Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:21:35 (317931): wrapper (7.7.26015): starting
06:21:35 (317931): wrapper: running run_atlas (--nthreads 10)
[2025-12-03 06:21:35] Arguments: --nthreads 10
[2025-12-03 06:21:35] Threads: 10
[2025-12-03 06:21:35] Checking for CVMFS
[2025-12-03 06:21:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 06:21:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 06:21:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 06:21:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 06:21:36] 2.13.3.0 7100 40000 183784 153592 2 80 22781866 40960000 30759 16776704 0 534703314 99.700 380996816 47872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 06:21:36] CVMFS is ok
[2025-12-03 06:21:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 06:21:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 06:21:36] Further information can be found at the LHC@home message board.
[2025-12-03 06:21:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 06:21:36] Checking for apptainer binary...
[2025-12-03 06:21:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 06:21:36] Running /usr/bin/apptainer --version
[2025-12-03 06:21:36] apptainer version 1.4.4-1.el9
[2025-12-03 06:21:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 06:21:37] c8-6-10.aglt2.org
[2025-12-03 06:21:37] apptainer works
[2025-12-03 06:21:37] Set ATHENA_PROC_NUMBER=10
[2025-12-03 06:21:37] Set ATHENA_CORE_NUMBER=10
[2025-12-03 06:21:37] Starting ATLAS job with PandaID=6894238274
[2025-12-03 06:21:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:29:05]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:29:05] 2025-12-03 14:28:24,014 | INFO     | time since job start (11153s) is within the limit (172800.0s)
[2025-12-03 09:29:05] 2025-12-03 14:28:26,020 | INFO     | time since job start (11155s) is within the limit (172800.0s)
[2025-12-03 09:29:05] 2025-12-03 14:28:26,509 | INFO     | monitor loop #734: job 0:6894238274 is in state 'finished'
[2025-12-03 09:29:05] 2025-12-03 14:28:26,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:29:05] 2025-12-03 14:28:28,027 | INFO     | time since job start (11157s) is within the limit (172800.0s)
[2025-12-03 09:29:05] 2025-12-03 14:28:29,014 | INFO     | monitor loop #735: job 0:6894238274 is in state 'finished'
[2025-12-03 09:29:05] 2025-12-03 14:28:29,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,034 | INFO     | time since job start (11159s) is within the limit (172800.0s)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,834 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 09:29:05] 2025-12-03 14:28:30,859 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9920703124976
[2025-12-03 09:29:05] 2025-12-03 14:28:30,920 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894238274/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,938 | INFO     | extracted standard info from prmon json
[2025-12-03 09:29:05] 2025-12-03 14:28:30,938 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:29:05] 2025-12-03 14:28:30,938 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:29:05] 2025-12-03 14:28:30,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 09:29:05] 2025-12-03 14:28:30,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 09:29:05] 2025-12-03 14:28:30,941 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:29:05] 2025-12-03 14:28:30,941 | INFO     | sum of square deviations: 1838657730.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,941 | INFO     | sum of deviations: -11104605066.000008
[2025-12-03 09:29:05] 2025-12-03 14:28:30,942 | INFO     | mean x: 1764766556.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,942 | INFO     | mean y: 2686276.861878453
[2025-12-03 09:29:05] 2025-12-03 14:28:30,958 | INFO     | intersect: 10661024323.315466
[2025-12-03 09:29:05] 2025-12-03 14:28:30,958 | INFO     | chi2: 3.932439012988496
[2025-12-03 09:29:05] 2025-12-03 14:28:30,958 | INFO     | sum of square deviations: 1690450300.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | sum of deviations: 2491191108.4999995
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | mean x: 1764766403.5
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | mean y: 2699966.0056818184
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | intersect: -2598009663.244419
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | chi2: 3.161554771185399
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | current chi2=3.161554771185399 (change=19.603209083648473 %)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | right removable region: 175
[2025-12-03 09:29:05] 2025-12-03 14:28:30,959 | INFO     | sum of square deviations: 1690450300.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | sum of deviations: -59635502742.5
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | mean x: 1764766708.5
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | mean y: 2735899.914772727
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | intersect: 62259963979.689995
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | chi2: 1.184957753506276
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | current chi2=1.184957753506276 (change=69.86710411547476 %)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,960 | INFO     | sum of square deviations: 1550429070.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | sum of deviations: -62379352862.00001
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | mean x: 1764766861.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | mean y: 2738827.567251462
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | intersect: 71005673996.65764
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | chi2: 1.125520771446801
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | current chi2=1.125520771446801 (change=5.015957900912651 %)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | left removable region: 20
[2025-12-03 09:29:05] 2025-12-03 14:28:30,961 | INFO     | sum of square deviations: 1154663510.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,978 | INFO     | sum of deviations: -34237789884.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,978 | INFO     | mean x: 1764766983.0
[2025-12-03 09:29:05] 2025-12-03 14:28:30,978 | INFO     | mean y: 2737887.6516129035
[2025-12-03 09:29:05] 2025-12-03 14:28:30,978 | INFO     | intersect: 52331161393.62574
[2025-12-03 09:29:05] 2025-12-03 14:28:30,978 | INFO     | chi2: 0.275257975373853
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | current memory leak: -29.65 B/s (using 155 data points, chi2=0.28)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | could have reported an average CPU frequency of 3795 MHz (10 samples)
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | ..............................
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . Timing measurements:
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . get job = 0 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . initial setup = 7 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . payload setup = 40 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . stage-in = 0 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . payload execution = 11044 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . stage-out = 3 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | . log creation = 0 s
[2025-12-03 09:29:05] 2025-12-03 14:28:30,979 | INFO     | ..............................
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | 
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | job summary report
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | --------------------------------------------------
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | PanDA job id: 6894238274
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | task id: 47523675
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | errors: (none)
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | pilot state: finished 
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | transexitcode: 0
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | exeerrorcode: 0
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | exeerrordiag: 
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | exitcode: 0
[2025-12-03 09:29:05] 2025-12-03 14:28:31,657 | INFO     | exitmsg: OK
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | cpuconsumptiontime: 74185 s
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | nevents: 400
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | neventsw: 0
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | pid: 358741
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | pgrp: 358741
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | corecount: 10
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | event service: False
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | sizes: {0: 2283950, 1: 2283950, 12: 2283978, 21: 2284268, 22: 2284296, 11086: 2313749, 11091: 2322803, 11110: 2322941}
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | --------------------------------------------------
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | 
[2025-12-03 09:29:05] 2025-12-03 14:28:31,658 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 09:29:05] 2025-12-03 14:28:31,729 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | job 6894238274 has completed (purged errors)
[2025-12-03 09:29:05] 2025-12-03 14:28:31,730 | INFO     | overall cleanup function is called
[2025-12-03 09:29:05] 2025-12-03 14:28:32,745 | INFO     | --- collectZombieJob: --- 10, [358741]
[2025-12-03 09:29:05] 2025-12-03 14:28:32,754 | INFO     | zombie collector waiting for pid 358741
[2025-12-03 09:29:05] 2025-12-03 14:28:32,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:29:05] 2025-12-03 14:28:32,754 | INFO     | collected zombie processes
[2025-12-03 09:29:05] 2025-12-03 14:28:32,754 | INFO     | will attempt to kill all subprocesses of pid=358741
[2025-12-03 09:29:05] 2025-12-03 14:28:34,255 | INFO     | process IDs to be killed: [358741] (in reverse order)
[2025-12-03 09:29:05] 2025-12-03 14:28:34,613 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:29:05] 2025-12-03 14:28:34,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:29:05] 2025-12-03 14:28:34,726 | INFO     | did not find any defunct processes belonging to 358741
[2025-12-03 09:29:05] 2025-12-03 14:28:34,835 | INFO     | did not find any defunct processes belonging to 358741
[2025-12-03 09:29:05] 2025-12-03 14:28:34,857 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:29:05] 2025-12-03 14:28:34,857 | INFO     | ready for new job
[2025-12-03 09:29:05] 2025-12-03 14:28:34,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:29:05] 2025-12-03 14:28:34,858 | INFO     | ***************************************
[2025-12-03 09:29:05] 2025-12-03 14:28:34,869 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:29:05] 2025-12-03 14:28:34,869 | INFO     | ***************************************
[2025-12-03 09:29:05] 2025-12-03 14:28:34,869 | INFO     | 
[2025-12-03 09:29:05] 2025-12-03 14:28:34,889 | INFO     | architecture information:
[2025-12-03 09:29:05] 2025-12-03 14:28:34,900 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:29:05] 2025-12-03 14:28:34,953 | INFO     | cat /etc/os-release:
[2025-12-03 09:29:05] NAME="CentOS Linux"
[2025-12-03 09:29:05] VERSION="7 (Core)"
[2025-12-03 09:29:05] ID="centos"
[2025-12-03 09:29:05] ID_LIKE="rhel fedora"
[2025-12-03 09:29:05] VERSION_ID="7"
[2025-12-03 09:29:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:29:05] ANSI_COLOR="0;31"
[2025-12-03 09:29:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:29:05] HOME_URL="https://www.centos.org/"
[2025-12-03 09:29:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:29:05] 
[2025-12-03 09:29:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:29:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:29:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:29:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:29:05] 
[2025-12-03 09:29:05] 2025-12-03 14:28:34,954 | INFO     | ***************************************
[2025-12-03 09:29:05] 2025-12-03 14:28:35,458 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 09:29:05] 2025-12-03 14:28:35,506 | INFO     | sufficient remaining disk space (172426788864 B)
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | INFO     | update_server=False
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:29:05] 2025-12-03 14:28:35,507 | INFO     | aborting loop
[2025-12-03 09:29:05] 2025-12-03 14:28:35,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:29:05] 2025-12-03 14:28:35,836 | INFO     | all data control threads have been joined
[2025-12-03 09:29:05] 2025-12-03 14:28:36,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:29:05] 2025-12-03 14:28:36,096 | INFO     | all job control threads have been joined
[2025-12-03 09:29:05] 2025-12-03 14:28:36,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:29:05] 2025-12-03 14:28:36,513 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:36,528 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:36,602 | INFO     | all payload control threads have been joined
[2025-12-03 09:29:05] 2025-12-03 14:28:36,683 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:36,772 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:36,842 | INFO     | [data] control thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,102 | INFO     | [job] control thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,256 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,515 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,608 | INFO     | [payload] control thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,611 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,615 | INFO     | [job] validate thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,619 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,687 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,731 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:37,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:40,019 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:29:05] 2025-12-03 14:28:49,676 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:29:05] 2025-12-03 14:28:49,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402343085888)>', '<ExcThread(monitor, started 140401851746048)>']
[2025-12-03 09:29:05] 2025-12-03 14:28:55,025 | INFO     | all workflow threads have been joined
[2025-12-03 09:29:05] 2025-12-03 14:28:55,025 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:29:05] 2025-12-03 14:28:55,025 | INFO     | traces error code: 0
[2025-12-03 09:29:05] 2025-12-03 14:28:55,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:29:05] 2025-12-03 14:29:04,024 | INFO     | PID=328450 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 09:29:05] 2025-12-03 14:29:04,024 | INFO     | .. there are 34 such processes running
[2025-12-03 09:29:05] 2025-12-03 14:29:04,025 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:29:05] 2025-12-03 14:29:04,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:29:05] 2025-12-03 14:29:04,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:29:05] 2025-12-03 14:29:04,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:29:05] 2025-12-03 14:29:04,025 | INFO     | [monitor] control thread has ended
[2025-12-03 09:29:05] 2025-12-03 14:29:04,311 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:29:05] 2025-12-03 14:29:04,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:29:05] 2025-12-03 14:29:04,326 [wrapper] pilotpid: 328450
[2025-12-03 09:29:05] 2025-12-03 14:29:04,350 [wrapper] Pilot exit status: 0
[2025-12-03 09:29:05] 2025-12-03 14:29:04,537 [wrapper] pandaids: 6894238274
[2025-12-03 09:29:05] 2025-12-03 14:29:04,964 [wrapper] cleanup supervisor_pilot 1908608 328451
[2025-12-03 09:29:05] 2025-12-03 14:29:04,992 [wrapper] Test setup, not cleaning
[2025-12-03 09:29:05] 2025-12-03 14:29:05,028 [wrapper] apfmon messages muted
[2025-12-03 09:29:05] 2025-12-03 14:29:05,043 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:29:05] 2025-12-03 14:29:05,092 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:29:05]  *** Error codes and diagnostics ***
[2025-12-03 09:29:05]     "exeErrorCode": 0,
[2025-12-03 09:29:05]     "exeErrorDiag": "",
[2025-12-03 09:29:05]     "pilotErrorCode": 0,
[2025-12-03 09:29:05]     "pilotErrorDiag": "",
[2025-12-03 09:29:05]  *** Listing of results directory ***
[2025-12-03 09:29:05] total 612808
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 19:51 queuedata.json
[2025-12-03 09:29:05] -rwx------. 1 boincer umatlas     36292 Nov 24 19:51 runpilot2-wrapper.sh
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas       100 Dec  3 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:29:05] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 06:21 run_atlas
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas       105 Dec  3 06:21 job.xml
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas 282249824 Dec  3 06:21 EVNT.47523673._000003.pool.root.1
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 06:21 start_atlas.sh
[2025-12-03 09:29:05] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 06:21 shared
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas    589941 Dec  3 06:21 input.tar.gz
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas         0 Dec  3 06:21 boinc_lockfile
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas      2613 Dec  3 06:21 pandaJob.out
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas        57 Dec  3 06:21 setup.sh.local
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas    985783 Dec  3 06:22 agis_schedconf.cvmfs.json
[2025-12-03 09:29:05] drwx------. 5 boincer umatlas      4096 Dec  3 06:22 pilot3
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 09:21 init_data.xml
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas 337529876 Dec  3 09:27 HITS.47523675._000054.pool.root.1
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas       530 Dec  3 09:27 boinc_task_state.xml
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas      1048 Dec  3 09:28 memory_monitor_summary.json
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas   1516240 Dec  3 09:28 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas    434947 Dec  3 09:28 log.47523675._000054.job.log.tgz.1
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas      7795 Dec  3 09:28 heartbeat.json
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas        95 Dec  3 09:29 pilot_heartbeat.json
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas       822 Dec  3 09:29 pilotlog.txt
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas        28 Dec  3 09:29 wrapper_checkpoint.txt
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas   1476454 Dec  3 09:29 log.47523675._000054.job.log.1
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas       357 Dec  3 09:29 output.list
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas       620 Dec  3 09:29 runtime_log
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas   1935360 Dec  3 09:29 result.tar.gz
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas       660 Dec  3 09:29 uLXNDmnSwh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR1LKDmNmurIo.diag
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas      9340 Dec  3 09:29 runtime_log.err
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 09:29 boinc_mmap_file
[2025-12-03 09:29:05] -rw-r--r--. 1 boincer umatlas     21422 Dec  3 09:29 stderr.txt
[2025-12-03 09:29:05] HITS file was successfully produced:
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas 337529876 Dec  3 09:27 shared/HITS.pool.root.1
[2025-12-03 09:29:05]  *** Contents of shared directory: ***
[2025-12-03 09:29:05] total 607752
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas 282249824 Dec  3 06:21 ATLAS.root_0
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 06:21 start_atlas.sh
[2025-12-03 09:29:05] -rw-r--r--. 2 boincer umatlas    589941 Dec  3 06:21 input.tar.gz
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas 337529876 Dec  3 09:27 HITS.pool.root.1
[2025-12-03 09:29:05] -rw-------. 1 boincer umatlas   1935360 Dec  3 09:29 result.tar.gz
09:29:27 (317931): run_atlas exited; CPU time 74501.573202
09:29:27 (317931): called boinc_finish(0)

</stderr_txt>
]]>

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