Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
04:09:30 (3188603): wrapper (7.7.26015): starting
04:09:30 (3188603): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 04:09:30] Arguments: --nthreads 4
[2025-12-03 04:09:30] Threads: 4
[2025-12-03 04:09:30] Checking for CVMFS
[2025-12-03 04:09:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 04:09:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 04:09:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 04:09:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 04:09:31] 2.13.3.0 3932 3868 64956 153591 0 69 3800333 20480000 5053 130560 0 9939945 99.863 1300773 890 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-03 04:09:31] CVMFS is ok
[2025-12-03 04:09:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 04:09:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-03 04:09:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-03 04:09:31] Further information can be found at the LHC@home message board.
[2025-12-03 04:09:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:09:31] Checking for apptainer binary...
[2025-12-03 04:09:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 04:09:31] Running /usr/bin/apptainer --version
[2025-12-03 04:09:31] apptainer version 1.4.3
[2025-12-03 04:09:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:09:31] phantom
[2025-12-03 04:09:31] apptainer works
[2025-12-03 04:09:31] Set ATHENA_PROC_NUMBER=4
[2025-12-03 04:09:31] Set ATHENA_CORE_NUMBER=4
[2025-12-03 04:09:31] Starting ATLAS job with PandaID=6895361925
[2025-12-03 04:09:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 13:32:58]  *** The last 200 lines of the pilot log: ***
[2025-12-03 13:32:58] 2025-12-03 20:32:24,808 | INFO     | time since job start (33764s) is within the limit (172800.0s)
[2025-12-03 13:32:58] 2025-12-03 20:32:24,846 | INFO     | monitor loop #2531: job 0:6895361925 is in state 'finished'
[2025-12-03 13:32:58] 2025-12-03 20:32:24,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,878 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 13:32:58] 2025-12-03 20:32:25,881 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4047.67046875
[2025-12-03 13:32:58] 2025-12-03 20:32:25,885 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6895361925/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,886 | INFO     | extracted standard info from prmon json
[2025-12-03 13:32:58] 2025-12-03 20:32:25,886 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 13:32:58] 2025-12-03 20:32:25,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 13:32:58] 2025-12-03 20:32:25,892 | INFO     | fitting pss+swap vs Time
[2025-12-03 13:32:58] 2025-12-03 20:32:25,892 | INFO     | sum of square deviations: 52438758092.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,898 | INFO     | sum of deviations: 259513684212.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,898 | INFO     | mean x: 1764777037.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,898 | INFO     | mean y: 2258035.3037974685
[2025-12-03 13:32:58] 2025-12-03 20:32:25,898 | INFO     | intersect: -8731430697.009575
[2025-12-03 13:32:58] 2025-12-03 20:32:25,898 | INFO     | chi2: 2.8350460255556613
[2025-12-03 13:32:58] 2025-12-03 20:32:25,899 | INFO     | sum of square deviations: 51029187477.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,903 | INFO     | sum of deviations: 325583458475.5001
[2025-12-03 13:32:58] 2025-12-03 20:32:25,903 | INFO     | mean x: 1764776884.5
[2025-12-03 13:32:58] 2025-12-03 20:32:25,904 | INFO     | mean y: 2265151.666058394
[2025-12-03 13:32:58] 2025-12-03 20:32:25,904 | INFO     | intersect: -11257607676.058376
[2025-12-03 13:32:58] 2025-12-03 20:32:25,904 | INFO     | chi2: 1.6239648676448086
[2025-12-03 13:32:58] 2025-12-03 20:32:25,904 | INFO     | current chi2=1.6239648676448086 (change=42.71821857542803 %)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,904 | INFO     | sum of square deviations: 49645105712.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,909 | INFO     | sum of deviations: 320664694043.00006
[2025-12-03 13:32:58] 2025-12-03 20:32:25,909 | INFO     | mean x: 1764776732.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,909 | INFO     | mean y: 2264609.681399632
[2025-12-03 13:32:58] 2025-12-03 20:32:25,910 | INFO     | intersect: -11396675582.003965
[2025-12-03 13:32:58] 2025-12-03 20:32:25,910 | INFO     | chi2: 1.6228705769028637
[2025-12-03 13:32:58] 2025-12-03 20:32:25,910 | INFO     | current chi2=1.6228705769028637 (change=0.06738389257964132 %)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,910 | INFO     | right removable region: 542
[2025-12-03 13:32:58] 2025-12-03 20:32:25,910 | INFO     | sum of square deviations: 51029187477.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,915 | INFO     | sum of deviations: 175610296428.5
[2025-12-03 13:32:58] 2025-12-03 20:32:25,915 | INFO     | mean x: 1764777189.5
[2025-12-03 13:32:58] 2025-12-03 20:32:25,915 | INFO     | mean y: 2267076.7682481753
[2025-12-03 13:32:58] 2025-12-03 20:32:25,916 | INFO     | intersect: -6070983560.781779
[2025-12-03 13:32:58] 2025-12-03 20:32:25,916 | INFO     | chi2: 1.2790173516249825
[2025-12-03 13:32:58] 2025-12-03 20:32:25,916 | INFO     | current chi2=1.2790173516249825 (change=54.88548192531376 %)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,916 | INFO     | sum of square deviations: 49645105712.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,921 | INFO     | sum of deviations: 164184845300.99997
[2025-12-03 13:32:58] 2025-12-03 20:32:25,921 | INFO     | mean x: 1764777342.0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,921 | INFO     | mean y: 2268337.5561694293
[2025-12-03 13:32:58] 2025-12-03 20:32:25,922 | INFO     | intersect: -5834151803.592666
[2025-12-03 13:32:58] 2025-12-03 20:32:25,922 | INFO     | chi2: 1.2695218833747244
[2025-12-03 13:32:58] 2025-12-03 20:32:25,922 | INFO     | current chi2=1.2695218833747244 (change=0.7424033957157993 %)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,922 | INFO     | left removable region: 20
[2025-12-03 13:32:58] 2025-12-03 20:32:25,922 | INFO     | sum of square deviations: 44105052070.5
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | sum of deviations: 199149676555.9999
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | mean x: 1764777311.5
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | mean y: 2278194.1072796937
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | intersect: -7966306226.035947
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | chi2: 0.033531271372943566
[2025-12-03 13:32:58] 2025-12-03 20:32:25,927 | INFO     | current memory leak: 4.52 B/s (using 522 data points, chi2=0.03)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | could have reported an average CPU frequency of 4004 MHz (22 samples)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | ..............................
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . Timing measurements:
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . get job = 0 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . initial setup = 2 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . payload setup = 3 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . stage-in = 0 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . payload execution = 33734 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . stage-out = 2 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | . log creation = 0 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,928 | INFO     | ..............................
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | 
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | job summary report
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | --------------------------------------------------
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | PanDA job id: 6895361925
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | task id: 47556137
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | errors: (none)
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 13:32:58] 2025-12-03 20:32:25,991 | INFO     | pilot state: finished 
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | transexitcode: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | exeerrorcode: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | exeerrordiag: 
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | exitcode: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | exitmsg: OK
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | cpuconsumptiontime: 134138 s
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | nevents: 1000
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | neventsw: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | pid: 3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | pgrp: 3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | corecount: 4
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | event service: False
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | sizes: {0: 2284151, 1: 2284350, 4: 2284612, 11: 2284640, 33742: 2324276, 33743: 2324275, 33746: 2333467, 33747: 2333523, 33752: 2333769}
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | --------------------------------------------------
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | 
[2025-12-03 13:32:58] 2025-12-03 20:32:25,992 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | job 6895361925 has completed (purged errors)
[2025-12-03 13:32:58] 2025-12-03 20:32:26,008 | INFO     | overall cleanup function is called
[2025-12-03 13:32:58] 2025-12-03 20:32:27,020 | INFO     | --- collectZombieJob: --- 10, [3199128]
[2025-12-03 13:32:58] 2025-12-03 20:32:27,020 | INFO     | zombie collector waiting for pid 3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:27,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 13:32:58] 2025-12-03 20:32:27,020 | INFO     | collected zombie processes
[2025-12-03 13:32:58] 2025-12-03 20:32:27,020 | INFO     | will attempt to kill all subprocesses of pid=3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:27,153 | INFO     | process IDs to be killed: [3199128] (in reverse order)
[2025-12-03 13:32:58] 2025-12-03 20:32:27,205 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 13:32:58] 2025-12-03 20:32:27,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 13:32:58] 2025-12-03 20:32:27,210 | INFO     | did not find any defunct processes belonging to 3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:27,213 | INFO     | did not find any defunct processes belonging to 3199128
[2025-12-03 13:32:58] 2025-12-03 20:32:27,214 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 13:32:58] 2025-12-03 20:32:27,214 | INFO     | ready for new job
[2025-12-03 13:32:58] 2025-12-03 20:32:27,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 13:32:58] 2025-12-03 20:32:27,216 | INFO     | ***************************************
[2025-12-03 13:32:58] 2025-12-03 20:32:27,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 13:32:58] 2025-12-03 20:32:27,216 | INFO     | ***************************************
[2025-12-03 13:32:58] 2025-12-03 20:32:27,216 | INFO     | 
[2025-12-03 13:32:58] 2025-12-03 20:32:27,218 | INFO     | architecture information:
[2025-12-03 13:32:58] 2025-12-03 20:32:27,218 | INFO     | executing command: cat /etc/os-release
[2025-12-03 13:32:58] 2025-12-03 20:32:27,230 | INFO     | cat /etc/os-release:
[2025-12-03 13:32:58] NAME="CentOS Linux"
[2025-12-03 13:32:58] VERSION="7 (Core)"
[2025-12-03 13:32:58] ID="centos"
[2025-12-03 13:32:58] ID_LIKE="rhel fedora"
[2025-12-03 13:32:58] VERSION_ID="7"
[2025-12-03 13:32:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 13:32:58] ANSI_COLOR="0;31"
[2025-12-03 13:32:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 13:32:58] HOME_URL="https://www.centos.org/"
[2025-12-03 13:32:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 13:32:58] 
[2025-12-03 13:32:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 13:32:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 13:32:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 13:32:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 13:32:58] 
[2025-12-03 13:32:58] 2025-12-03 20:32:27,230 | INFO     | ***************************************
[2025-12-03 13:32:58] 2025-12-03 20:32:27,733 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-12-03 13:32:58] 2025-12-03 20:32:27,745 | INFO     | sufficient remaining disk space (416483901440 B)
[2025-12-03 13:32:58] 2025-12-03 20:32:27,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 13:32:58] 2025-12-03 20:32:27,745 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 13:32:58] 2025-12-03 20:32:27,745 | INFO     | update_server=False
[2025-12-03 13:32:58] 2025-12-03 20:32:27,745 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 13:32:58] 2025-12-03 20:32:27,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 13:32:58] 2025-12-03 20:32:27,746 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 13:32:58] 2025-12-03 20:32:27,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 13:32:58] 2025-12-03 20:32:28,061 | INFO     | all data control threads have been joined
[2025-12-03 13:32:58] 2025-12-03 20:32:28,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 13:32:58] 2025-12-03 20:32:28,354 | INFO     | aborting loop
[2025-12-03 13:32:58] 2025-12-03 20:32:28,746 | INFO     | [job] retrieve thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:28,751 | INFO     | [job] queue monitor thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:28,787 | INFO     | [payload] validate_post thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:28,832 | INFO     | all payload control threads have been joined
[2025-12-03 13:32:58] 2025-12-03 20:32:29,066 | INFO     | [data] control thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,114 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,347 | INFO     | all job control threads have been joined
[2025-12-03 13:32:58] 2025-12-03 20:32:29,355 | INFO     | [job] job monitor thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,750 | INFO     | [data] copytool_out thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,837 | INFO     | [payload] control thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,844 | INFO     | [job] validate thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,916 | INFO     | [payload] failed_post thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,946 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,946 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:29,997 | INFO     | [data] copytool_in thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:30,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:30,352 | INFO     | [job] control thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:31,751 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 13:32:58] 2025-12-03 20:32:33,575 | INFO     | [monitor] cgroup control has ended
[2025-12-03 13:32:58] 2025-12-03 20:32:34,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138220732970816)>', '<ExcThread(monitor, started 138220450842368)>']
[2025-12-03 13:32:58] 2025-12-03 20:32:39,051 | INFO     | all workflow threads have been joined
[2025-12-03 13:32:58] 2025-12-03 20:32:39,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 13:32:58] 2025-12-03 20:32:39,051 | INFO     | traces error code: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:39,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | INFO     | PID=3192462 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | INFO     | .. there are 7 such processes running
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 13:32:58] 2025-12-03 20:32:58,027 | INFO     | [monitor] control thread has ended
[2025-12-03 13:32:58] 2025-12-03 20:32:58,091 [wrapper] ==== pilot stdout END ====
[2025-12-03 13:32:58] 2025-12-03 20:32:58,094 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 13:32:58] 2025-12-03 20:32:58,096 [wrapper] pilotpid: 3192462
[2025-12-03 13:32:58] 2025-12-03 20:32:58,097 [wrapper] Pilot exit status: 0
[2025-12-03 13:32:58] 2025-12-03 20:32:58,104 [wrapper] pandaids: 6895361925
[2025-12-03 13:32:58] 2025-12-03 20:32:58,136 [wrapper] cleanup supervisor_pilot 3613958 3192463
[2025-12-03 13:32:58] 2025-12-03 20:32:58,138 [wrapper] Test setup, not cleaning
[2025-12-03 13:32:58] 2025-12-03 20:32:58,140 [wrapper] apfmon messages muted
[2025-12-03 13:32:58] 2025-12-03 20:32:58,142 [wrapper] ==== wrapper stdout END ====
[2025-12-03 13:32:58] 2025-12-03 20:32:58,143 [wrapper] ==== wrapper stderr END ====
[2025-12-03 13:32:58]  *** Error codes and diagnostics ***
[2025-12-03 13:32:58]     "exeErrorCode": 0,
[2025-12-03 13:32:58]     "exeErrorDiag": "",
[2025-12-03 13:32:58]     "pilotErrorCode": 0,
[2025-12-03 13:32:58]     "pilotErrorDiag": "",
[2025-12-03 13:32:58]  *** Listing of results directory ***
[2025-12-03 13:32:58] total 1306608
[2025-12-03 13:32:58] -rwx------ 1 boinc boinc     36292 Nov 23 07:56 runpilot2-wrapper.sh
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc      5112 Nov 23 07:56 queuedata.json
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc    576529 Nov 23 07:56 pilot3.tar.gz
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc       100 Dec  3 04:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 13:32:58] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 04:09 run_atlas
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc       105 Dec  3 04:09 job.xml
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc      9721 Dec  3 04:09 init_data.xml
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc 409269860 Dec  3 04:09 EVNT.47483658._000771.pool.root.1
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc     15847 Dec  3 04:09 start_atlas.sh
[2025-12-03 13:32:58] drwxrwx--x 2 boinc boinc      4096 Dec  3 04:09 shared
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc    590095 Dec  3 04:09 input.tar.gz
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc         0 Dec  3 04:09 boinc_lockfile
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc      2786 Dec  3 04:09 pandaJob.out
[2025-12-03 13:32:58] -rw------- 1 boinc boinc    985775 Dec  3 04:09 agis_schedconf.cvmfs.json
[2025-12-03 13:32:58] drwx------ 5 boinc boinc      4096 Dec  3 04:09 pilot3
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc       532 Dec  3 13:27 boinc_task_state.xml
[2025-12-03 13:32:58] -rw------- 1 boinc boinc 912359292 Dec  3 13:31 HITS.47556137._007663.pool.root.1
[2025-12-03 13:32:58] -rw------- 1 boinc boinc        95 Dec  3 13:32 pilot_heartbeat.json
[2025-12-03 13:32:58] -rw------- 1 boinc boinc      1032 Dec  3 13:32 memory_monitor_summary.json
[2025-12-03 13:32:58] -rw------- 1 boinc boinc   1516240 Dec  3 13:32 agis_ddmendpoints.agis.ALL.json
[2025-12-03 13:32:58] -rw------- 1 boinc boinc   1365809 Dec  3 13:32 log.47556137._007663.job.log.tgz.1
[2025-12-03 13:32:58] -rw------- 1 boinc boinc      7876 Dec  3 13:32 heartbeat.json
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc      8192 Dec  3 13:32 boinc_mmap_file
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc        29 Dec  3 13:32 wrapper_checkpoint.txt
[2025-12-03 13:32:58] -rw------- 1 boinc boinc       822 Dec  3 13:32 pilotlog.txt
[2025-12-03 13:32:58] -rw------- 1 boinc boinc   4848792 Dec  3 13:32 log.47556137._007663.job.log.1
[2025-12-03 13:32:58] -rw------- 1 boinc boinc       353 Dec  3 13:32 output.list
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc       620 Dec  3 13:32 runtime_log
[2025-12-03 13:32:58] -rw------- 1 boinc boinc   6236160 Dec  3 13:32 result.tar.gz
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc      8920 Dec  3 13:32 runtime_log.err
[2025-12-03 13:32:58] -rw------- 1 boinc boinc       662 Dec  3 13:32 6coMDmagQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbaIKDmnT6IIm.diag
[2025-12-03 13:32:58] -rw-r--r-- 1 boinc boinc     21365 Dec  3 13:32 stderr.txt
[2025-12-03 13:32:58] HITS file was successfully produced:
[2025-12-03 13:32:58] -rw------- 1 boinc boinc 912359292 Dec  3 13:31 shared/HITS.pool.root.1
[2025-12-03 13:32:58]  *** Contents of shared directory: ***
[2025-12-03 13:32:58] total 1297352
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc 409269860 Dec  3 04:09 ATLAS.root_0
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc     15847 Dec  3 04:09 start_atlas.sh
[2025-12-03 13:32:58] -rw-r--r-- 2 boinc boinc    590095 Dec  3 04:09 input.tar.gz
[2025-12-03 13:32:58] -rw------- 1 boinc boinc 912359292 Dec  3 13:31 HITS.pool.root.1
[2025-12-03 13:32:58] -rw------- 1 boinc boinc   6236160 Dec  3 13:32 result.tar.gz
13:32:59 (3188603): run_atlas exited; CPU time 134307.073488
13:32:59 (3188603): called boinc_finish(0)

</stderr_txt>
]]>

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