Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:40:11 (266568): wrapper (7.7.26015): starting
03:40:11 (266568): wrapper: running run_atlas (--nthreads 11)
[2025-12-03 03:40:11] Arguments: --nthreads 11
[2025-12-03 03:40:11] Threads: 11
[2025-12-03 03:40:11] Checking for CVMFS
[2025-12-03 03:40:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 03:40:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 03:40:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 03:40:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 03:40:14] 2.13.3.0 12357 39855 295200 153586 0 198 25465659 32503808 29842 16776704 0 635479372 99.625 572728501 45340 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 03:40:14] CVMFS is ok
[2025-12-03 03:40:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 03:40:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 03:40:14] Further information can be found at the LHC@home message board.
[2025-12-03 03:40:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 03:40:14] Checking for apptainer binary...
[2025-12-03 03:40:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 03:40:14] Running /usr/bin/apptainer --version
[2025-12-03 03:40:14] apptainer version 1.4.4-1.el9
[2025-12-03 03:40:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 03:40:15] c8-7-2.aglt2.org
[2025-12-03 03:40:15] apptainer works
[2025-12-03 03:40:15] Set ATHENA_PROC_NUMBER=11
[2025-12-03 03:40:15] Set ATHENA_CORE_NUMBER=11
[2025-12-03 03:40:15] Starting ATLAS job with PandaID=6895559285
[2025-12-03 03:40:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 10:10:43]  *** The last 200 lines of the pilot log: ***
[2025-12-03 10:10:43] 2025-12-03 15:09:58,997 | INFO     | executing command: lscpu
[2025-12-03 10:10:43] 2025-12-03 15:09:59,112 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 10:10:43] 2025-12-03 15:09:59,386 | INFO     | monitor loop #1391: job 0:6895559285 is in state 'finished'
[2025-12-03 10:10:43] 2025-12-03 15:09:59,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:10:43] 2025-12-03 15:10:00,807 | INFO     | time since job start (23301s) is within the limit (172800.0s)
[2025-12-03 10:10:43] 2025-12-03 15:10:01,891 | INFO     | monitor loop #1392: job 0:6895559285 is in state 'finished'
[2025-12-03 10:10:43] 2025-12-03 15:10:01,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:10:43] 2025-12-03 15:10:02,814 | INFO     | time since job start (23303s) is within the limit (172800.0s)
[2025-12-03 10:10:43] 2025-12-03 15:10:04,396 | INFO     | monitor loop #1393: job 0:6895559285 is in state 'finished'
[2025-12-03 10:10:43] 2025-12-03 15:10:04,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:10:43] 2025-12-03 15:10:04,827 | INFO     | time since job start (23305s) is within the limit (172800.0s)
[2025-12-03 10:10:43] 2025-12-03 15:10:06,834 | INFO     | time since job start (23307s) is within the limit (172800.0s)
[2025-12-03 10:10:43] 2025-12-03 15:10:06,900 | INFO     | monitor loop #1394: job 0:6895559285 is in state 'finished'
[2025-12-03 10:10:43] 2025-12-03 15:10:06,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:10:43] 2025-12-03 15:10:08,847 | INFO     | time since job start (23309s) is within the limit (172800.0s)
[2025-12-03 10:10:43] 2025-12-03 15:10:09,405 | INFO     | monitor loop #1395: job 0:6895559285 is in state 'finished'
[2025-12-03 10:10:43] 2025-12-03 15:10:09,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,677 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 10:10:43] 2025-12-03 15:10:10,681 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3796.886882812501
[2025-12-03 10:10:43] 2025-12-03 15:10:10,695 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895559285/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,695 | INFO     | extracted standard info from prmon json
[2025-12-03 10:10:43] 2025-12-03 15:10:10,695 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 10:10:43] 2025-12-03 15:10:10,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 10:10:43] 2025-12-03 15:10:10,700 | INFO     | fitting pss+swap vs Time
[2025-12-03 10:10:43] 2025-12-03 15:10:10,700 | INFO     | sum of square deviations: 16880556430.427488
[2025-12-03 10:10:43] 2025-12-03 15:10:10,702 | INFO     | sum of deviations: 5449300073.733837
[2025-12-03 10:10:43] 2025-12-03 15:10:10,702 | INFO     | mean x: 1764763008.8496041
[2025-12-03 10:10:43] 2025-12-03 15:10:10,702 | INFO     | mean y: 3010984.556728232
[2025-12-03 10:10:43] 2025-12-03 15:10:10,702 | INFO     | intersect: -566681325.8763918
[2025-12-03 10:10:43] 2025-12-03 15:10:10,703 | INFO     | chi2: 38.17516085879041
[2025-12-03 10:10:43] 2025-12-03 15:10:10,703 | INFO     | sum of square deviations: 16221436925.59356
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | sum of deviations: 140012130560.1121
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | mean x: 1764762856.3743315
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | mean y: 3042097.449197861
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | intersect: -15229160116.67605
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | chi2: 33.98086925023225
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | current chi2=33.98086925023225 (change=10.98696512130704 %)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | right removable region: 373
[2025-12-03 10:10:43] 2025-12-03 15:10:10,705 | INFO     | sum of square deviations: 16221009315.59356
[2025-12-03 10:10:43] 2025-12-03 15:10:10,707 | INFO     | sum of deviations: -165925384625.15488
[2025-12-03 10:10:43] 2025-12-03 15:10:10,707 | INFO     | mean x: 1764763161.3743315
[2025-12-03 10:10:43] 2025-12-03 15:10:10,707 | INFO     | mean y: 3050613.3796791444
[2025-12-03 10:10:43] 2025-12-03 15:10:10,707 | INFO     | intersect: 18054887008.16233
[2025-12-03 10:10:43] 2025-12-03 15:10:10,707 | INFO     | chi2: 33.10143834418437
[2025-12-03 10:10:43] 2025-12-03 15:10:10,708 | INFO     | current chi2=33.10143834418437 (change=13.29063820680074 %)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,708 | INFO     | left removable region: 10
[2025-12-03 10:10:43] 2025-12-03 15:10:10,708 | INFO     | sum of square deviations: 14831424121.27837
[2025-12-03 10:10:43] 2025-12-03 15:10:10,709 | INFO     | sum of deviations: -149185591937.93118
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | mean x: 1764763130.9311295
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | mean y: 3124131.002754821
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | intersect: 17754435816.606724
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | chi2: 24.659372457837023
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | current memory leak: -10.06 B/s (using 363 data points, chi2=24.66)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | could have reported an average CPU frequency of 3778 MHz (16 samples)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,710 | INFO     | ..............................
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . Timing measurements:
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . get job = 0 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . initial setup = 7 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . payload setup = 65 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . stage-in = 0 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . payload execution = 23144 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . stage-out = 4 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | . log creation = 0 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,711 | INFO     | ..............................
[2025-12-03 10:10:43] 2025-12-03 15:10:10,766 | INFO     | 
[2025-12-03 10:10:43] 2025-12-03 15:10:10,766 | INFO     | job summary report
[2025-12-03 10:10:43] 2025-12-03 15:10:10,766 | INFO     | --------------------------------------------------
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | PanDA job id: 6895559285
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | task id: 47556149
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | errors: (none)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | pilot state: finished 
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | transexitcode: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | exeerrorcode: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | exeerrordiag: 
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | exitcode: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | exitmsg: OK
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | cpuconsumptiontime: 135948 s
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | nevents: 1000
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | neventsw: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | pid: 343273
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | pgrp: 343273
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | corecount: 11
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | event service: False
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | sizes: {0: 2283486, 1: 2284087, 2: 2284370, 3: 2284370, 14: 2284398, 24: 2284426, 35: 2284582, 44: 2284872, 46: 2284900, 23213: 2320563, 23214: 2320562, 23218: 232
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | --------------------------------------------------
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | 
[2025-12-03 10:10:43] 2025-12-03 15:10:10,767 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 10:10:43] 2025-12-03 15:10:10,796 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,796 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,796 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,796 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | job 6895559285 has completed (purged errors)
[2025-12-03 10:10:43] 2025-12-03 15:10:10,797 | INFO     | overall cleanup function is called
[2025-12-03 10:10:43] 2025-12-03 15:10:11,813 | INFO     | --- collectZombieJob: --- 10, [343273]
[2025-12-03 10:10:43] 2025-12-03 15:10:11,813 | INFO     | zombie collector waiting for pid 343273
[2025-12-03 10:10:43] 2025-12-03 15:10:11,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 10:10:43] 2025-12-03 15:10:11,813 | INFO     | collected zombie processes
[2025-12-03 10:10:43] 2025-12-03 15:10:11,813 | INFO     | will attempt to kill all subprocesses of pid=343273
[2025-12-03 10:10:43] 2025-12-03 15:10:12,507 | INFO     | process IDs to be killed: [343273] (in reverse order)
[2025-12-03 10:10:43] 2025-12-03 15:10:12,721 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 10:10:43] 2025-12-03 15:10:12,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 10:10:43] 2025-12-03 15:10:12,757 | INFO     | did not find any defunct processes belonging to 343273
[2025-12-03 10:10:43] 2025-12-03 15:10:12,790 | INFO     | did not find any defunct processes belonging to 343273
[2025-12-03 10:10:43] 2025-12-03 15:10:12,791 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 10:10:43] 2025-12-03 15:10:12,791 | INFO     | ready for new job
[2025-12-03 10:10:43] 2025-12-03 15:10:12,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 10:10:43] 2025-12-03 15:10:12,793 | INFO     | ***************************************
[2025-12-03 10:10:43] 2025-12-03 15:10:12,793 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 10:10:43] 2025-12-03 15:10:12,793 | INFO     | ***************************************
[2025-12-03 10:10:43] 2025-12-03 15:10:12,793 | INFO     | 
[2025-12-03 10:10:43] 2025-12-03 15:10:12,797 | INFO     | architecture information:
[2025-12-03 10:10:43] 2025-12-03 15:10:12,798 | INFO     | executing command: cat /etc/os-release
[2025-12-03 10:10:43] 2025-12-03 15:10:12,814 | INFO     | cat /etc/os-release:
[2025-12-03 10:10:43] NAME="CentOS Linux"
[2025-12-03 10:10:43] VERSION="7 (Core)"
[2025-12-03 10:10:43] ID="centos"
[2025-12-03 10:10:43] ID_LIKE="rhel fedora"
[2025-12-03 10:10:43] VERSION_ID="7"
[2025-12-03 10:10:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 10:10:43] ANSI_COLOR="0;31"
[2025-12-03 10:10:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 10:10:43] HOME_URL="https://www.centos.org/"
[2025-12-03 10:10:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 10:10:43] 
[2025-12-03 10:10:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 10:10:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 10:10:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 10:10:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 10:10:43] 
[2025-12-03 10:10:43] 2025-12-03 15:10:12,814 | INFO     | ***************************************
[2025-12-03 10:10:43] 2025-12-03 15:10:13,317 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 10:10:43] 2025-12-03 15:10:13,343 | INFO     | sufficient remaining disk space (89298829312 B)
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | INFO     | update_server=False
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:10:43] 2025-12-03 15:10:13,344 | INFO     | aborting loop
[2025-12-03 10:10:43] 2025-12-03 15:10:13,867 | INFO     | all data control threads have been joined
[2025-12-03 10:10:43] 2025-12-03 15:10:13,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 10:10:43] 2025-12-03 15:10:13,926 | INFO     | all job control threads have been joined
[2025-12-03 10:10:43] 2025-12-03 15:10:14,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 10:10:43] 2025-12-03 15:10:14,350 | INFO     | [job] job monitor thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,350 | INFO     | [job] retrieve thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,476 | INFO     | all payload control threads have been joined
[2025-12-03 10:10:43] 2025-12-03 15:10:14,563 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,756 | INFO     | [data] copytool_in thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,760 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,873 | INFO     | [data] control thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:14,932 | INFO     | [job] control thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:15,327 | INFO     | [payload] validate_post thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:15,372 | INFO     | [payload] failed_post thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:15,488 | INFO     | [payload] control thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:15,775 | INFO     | [job] validate thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:15,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:10:43] 2025-12-03 15:10:15,786 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:16,116 | INFO     | [data] copytool_out thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:16,790 | INFO     | [job] queue monitor thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:17,888 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 10:10:43] 2025-12-03 15:10:18,715 | INFO     | [monitor] cgroup control has ended
[2025-12-03 10:10:43] 2025-12-03 15:10:19,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148946986816)>', '<ExcThread(monitor, started 140147978913536)>']
[2025-12-03 10:10:43] 2025-12-03 15:10:24,538 | INFO     | all workflow threads have been joined
[2025-12-03 10:10:43] 2025-12-03 15:10:24,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 10:10:43] 2025-12-03 15:10:24,538 | INFO     | traces error code: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:24,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 10:10:43] 2025-12-03 15:10:42,744 | INFO     | PID=297806 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 10:10:43] 2025-12-03 15:10:42,745 | INFO     | .. there are 60 such processes running
[2025-12-03 10:10:43] 2025-12-03 15:10:42,746 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 10:10:43] 2025-12-03 15:10:42,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 10:10:43] 2025-12-03 15:10:42,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 10:10:43] 2025-12-03 15:10:42,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 10:10:43] 2025-12-03 15:10:42,746 | INFO     | [monitor] control thread has ended
[2025-12-03 10:10:43] 2025-12-03 15:10:42,985 [wrapper] ==== pilot stdout END ====
[2025-12-03 10:10:43] 2025-12-03 15:10:42,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 10:10:43] 2025-12-03 15:10:42,991 [wrapper] pilotpid: 297806
[2025-12-03 10:10:43] 2025-12-03 15:10:42,998 [wrapper] Pilot exit status: 0
[2025-12-03 10:10:43] 2025-12-03 15:10:43,016 [wrapper] pandaids: 6895559285
[2025-12-03 10:10:43] 2025-12-03 15:10:43,188 [wrapper] cleanup supervisor_pilot 2265485 297807
[2025-12-03 10:10:43] 2025-12-03 15:10:43,199 [wrapper] Test setup, not cleaning
[2025-12-03 10:10:43] 2025-12-03 15:10:43,223 [wrapper] apfmon messages muted
[2025-12-03 10:10:43] 2025-12-03 15:10:43,241 [wrapper] ==== wrapper stdout END ====
[2025-12-03 10:10:43] 2025-12-03 15:10:43,271 [wrapper] ==== wrapper stderr END ====
[2025-12-03 10:10:43]  *** Error codes and diagnostics ***
[2025-12-03 10:10:43]     "exeErrorCode": 0,
[2025-12-03 10:10:43]     "exeErrorDiag": "",
[2025-12-03 10:10:43]     "pilotErrorCode": 0,
[2025-12-03 10:10:43]     "pilotErrorDiag": "",
[2025-12-03 10:10:43]  *** Listing of results directory ***
[2025-12-03 10:10:43] total 1312892
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 04:50 queuedata.json
[2025-12-03 10:10:43] -rwx------. 1 boincer umatlas     36292 Nov 24 04:52 runpilot2-wrapper.sh
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas       100 Dec  3 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 10:10:43] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 03:40 run_atlas
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas       105 Dec  3 03:40 job.xml
[2025-12-03 10:10:43] -rw-r--r--. 2 boincer umatlas 408426571 Dec  3 03:40 EVNT.47483658._001301.pool.root.1
[2025-12-03 10:10:43] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 03:40 start_atlas.sh
[2025-12-03 10:10:43] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 03:40 shared
[2025-12-03 10:10:43] -rw-r--r--. 2 boincer umatlas    590107 Dec  3 03:40 input.tar.gz
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas         0 Dec  3 03:40 boinc_lockfile
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas      2785 Dec  3 03:40 pandaJob.out
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas        57 Dec  3 03:40 setup.sh.local
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas    985766 Dec  3 03:41 agis_schedconf.cvmfs.json
[2025-12-03 10:10:43] drwx------. 5 boincer umatlas      4096 Dec  3 03:41 pilot3
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas       532 Dec  3 09:39 boinc_task_state.xml
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 10:05 init_data.xml
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas 922191623 Dec  3 10:08 HITS.47556149._002878.pool.root.1
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas      1071 Dec  3 10:09 memory_monitor_summary.json
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas   1516240 Dec  3 10:09 agis_ddmendpoints.agis.ALL.json
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas   1993148 Dec  3 10:09 log.47556149._002878.job.log.tgz.1
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas      8641 Dec  3 10:10 heartbeat.json
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas        29 Dec  3 10:10 wrapper_checkpoint.txt
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 10:10 boinc_mmap_file
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas        95 Dec  3 10:10 pilot_heartbeat.json
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas       822 Dec  3 10:10 pilotlog.txt
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas   2942243 Dec  3 10:10 log.47556149._002878.job.log.1
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas       353 Dec  3 10:10 output.list
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas       620 Dec  3 10:10 runtime_log
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas   4956160 Dec  3 10:10 result.tar.gz
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas      9335 Dec  3 10:10 runtime_log.err
[2025-12-03 10:10:43] -rw-------. 1 boincer umatlas       664 Dec  3 10:10 eISMDmDQih8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEbLKDmCVI5mn.diag
[2025-12-03 10:10:43] -rw-r--r--. 1 boincer umatlas     21872 Dec  3 10:10 stderr.txt
[2025-12-03 10:10:44] HITS file was successfully produced:
[2025-12-03 10:10:44] -rw-------. 1 boincer umatlas 922191623 Dec  3 10:08 shared/HITS.pool.root.1
[2025-12-03 10:10:44]  *** Contents of shared directory: ***
[2025-12-03 10:10:44] total 1304880
[2025-12-03 10:10:44] -rw-r--r--. 2 boincer umatlas 408426571 Dec  3 03:40 ATLAS.root_0
[2025-12-03 10:10:44] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 03:40 start_atlas.sh
[2025-12-03 10:10:44] -rw-r--r--. 2 boincer umatlas    590107 Dec  3 03:40 input.tar.gz
[2025-12-03 10:10:44] -rw-------. 1 boincer umatlas 922191623 Dec  3 10:08 HITS.pool.root.1
[2025-12-03 10:10:44] -rw-------. 1 boincer umatlas   4956160 Dec  3 10:10 result.tar.gz
10:10:45 (266568): run_atlas exited; CPU time 136138.551147
10:10:45 (266568): called boinc_finish(0)

</stderr_txt>
]]>

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