-12-03 20:30:18,451 | INFO     | all payload control threads have been joined
[2025-12-03 15:30:49] 2025-12-03 20:30:18,784 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 15:30:49] 2025-12-03 20:30:18,861 | INFO     | all job control threads have been joined
[2025-12-03 15:30:49] 2025-12-03 20:30:18,942 | INFO     | all data control threads have been joined
[2025-12-03 15:30:49] 2025-12-03 20:30:19,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 15:30:49] 2025-12-03 20:30:19,271 | INFO     | [job] retrieve thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:19,272 | INFO     | [job] job monitor thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:19,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:19,481 | INFO     | [payload] control thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:19,867 | INFO     | [job] control thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:19,947 | INFO     | [data] control thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,008 | INFO     | [payload] validate_post thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,013 | INFO     | [job] validate thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,028 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,028 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,039 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,057 | INFO     | [data] copytool_in thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,208 | INFO     | [job] queue monitor thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,418 | INFO     | [payload] failed_post thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:20,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 15:30:49] 2025-12-03 20:30:20,791 | INFO     | [data] copytool_out thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:24,766 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 15:30:49] 2025-12-03 20:30:31,272 | INFO     | [monitor] cgroup control has ended
[2025-12-03 15:30:49] 2025-12-03 20:30:32,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020428564288)>', '<ExcThread(monitor, started 140019926808320)>']
[2025-12-03 15:30:49] 2025-12-03 20:30:37,747 | INFO     | all workflow threads have been joined
[2025-12-03 15:30:49] 2025-12-03 20:30:37,747 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 15:30:49] 2025-12-03 20:30:37,747 | INFO     | traces error code: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:37,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 15:30:49] 2025-12-03 20:30:48,323 | INFO     | PID=1371411 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 15:30:49] 2025-12-03 20:30:48,323 | INFO     | .. there are 38 such processes running
[2025-12-03 15:30:49] 2025-12-03 20:30:48,324 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 15:30:49] 2025-12-03 20:30:48,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 15:30:49] 2025-12-03 20:30:48,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 15:30:49] 2025-12-03 20:30:48,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 15:30:49] 2025-12-03 20:30:48,324 | INFO     | [monitor] control thread has ended
[2025-12-03 15:30:49] 2025-12-03 20:30:48,592 [wrapper] ==== pilot stdout END ====
[2025-12-03 15:30:49] 2025-12-03 20:30:48,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 15:30:49] 2025-12-03 20:30:48,675 [wrapper] pilotpid: 1371411
[2025-12-03 15:30:49] 2025-12-03 20:30:48,717 [wrapper] Pilot exit status: 0
[2025-12-03 15:30:49] 2025-12-03 20:30:48,917 [wrapper] pandaids: 6895816606
[2025-12-03 15:30:49] 2025-12-03 20:30:49,095 [wrapper] cleanup supervisor_pilot 1959546 1371412
[2025-12-03 15:30:49] 2025-12-03 20:30:49,130 [wrapper] Test setup, not cleaning
[2025-12-03 15:30:49] 2025-12-03 20:30:49,166 [wrapper] apfmon messages muted
[2025-12-03 15:30:49] 2025-12-03 20:30:49,205 [wrapper] ==== wrapper stdout END ====
[2025-12-03 15:30:49] 2025-12-03 20:30:49,233 [wrapper] ==== wrapper stderr END ====
[2025-12-03 15:30:49]  *** Error codes and diagnostics ***
[2025-12-03 15:30:49]     "exeErrorCode": 0,
[2025-12-03 15:30:49]     "exeErrorDiag": "",
[2025-12-03 15:30:49]     "pilotErrorCode": 0,
[2025-12-03 15:30:49]     "pilotErrorDiag": "",
[2025-12-03 15:30:49]  *** Listing of results directory ***
[2025-12-03 15:30:49] total 1301224
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 10:13 pilot3.tar.gz
[2025-12-03 15:30:49] -rwx------. 1 boincer umatlas     36292 Nov 24 10:57 runpilot2-wrapper.sh
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 10:57 queuedata.json
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas       100 Dec  3 08:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 15:30:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 08:52 run_atlas
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas       105 Dec  3 08:52 job.xml
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas 408584674 Dec  3 08:52 EVNT.47483658._001373.pool.root.1
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 08:52 start_atlas.sh
[2025-12-03 15:30:49] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 08:52 shared
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas    590102 Dec  3 08:52 input.tar.gz
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas         0 Dec  3 08:52 boinc_lockfile
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas      2782 Dec  3 08:52 pandaJob.out
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas        57 Dec  3 08:52 setup.sh.local
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas    985783 Dec  3 08:53 agis_schedconf.cvmfs.json
[2025-12-03 15:30:49] drwx------. 5 boincer umatlas      4096 Dec  3 08:53 pilot3
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas       533 Dec  3 14:57 boinc_task_state.xml
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas 909921546 Dec  3 15:27 HITS.47556149._003591.pool.root.1
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas      1063 Dec  3 15:28 memory_monitor_summary.json
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas   1516240 Dec  3 15:29 agis_ddmendpoints.agis.ALL.json
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas   1893151 Dec  3 15:29 log.47556149._003591.job.log.tgz.1
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas      7172 Dec  3 15:30 init_data.xml
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas        95 Dec  3 15:30 pilot_heartbeat.json
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas      8614 Dec  3 15:30 heartbeat.json
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 15:30 boinc_mmap_file
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas        29 Dec  3 15:30 wrapper_checkpoint.txt
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas       823 Dec  3 15:30 pilotlog.txt
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas   3121868 Dec  3 15:30 log.47556149._003591.job.log.1
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas       353 Dec  3 15:30 output.list
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas       620 Dec  3 15:30 runtime_log
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas   5038080 Dec  3 15:30 result.tar.gz
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas      9335 Dec  3 15:30 runtime_log.err
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas       662 Dec  3 15:30 jPOMDmA7nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7jLKDmuJuk7m.diag
[2025-12-03 15:30:49] -rw-r--r--. 1 boincer umatlas     21893 Dec  3 15:30 stderr.txt
[2025-12-03 15:30:49] HITS file was successfully produced:
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas 909921546 Dec  3 15:27 shared/HITS.pool.root.1
[2025-12-03 15:30:49]  *** Contents of shared directory: ***
[2025-12-03 15:30:49] total 1293132
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas 408584674 Dec  3 08:52 ATLAS.root_0
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 08:52 start_atlas.sh
[2025-12-03 15:30:49] -rw-r--r--. 2 boincer umatlas    590102 Dec  3 08:52 input.tar.gz
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas 909921546 Dec  3 15:27 HITS.pool.root.1
[2025-12-03 15:30:49] -rw-------. 1 boincer umatlas   5038080 Dec  3 15:30 result.tar.gz
15:30:51 (1352924): run_atlas exited; CPU time 135380.253564
15:30:51 (1352924): called boinc_finish(0)

</stderr_txt>
]]>

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