Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:37:57 (3382379): wrapper (7.7.26015): starting
02:37:57 (3382379): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 02:37:57] Arguments: --nthreads 8
[2025-12-03 02:37:57] Threads: 8
[2025-12-03 02:37:57] Checking for CVMFS
[2025-12-03 02:37:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 02:37:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 02:37:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 02:37:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 02:37:59] 2.13.3.0 12357 39793 297312 153585 3 449 22026112 32503808 30197 16776704 0 635126799 99.625 571219109 45281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 02:37:59] CVMFS is ok
[2025-12-03 02:37:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 02:37:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 02:37:59] Further information can be found at the LHC@home message board.
[2025-12-03 02:37:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 02:37:59] Checking for apptainer binary...
[2025-12-03 02:37:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 02:37:59] Running /usr/bin/apptainer --version
[2025-12-03 02:37:59] apptainer version 1.4.4-1.el9
[2025-12-03 02:37:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 02:37:59] c8-7-2.aglt2.org
[2025-12-03 02:37:59] apptainer works
[2025-12-03 02:37:59] Set ATHENA_PROC_NUMBER=8
[2025-12-03 02:37:59] Set ATHENA_CORE_NUMBER=8
[2025-12-03 02:37:59] Starting ATLAS job with PandaID=6895363924
[2025-12-03 02:37:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 11:18:55]  *** The last 200 lines of the pilot log: ***
[2025-12-03 11:18:55] 2025-12-03 16:18:09,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:18:55] 2025-12-03 16:18:11,679 | INFO     | time since job start (31172s) is within the limit (172800.0s)
[2025-12-03 11:18:55] 2025-12-03 16:18:12,224 | INFO     | monitor loop #1864: job 0:6895363924 is in state 'finished'
[2025-12-03 11:18:55] 2025-12-03 16:18:12,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:18:55] 2025-12-03 16:18:13,686 | INFO     | time since job start (31174s) is within the limit (172800.0s)
[2025-12-03 11:18:55] 2025-12-03 16:18:14,729 | INFO     | monitor loop #1865: job 0:6895363924 is in state 'finished'
[2025-12-03 11:18:55] 2025-12-03 16:18:14,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:18:55] 2025-12-03 16:18:15,693 | INFO     | time since job start (31176s) is within the limit (172800.0s)
[2025-12-03 11:18:55] 2025-12-03 16:18:15,699 | INFO     | 31180s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 11:18:55] 2025-12-03 16:18:17,236 | INFO     | monitor loop #1866: job 0:6895363924 is in state 'finished'
[2025-12-03 11:18:55] 2025-12-03 16:18:17,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:18:55] 2025-12-03 16:18:17,706 | INFO     | time since job start (31178s) is within the limit (172800.0s)
[2025-12-03 11:18:55] 2025-12-03 16:18:19,713 | INFO     | time since job start (31180s) is within the limit (172800.0s)
[2025-12-03 11:18:55] 2025-12-03 16:18:19,741 | INFO     | monitor loop #1867: job 0:6895363924 is in state 'finished'
[2025-12-03 11:18:55] 2025-12-03 16:18:19,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,939 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 11:18:55] 2025-12-03 16:18:20,957 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.1623046875
[2025-12-03 11:18:55] 2025-12-03 16:18:20,969 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895363924/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,973 | INFO     | extracted standard info from prmon json
[2025-12-03 11:18:55] 2025-12-03 16:18:20,973 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 11:18:55] 2025-12-03 16:18:20,973 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 11:18:55] 2025-12-03 16:18:20,977 | INFO     | fitting pss+swap vs Time
[2025-12-03 11:18:55] 2025-12-03 16:18:20,978 | INFO     | sum of square deviations: 41132515899.70355
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | sum of deviations: -167375652853.1117
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | mean x: 1764763129.119608
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | mean y: 2787243.6411764706
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | intersect: 7183927866.980082
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | chi2: 17.97843527554405
[2025-12-03 11:18:55] 2025-12-03 16:18:20,981 | INFO     | sum of square deviations: 39934801168.958435
[2025-12-03 11:18:55] 2025-12-03 16:18:20,984 | INFO     | sum of deviations: -9061259116.305107
[2025-12-03 11:18:55] 2025-12-03 16:18:20,984 | INFO     | mean x: 1764762976.6356435
[2025-12-03 11:18:55] 2025-12-03 16:18:20,984 | INFO     | mean y: 2807388.6613861388
[2025-12-03 11:18:55] 2025-12-03 16:18:20,984 | INFO     | intersect: 403234438.304176
[2025-12-03 11:18:55] 2025-12-03 16:18:20,985 | INFO     | chi2: 14.650557975642672
[2025-12-03 11:18:55] 2025-12-03 16:18:20,985 | INFO     | current chi2=14.650557975642672 (change=18.51038340599234 %)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,985 | INFO     | right removable region: 504
[2025-12-03 11:18:55] 2025-12-03 16:18:20,985 | INFO     | sum of square deviations: 39934328177.2278
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | sum of deviations: -310044775141.3367
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | mean x: 1764763281.6336634
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | mean y: 2805362.0198019804
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | intersect: 13704191107.224533
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | chi2: 15.603394547833284
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | current chi2=15.603394547833284 (change=13.210497417100136 %)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,988 | INFO     | left removable region: 10
[2025-12-03 11:18:55] 2025-12-03 16:18:20,989 | INFO     | sum of square deviations: 37381326907.04468
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | sum of deviations: -148164987793.90277
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | mean x: 1764763251.1619434
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | mean y: 2833855.398785425
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | intersect: 6997666495.174908
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | chi2: 11.523411277257596
[2025-12-03 11:18:55] 2025-12-03 16:18:20,992 | INFO     | current memory leak: -3.96 B/s (using 494 data points, chi2=11.52)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | could have reported an average CPU frequency of 3772 MHz (20 samples)
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | ..............................
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . Timing measurements:
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . get job = 0 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . initial setup = 3 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . payload setup = 23 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . stage-in = 0 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . payload execution = 31085 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . stage-out = 4 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | . log creation = 0 s
[2025-12-03 11:18:55] 2025-12-03 16:18:20,993 | INFO     | ..............................
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | 
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | job summary report
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | --------------------------------------------------
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | PanDA job id: 6895363924
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | task id: 47556137
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | errors: (none)
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | pilot state: finished 
[2025-12-03 11:18:55] 2025-12-03 16:18:21,037 | INFO     | transexitcode: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | exeerrorcode: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | exeerrordiag: 
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | exitcode: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | exitmsg: OK
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | cpuconsumptiontime: 140718 s
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | nevents: 1000
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | neventsw: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | pid: 3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | pgrp: 3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | corecount: 8
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | event service: False
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | sizes: {0: 2284088, 1: 2284343, 11: 2284343, 20: 2284633, 22: 2284661, 31114: 2324054, 31120: 2333048, 31121: 2333104, 31143: 2333350}
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | --------------------------------------------------
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | 
[2025-12-03 11:18:55] 2025-12-03 16:18:21,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | job 6895363924 has completed (purged errors)
[2025-12-03 11:18:55] 2025-12-03 16:18:21,064 | INFO     | overall cleanup function is called
[2025-12-03 11:18:55] 2025-12-03 16:18:22,078 | INFO     | --- collectZombieJob: --- 10, [3428109]
[2025-12-03 11:18:55] 2025-12-03 16:18:22,078 | INFO     | zombie collector waiting for pid 3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:22,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 11:18:55] 2025-12-03 16:18:22,078 | INFO     | collected zombie processes
[2025-12-03 11:18:55] 2025-12-03 16:18:22,078 | INFO     | will attempt to kill all subprocesses of pid=3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:23,615 | INFO     | process IDs to be killed: [3428109] (in reverse order)
[2025-12-03 11:18:55] 2025-12-03 16:18:23,866 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 11:18:55] 2025-12-03 16:18:23,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 11:18:55] 2025-12-03 16:18:23,900 | INFO     | did not find any defunct processes belonging to 3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:23,929 | INFO     | did not find any defunct processes belonging to 3428109
[2025-12-03 11:18:55] 2025-12-03 16:18:23,930 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 11:18:55] 2025-12-03 16:18:23,930 | INFO     | ready for new job
[2025-12-03 11:18:55] 2025-12-03 16:18:23,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 11:18:55] 2025-12-03 16:18:23,932 | INFO     | ***************************************
[2025-12-03 11:18:55] 2025-12-03 16:18:23,932 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 11:18:55] 2025-12-03 16:18:23,932 | INFO     | ***************************************
[2025-12-03 11:18:55] 2025-12-03 16:18:23,932 | INFO     | 
[2025-12-03 11:18:55] 2025-12-03 16:18:23,936 | INFO     | architecture information:
[2025-12-03 11:18:55] 2025-12-03 16:18:23,937 | INFO     | executing command: cat /etc/os-release
[2025-12-03 11:18:55] 2025-12-03 16:18:23,951 | INFO     | cat /etc/os-release:
[2025-12-03 11:18:55] NAME="CentOS Linux"
[2025-12-03 11:18:55] VERSION="7 (Core)"
[2025-12-03 11:18:55] ID="centos"
[2025-12-03 11:18:55] ID_LIKE="rhel fedora"
[2025-12-03 11:18:55] VERSION_ID="7"
[2025-12-03 11:18:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 11:18:55] ANSI_COLOR="0;31"
[2025-12-03 11:18:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 11:18:55] HOME_URL="https://www.centos.org/"
[2025-12-03 11:18:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 11:18:55] 
[2025-12-03 11:18:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 11:18:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 11:18:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 11:18:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 11:18:55] 
[2025-12-03 11:18:55] 2025-12-03 16:18:23,951 | INFO     | ***************************************
[2025-12-03 11:18:55] 2025-12-03 16:18:24,460 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 11:18:55] 2025-12-03 16:18:24,495 | INFO     | sufficient remaining disk space (94439997440 B)
[2025-12-03 11:18:55] 2025-12-03 16:18:24,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 11:18:55] 2025-12-03 16:18:24,496 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 11:18:55] 2025-12-03 16:18:24,496 | INFO     | update_server=False
[2025-12-03 11:18:55] 2025-12-03 16:18:24,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 11:18:55] 2025-12-03 16:18:24,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 11:18:55] 2025-12-03 16:18:24,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 11:18:55] 2025-12-03 16:18:24,774 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 11:18:55] 2025-12-03 16:18:24,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:18:55] 2025-12-03 16:18:24,774 | INFO     | will abort loop
[2025-12-03 11:18:55] 2025-12-03 16:18:24,896 | INFO     | all data control threads have been joined
[2025-12-03 11:18:55] 2025-12-03 16:18:25,322 | INFO     | all payload control threads have been joined
[2025-12-03 11:18:55] 2025-12-03 16:18:25,364 | INFO     | all job control threads have been joined
[2025-12-03 11:18:55] 2025-12-03 16:18:25,502 | INFO     | [job] retrieve thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:25,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:25,709 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:25,779 | INFO     | [job] job monitor thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:25,902 | INFO     | [data] control thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:18:55] 2025-12-03 16:18:26,122 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,252 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,328 | INFO     | [payload] control thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,370 | INFO     | [job] control thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,407 | INFO     | [data] copytool_in thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,433 | INFO     | [job] validate thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,507 | INFO     | [data] copytool_out thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:26,983 | INFO     | [payload] failed_post thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:27,039 | INFO     | [payload] validate_post thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:27,058 | INFO     | [job] queue monitor thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:27,324 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 11:18:55] 2025-12-03 16:18:31,331 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 11:18:55] 2025-12-03 16:18:32,788 | INFO     | [monitor] cgroup control has ended
[2025-12-03 11:18:55] 2025-12-03 16:18:33,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701403629376)>', '<ExcThread(monitor, started 140700779804416)>']
[2025-12-03 11:18:55] 2025-12-03 16:18:38,791 | INFO     | all workflow threads have been joined
[2025-12-03 11:18:55] 2025-12-03 16:18:38,791 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 11:18:55] 2025-12-03 16:18:38,791 | INFO     | traces error code: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:38,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 11:18:55] 2025-12-03 16:18:53,589 | INFO     | PID=3396779 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | INFO     | .. there are 61 such processes running
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 11:18:55] 2025-12-03 16:18:53,590 | INFO     | [monitor] control thread has ended
[2025-12-03 11:18:55] 2025-12-03 16:18:53,917 [wrapper] ==== pilot stdout END ====
[2025-12-03 11:18:55] 2025-12-03 16:18:53,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 11:18:55] 2025-12-03 16:18:53,980 [wrapper] pilotpid: 3396779
[2025-12-03 11:18:55] 2025-12-03 16:18:53,992 [wrapper] Pilot exit status: 0
[2025-12-03 11:18:55] 2025-12-03 16:18:54,053 [wrapper] pandaids: 6895363924
[2025-12-03 11:18:55] 2025-12-03 16:18:54,345 [wrapper] cleanup supervisor_pilot 3193138 3396780
[2025-12-03 11:18:55] 2025-12-03 16:18:54,376 [wrapper] Test setup, not cleaning
[2025-12-03 11:18:55] 2025-12-03 16:18:54,413 [wrapper] apfmon messages muted
[2025-12-03 11:18:55] 2025-12-03 16:18:54,442 [wrapper] ==== wrapper stdout END ====
[2025-12-03 11:18:55] 2025-12-03 16:18:54,470 [wrapper] ==== wrapper stderr END ====
[2025-12-03 11:18:55]  *** Error codes and diagnostics ***
[2025-12-03 11:18:55]     "exeErrorCode": 0,
[2025-12-03 11:18:55]     "exeErrorDiag": "",
[2025-12-03 11:18:55]     "pilotErrorCode": 0,
[2025-12-03 11:18:55]     "pilotErrorDiag": "",
[2025-12-03 11:18:55]  *** Listing of results directory ***
[2025-12-03 11:18:55] total 1319420
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 10:18 pilot3.tar.gz
[2025-12-03 11:18:55] -rwx------. 1 boincer umatlas     36292 Nov 23 10:41 runpilot2-wrapper.sh
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:41 queuedata.json
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas       100 Dec  3 02:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 11:18:55] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 02:37 run_atlas
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas       105 Dec  3 02:37 job.xml
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas 413944374 Dec  3 02:37 EVNT.47483658._000799.pool.root.1
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 02:37 start_atlas.sh
[2025-12-03 11:18:55] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 02:37 shared
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas    590100 Dec  3 02:37 input.tar.gz
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas         0 Dec  3 02:37 boinc_lockfile
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas      2786 Dec  3 02:37 pandaJob.out
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas        57 Dec  3 02:38 setup.sh.local
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas    985779 Dec  3 02:38 agis_schedconf.cvmfs.json
[2025-12-03 11:18:55] drwx------. 5 boincer umatlas      4096 Dec  3 02:38 pilot3
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas       533 Dec  3 10:52 boinc_task_state.xml
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 11:09 init_data.xml
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas 921824843 Dec  3 11:17 HITS.47556137._007852.pool.root.1
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas      1072 Dec  3 11:17 memory_monitor_summary.json
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas   1516240 Dec  3 11:17 agis_ddmendpoints.agis.ALL.json
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas   1760900 Dec  3 11:17 log.47556137._007852.job.log.tgz.1
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas        95 Dec  3 11:18 pilot_heartbeat.json
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas      8631 Dec  3 11:18 heartbeat.json
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 11:18 boinc_mmap_file
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas        29 Dec  3 11:18 wrapper_checkpoint.txt
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas       823 Dec  3 11:18 pilotlog.txt
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas   3941909 Dec  3 11:18 log.47556137._007852.job.log.1
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas       353 Dec  3 11:18 output.list
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas       620 Dec  3 11:18 runtime_log
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas   5724160 Dec  3 11:18 result.tar.gz
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 11:18 runtime_log.err
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas       664 Dec  3 11:18 6IELDmQORh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMcIKDm6ZD3vm.diag
[2025-12-03 11:18:55] -rw-r--r--. 1 boincer umatlas     21791 Dec  3 11:18 stderr.txt
[2025-12-03 11:18:55] HITS file was successfully produced:
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas 921824843 Dec  3 11:17 shared/HITS.pool.root.1
[2025-12-03 11:18:55]  *** Contents of shared directory: ***
[2025-12-03 11:18:55] total 1310660
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas 413944374 Dec  3 02:37 ATLAS.root_0
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 02:37 start_atlas.sh
[2025-12-03 11:18:55] -rw-r--r--. 2 boincer umatlas    590100 Dec  3 02:37 input.tar.gz
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas 921824843 Dec  3 11:17 HITS.pool.root.1
[2025-12-03 11:18:55] -rw-------. 1 boincer umatlas   5724160 Dec  3 11:18 result.tar.gz
11:18:56 (3382379): run_atlas exited; CPU time 141179.032811
11:18:56 (3382379): called boinc_finish(0)

</stderr_txt>
]]>

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