Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:38:49 (144466): wrapper (7.7.26015): starting
00:38:49 (144466): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:38:49] Arguments: --nthreads 8
[2025-12-03 00:38:49] Threads: 8
[2025-12-03 00:38:49] Checking for CVMFS
[2025-12-03 00:38:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:38:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:38:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:38:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:38:51] 2.13.2.0 1657905 39929 248444 153582 3 435 34391100 40960000 27444 16776704 0 460784275 99.692 365572860 48345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-03 00:38:51] CVMFS is ok
[2025-12-03 00:38:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:38:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:38:51] Further information can be found at the LHC@home message board.
[2025-12-03 00:38:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:38:51] Checking for apptainer binary...
[2025-12-03 00:38:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 00:38:51] Running /usr/bin/apptainer --version
[2025-12-03 00:38:51] apptainer version 1.4.4-1.el9
[2025-12-03 00:38:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:38:52] c-208-39.aglt2.org
[2025-12-03 00:38:52] apptainer works
[2025-12-03 00:38:52] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:38:52] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:38:52] Starting ATLAS job with PandaID=6897488220
[2025-12-03 00:38:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:12:34]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:12:34] 2025-12-03 17:11:37,003 | INFO     | time since job start (41482s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:39,014 | INFO     | time since job start (41484s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:39,073 | INFO     | monitor loop #2557: job 0:6897488220 is in state 'finished'
[2025-12-03 12:12:34] 2025-12-03 17:11:39,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:12:34] 2025-12-03 17:11:41,021 | INFO     | time since job start (41486s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:41,578 | INFO     | monitor loop #2558: job 0:6897488220 is in state 'finished'
[2025-12-03 12:12:34] 2025-12-03 17:11:41,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:12:34] 2025-12-03 17:11:43,028 | INFO     | time since job start (41488s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:44,082 | INFO     | monitor loop #2559: job 0:6897488220 is in state 'finished'
[2025-12-03 12:12:34] 2025-12-03 17:11:44,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:12:34] 2025-12-03 17:11:45,035 | INFO     | time since job start (41490s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:46,590 | INFO     | monitor loop #2560: job 0:6897488220 is in state 'finished'
[2025-12-03 12:12:34] 2025-12-03 17:11:46,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:12:34] 2025-12-03 17:11:47,042 | INFO     | time since job start (41492s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:48,975 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 12:12:34] 2025-12-03 17:11:48,992 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3797.534874999999
[2025-12-03 12:12:34] 2025-12-03 17:11:49,049 | INFO     | time since job start (41494s) is within the limit (172800.0s)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,052 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897488220/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,052 | INFO     | extracted standard info from prmon json
[2025-12-03 12:12:34] 2025-12-03 17:11:49,052 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:12:34] 2025-12-03 17:11:49,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:12:34] 2025-12-03 17:11:49,079 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:12:34] 2025-12-03 17:11:49,080 | INFO     | sum of square deviations: 96209315985.47716
[2025-12-03 12:12:34] 2025-12-03 17:11:49,105 | INFO     | sum of deviations: 1349116195800.609
[2025-12-03 12:12:34] 2025-12-03 17:11:49,105 | INFO     | mean x: 1764761189.802068
[2025-12-03 12:12:34] 2025-12-03 17:11:49,106 | INFO     | mean y: 2760262.5642540623
[2025-12-03 12:12:34] 2025-12-03 17:11:49,106 | INFO     | intersect: -24743989867.55532
[2025-12-03 12:12:34] 2025-12-03 17:11:49,106 | INFO     | chi2: 24.392747436266543
[2025-12-03 12:12:34] 2025-12-03 17:11:49,106 | INFO     | sum of square deviations: 94093592579.11905
[2025-12-03 12:12:34] 2025-12-03 17:11:49,137 | INFO     | sum of deviations: 1574038830343.8433
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | mean x: 1764761037.3154762
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | mean y: 2776482.2648809524
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | intersect: -29518919128.16376
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | chi2: 20.98209851032084
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | current chi2=20.98209851032084 (change=13.982225392432976 %)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,138 | INFO     | right removable region: 671
[2025-12-03 12:12:34] 2025-12-03 17:11:49,139 | INFO     | sum of square deviations: 94092848379.1191
[2025-12-03 12:12:34] 2025-12-03 17:11:49,177 | INFO     | monitor loop #2561: job 0:6897488220 is in state 'finished'
[2025-12-03 12:12:34] 2025-12-03 17:11:49,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,178 | INFO     | sum of deviations: 1095273892392.5891
[2025-12-03 12:12:34] 2025-12-03 17:11:49,178 | INFO     | mean x: 1764761342.3154762
[2025-12-03 12:12:34] 2025-12-03 17:11:49,178 | INFO     | mean y: 2778549.5491071427
[2025-12-03 12:12:34] 2025-12-03 17:11:49,178 | INFO     | intersect: -20539664981.906223
[2025-12-03 12:12:34] 2025-12-03 17:11:49,179 | INFO     | chi2: 20.134808563889834
[2025-12-03 12:12:34] 2025-12-03 17:11:49,179 | INFO     | current chi2=20.134808563889834 (change=17.455757632476075 %)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,179 | INFO     | left removable region: 10
[2025-12-03 12:12:34] 2025-12-03 17:11:49,179 | INFO     | sum of square deviations: 89547207764.26
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | sum of deviations: 1143332949163.4575
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | mean x: 1764761311.8456883
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | mean y: 2815561.7397882
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | intersect: -22529542572.2389
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | chi2: 12.578996047461413
[2025-12-03 12:12:34] 2025-12-03 17:11:49,193 | INFO     | current memory leak: 12.77 B/s (using 661 data points, chi2=12.58)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | could have reported an average CPU frequency of 3759 MHz (26 samples)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | ..............................
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . Timing measurements:
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . get job = 0 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . initial setup = 9 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . payload setup = 44 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . stage-in = 0 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . payload execution = 41326 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . stage-out = 7 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | . log creation = 2 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,194 | INFO     | ..............................
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | 
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | job summary report
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | --------------------------------------------------
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | PanDA job id: 6897488220
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | task id: 47556161
[2025-12-03 12:12:34] 2025-12-03 17:11:49,297 | INFO     | errors: (none)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | pilot state: finished 
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | transexitcode: 0
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | exeerrorcode: 0
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | exeerrordiag: 
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | exitcode: 0
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | exitmsg: OK
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | cpuconsumptiontime: 134899 s
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | nevents: 1000
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | neventsw: 0
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | pid: 194524
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | pgrp: 194524
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | corecount: 8
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | event service: False
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 23: 2284315, 33: 2284343, 34: 2284661, 44: 2284817, 41375: 2327517, 41376: 2327516, 41383: 2336594, 41384: 2336650, 41
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | --------------------------------------------------
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | 
[2025-12-03 12:12:34] 2025-12-03 17:11:49,298 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | job 6897488220 has completed (purged errors)
[2025-12-03 12:12:34] 2025-12-03 17:11:49,347 | INFO     | overall cleanup function is called
[2025-12-03 12:12:34] 2025-12-03 17:11:50,383 | INFO     | --- collectZombieJob: --- 10, [194524]
[2025-12-03 12:12:34] 2025-12-03 17:11:50,383 | INFO     | zombie collector waiting for pid 194524
[2025-12-03 12:12:34] 2025-12-03 17:11:50,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:12:34] 2025-12-03 17:11:50,383 | INFO     | collected zombie processes
[2025-12-03 12:12:34] 2025-12-03 17:11:50,383 | INFO     | will attempt to kill all subprocesses of pid=194524
[2025-12-03 12:12:34] 2025-12-03 17:11:51,822 | INFO     | process IDs to be killed: [194524] (in reverse order)
[2025-12-03 12:12:34] 2025-12-03 17:11:52,056 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:12:34] 2025-12-03 17:11:52,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:12:34] 2025-12-03 17:11:52,079 | INFO     | did not find any defunct processes belonging to 194524
[2025-12-03 12:12:34] 2025-12-03 17:11:52,102 | INFO     | did not find any defunct processes belonging to 194524
[2025-12-03 12:12:34] 2025-12-03 17:11:52,104 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:12:34] 2025-12-03 17:11:52,104 | INFO     | ready for new job
[2025-12-03 12:12:34] 2025-12-03 17:11:52,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:12:34] 2025-12-03 17:11:52,107 | INFO     | ***************************************
[2025-12-03 12:12:34] 2025-12-03 17:11:52,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:12:34] 2025-12-03 17:11:52,107 | INFO     | ***************************************
[2025-12-03 12:12:34] 2025-12-03 17:11:52,107 | INFO     | 
[2025-12-03 12:12:34] 2025-12-03 17:11:52,112 | INFO     | architecture information:
[2025-12-03 12:12:34] 2025-12-03 17:11:52,113 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:12:34] 2025-12-03 17:11:52,134 | INFO     | cat /etc/os-release:
[2025-12-03 12:12:34] NAME="CentOS Linux"
[2025-12-03 12:12:34] VERSION="7 (Core)"
[2025-12-03 12:12:34] ID="centos"
[2025-12-03 12:12:34] ID_LIKE="rhel fedora"
[2025-12-03 12:12:34] VERSION_ID="7"
[2025-12-03 12:12:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:12:34] ANSI_COLOR="0;31"
[2025-12-03 12:12:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:12:34] HOME_URL="https://www.centos.org/"
[2025-12-03 12:12:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:12:34] 
[2025-12-03 12:12:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:12:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:12:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:12:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:12:34] 
[2025-12-03 12:12:34] 2025-12-03 17:11:52,136 | INFO     | ***************************************
[2025-12-03 12:12:34] 2025-12-03 17:11:52,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-03 12:12:34] 2025-12-03 17:11:52,750 | INFO     | sufficient remaining disk space (170672521216 B)
[2025-12-03 12:12:34] 2025-12-03 17:11:52,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:12:34] 2025-12-03 17:11:52,750 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:12:34] 2025-12-03 17:11:52,750 | INFO     | update_server=False
[2025-12-03 12:12:34] 2025-12-03 17:11:52,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:12:34] 2025-12-03 17:11:52,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:12:34] 2025-12-03 17:11:52,751 | INFO     | aborting loop
[2025-12-03 12:12:34] 2025-12-03 17:11:53,459 | INFO     | all data control threads have been joined
[2025-12-03 12:12:34] 2025-12-03 17:11:53,757 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:53,762 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:53,866 | INFO     | all job control threads have been joined
[2025-12-03 12:12:34] 2025-12-03 17:11:53,866 | INFO     | all payload control threads have been joined
[2025-12-03 12:12:34] 2025-12-03 17:11:53,971 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,131 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,234 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:12:34] 2025-12-03 17:11:54,303 | INFO     | [job] validate thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:12:34] 2025-12-03 17:11:54,341 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,407 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,467 | INFO     | [data] control thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:12:34] 2025-12-03 17:11:54,760 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,872 | INFO     | [job] control thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:54,872 | INFO     | [payload] control thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:55,016 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:55,321 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:56,260 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:11:58,639 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:12:34] 2025-12-03 17:12:24,219 | INFO     | PID=159421 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 12:12:34] 2025-12-03 17:12:24,220 | INFO     | .. there are 32 such processes running
[2025-12-03 12:12:34] 2025-12-03 17:12:24,221 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:12:34] 2025-12-03 17:12:24,221 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:12:34] 2025-12-03 17:12:24,221 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:12:34] 2025-12-03 17:12:26,891 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:12:34] 2025-12-03 17:12:27,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139942234916672)>', '<ExcThread(monitor, started 139941417830144)>']
[2025-12-03 12:12:34] 2025-12-03 17:12:27,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:12:34] 2025-12-03 17:12:27,240 | INFO     | [monitor] control thread has ended
[2025-12-03 12:12:34] 2025-12-03 17:12:32,225 | INFO     | all workflow threads have been joined
[2025-12-03 12:12:34] 2025-12-03 17:12:32,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:12:34] 2025-12-03 17:12:32,225 | INFO     | traces error code: 0
[2025-12-03 12:12:34] 2025-12-03 17:12:32,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:12:34] 2025-12-03 17:12:32,812 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:12:34] 2025-12-03 17:12:32,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:12:34] 2025-12-03 17:12:32,863 [wrapper] pilotpid: 159421
[2025-12-03 12:12:34] 2025-12-03 17:12:32,897 [wrapper] Pilot exit status: 0
[2025-12-03 12:12:34] 2025-12-03 17:12:32,993 [wrapper] pandaids: 6897488220
[2025-12-03 12:12:34] 2025-12-03 17:12:33,368 [wrapper] cleanup supervisor_pilot 2393610 159425
[2025-12-03 12:12:34] 2025-12-03 17:12:33,386 [wrapper] Test setup, not cleaning
[2025-12-03 12:12:34] 2025-12-03 17:12:33,411 [wrapper] apfmon messages muted
[2025-12-03 12:12:34] 2025-12-03 17:12:33,428 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:12:34] 2025-12-03 17:12:33,451 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:12:34]  *** Error codes and diagnostics ***
[2025-12-03 12:12:34]     "exeErrorCode": 0,
[2025-12-03 12:12:34]     "exeErrorDiag": "",
[2025-12-03 12:12:34]     "pilotErrorCode": 0,
[2025-12-03 12:12:34]     "pilotErrorDiag": "",
[2025-12-03 12:12:34]  *** Listing of results directory ***
[2025-12-03 12:12:34] total 1310024
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-12-03 12:12:34] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas       100 Dec  3 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:12:34] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 00:38 run_atlas
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas       105 Dec  3 00:38 job.xml
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas 410699308 Dec  3 00:38 EVNT.47483658._002265.pool.root.1
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:38 start_atlas.sh
[2025-12-03 12:12:34] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 00:38 shared
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas    590105 Dec  3 00:38 input.tar.gz
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas         0 Dec  3 00:38 boinc_lockfile
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas      2783 Dec  3 00:38 pandaJob.out
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas        57 Dec  3 00:38 setup.sh.local
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas    985779 Dec  3 00:40 agis_schedconf.cvmfs.json
[2025-12-03 12:12:34] drwx------. 5 boincer umatlas      4096 Dec  3 00:40 pilot3
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas       532 Dec  3 11:55 boinc_task_state.xml
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas      7176 Dec  3 12:01 init_data.xml
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas 912342770 Dec  3 12:10 HITS.47556161._002481.pool.root.1
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas      1083 Dec  3 12:11 memory_monitor_summary.json
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas   1516240 Dec  3 12:11 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas   1904228 Dec  3 12:11 log.47556161._002481.job.log.tgz.1
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas      7949 Dec  3 12:11 heartbeat.json
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas        95 Dec  3 12:12 pilot_heartbeat.json
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas        29 Dec  3 12:12 wrapper_checkpoint.txt
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 12:12 boinc_mmap_file
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas      4824 Dec  3 12:12 pilotlog.txt
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas   5353191 Dec  3 12:12 log.47556161._002481.job.log.1
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas       353 Dec  3 12:12 output.list
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas       620 Dec  3 12:12 runtime_log
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas   7280640 Dec  3 12:12 result.tar.gz
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas       665 Dec  3 12:12 SV0KDm0VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmESMKDm6xI7mn.diag
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas      9343 Dec  3 12:12 runtime_log.err
[2025-12-03 12:12:34] -rw-r--r--. 1 boincer umatlas     21804 Dec  3 12:12 stderr.txt
[2025-12-03 12:12:34] HITS file was successfully produced:
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas 912342770 Dec  3 12:10 shared/HITS.pool.root.1
[2025-12-03 12:12:34]  *** Contents of shared directory: ***
[2025-12-03 12:12:34] total 1299748
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas 410699308 Dec  3 00:38 ATLAS.root_0
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:38 start_atlas.sh
[2025-12-03 12:12:34] -rw-r--r--. 2 boincer umatlas    590105 Dec  3 00:38 input.tar.gz
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas 912342770 Dec  3 12:10 HITS.pool.root.1
[2025-12-03 12:12:34] -rw-------. 1 boincer umatlas   7280640 Dec  3 12:12 result.tar.gz
12:12:35 (144466): run_atlas exited; CPU time 135551.768885
12:12:35 (144466): called boinc_finish(0)

</stderr_txt>
]]>

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