Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:26:06 (1862768): wrapper (7.7.26015): starting
00:26:06 (1862768): wrapper: running run_atlas (--nthreads 10)
[2025-12-03 00:26:06] Arguments: --nthreads 10
[2025-12-03 00:26:06] Threads: 10
[2025-12-03 00:26:06] Checking for CVMFS
[2025-12-03 00:26:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:26:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:26:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:26:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:26:08] 2.13.3.0 17216 39572 484512 153582 1 210 30906664 32935936 43471 16776704 0 700017454 99.677 556209420 46151 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 00:26:08] CVMFS is ok
[2025-12-03 00:26:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:26:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:26:08] Further information can be found at the LHC@home message board.
[2025-12-03 00:26:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:26:08] Checking for apptainer binary...
[2025-12-03 00:26:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 00:26:08] Running /usr/bin/apptainer --version
[2025-12-03 00:26:08] apptainer version 1.4.4-1.el9
[2025-12-03 00:26:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:26:08] c7-9-14.aglt2.org
[2025-12-03 00:26:08] apptainer works
[2025-12-03 00:26:08] Set ATHENA_PROC_NUMBER=10
[2025-12-03 00:26:08] Set ATHENA_CORE_NUMBER=10
[2025-12-03 00:26:09] Starting ATLAS job with PandaID=6901172299
[2025-12-03 00:26:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:38:10]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:38:10] 2025-12-03 13:36:26,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:38:10] 2025-12-03 13:36:26,717 | INFO     | time since job start (29338s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:28,724 | INFO     | time since job start (29340s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:29,140 | INFO     | monitor loop #1732: job 0:6901172299 is in state 'finished'
[2025-12-03 08:38:10] 2025-12-03 13:36:29,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:38:10] 2025-12-03 13:36:30,745 | INFO     | time since job start (29342s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:31,671 | INFO     | monitor loop #1733: job 0:6901172299 is in state 'finished'
[2025-12-03 08:38:10] 2025-12-03 13:36:31,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:38:10] 2025-12-03 13:36:32,752 | INFO     | time since job start (29344s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:34,181 | INFO     | monitor loop #1734: job 0:6901172299 is in state 'finished'
[2025-12-03 08:38:10] 2025-12-03 13:36:34,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:38:10] 2025-12-03 13:36:34,776 | INFO     | time since job start (29346s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:36,686 | INFO     | monitor loop #1735: job 0:6901172299 is in state 'finished'
[2025-12-03 08:38:10] 2025-12-03 13:36:36,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:38:10] 2025-12-03 13:36:36,783 | INFO     | time since job start (29348s) is within the limit (172800.0s)
[2025-12-03 08:38:10] 2025-12-03 13:36:37,904 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 08:38:10] 2025-12-03 13:36:37,994 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3775.3639687500017
[2025-12-03 08:38:10] 2025-12-03 13:36:38,063 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6901172299/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,063 | INFO     | extracted standard info from prmon json
[2025-12-03 08:38:10] 2025-12-03 13:36:38,063 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:38:10] 2025-12-03 13:36:38,063 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:38:10] 2025-12-03 13:36:38,072 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:38:10] 2025-12-03 13:36:38,076 | INFO     | sum of square deviations: 33652610223.463253
[2025-12-03 08:38:10] 2025-12-03 13:36:38,079 | INFO     | sum of deviations: 118705421812.77203
[2025-12-03 08:38:10] 2025-12-03 13:36:38,080 | INFO     | mean x: 1764754382.5890985
[2025-12-03 08:38:10] 2025-12-03 13:36:38,080 | INFO     | mean y: 3585516.8406708594
[2025-12-03 08:38:10] 2025-12-03 13:36:38,080 | INFO     | intersect: -6221367376.564292
[2025-12-03 08:38:10] 2025-12-03 13:36:38,080 | INFO     | chi2: 27.465833319836424
[2025-12-03 08:38:10] 2025-12-03 13:36:38,084 | INFO     | sum of square deviations: 32605894078.37305
[2025-12-03 08:38:10] 2025-12-03 13:36:38,087 | INFO     | sum of deviations: 321303097652.0172
[2025-12-03 08:38:10] 2025-12-03 13:36:38,087 | INFO     | mean x: 1764754230.1271186
[2025-12-03 08:38:10] 2025-12-03 13:36:38,087 | INFO     | mean y: 3615034.7330508474
[2025-12-03 08:38:10] 2025-12-03 13:36:38,087 | INFO     | intersect: -17386523060.2821
[2025-12-03 08:38:10] 2025-12-03 13:36:38,088 | INFO     | chi2: 23.78946682716304
[2025-12-03 08:38:10] 2025-12-03 13:36:38,088 | INFO     | current chi2=23.78946682716304 (change=13.385235575642385 %)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,088 | INFO     | right removable region: 471
[2025-12-03 08:38:10] 2025-12-03 13:36:38,092 | INFO     | sum of square deviations: 32604849758.37303
[2025-12-03 08:38:10] 2025-12-03 13:36:38,095 | INFO     | sum of deviations: -133857098313.83087
[2025-12-03 08:38:10] 2025-12-03 13:36:38,095 | INFO     | mean x: 1764754535.1271186
[2025-12-03 08:38:10] 2025-12-03 13:36:38,095 | INFO     | mean y: 3622279.8305084747
[2025-12-03 08:38:10] 2025-12-03 13:36:38,095 | INFO     | intersect: 7248707690.709492
[2025-12-03 08:38:10] 2025-12-03 13:36:38,096 | INFO     | chi2: 22.671091802141927
[2025-12-03 08:38:10] 2025-12-03 13:36:38,096 | INFO     | current chi2=22.671091802141927 (change=17.457112849482087 %)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,096 | INFO     | left removable region: 10
[2025-12-03 08:38:10] 2025-12-03 13:36:38,096 | INFO     | sum of square deviations: 30377980194.2039
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | sum of deviations: -106502897423.73552
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | mean x: 1764754504.713666
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | mean y: 3694023.9262472885
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | intersect: 6190789636.999818
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | chi2: 14.259901245182087
[2025-12-03 08:38:10] 2025-12-03 13:36:38,103 | INFO     | current memory leak: -3.51 B/s (using 461 data points, chi2=14.26)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,104 | INFO     | could have reported an average CPU frequency of 3785 MHz (19 samples)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,118 | INFO     | ..............................
[2025-12-03 08:38:10] 2025-12-03 13:36:38,118 | INFO     | . Timing measurements:
[2025-12-03 08:38:10] 2025-12-03 13:36:38,118 | INFO     | . get job = 0 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . initial setup = 5 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . payload setup = 98 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . stage-in = 0 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . payload execution = 29117 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . stage-out = 6 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | . log creation = 2 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,119 | INFO     | ..............................
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | 
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | job summary report
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | --------------------------------------------------
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | PanDA job id: 6901172299
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | task id: 47531058
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | errors: (none)
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | pilot state: finished 
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | transexitcode: 0
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | exeerrorcode: 0
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | exeerrordiag: 
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | exitcode: 0
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | exitmsg: OK
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | cpuconsumptiontime: 119823 s
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | nevents: 1000
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | neventsw: 0
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | pid: 1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | pgrp: 1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | corecount: 10
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | event service: False
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | sizes: {0: 2284227, 1: 2284482, 2: 2284482, 13: 2284510, 23: 2284566, 34: 2284594, 38: 2285012, 45: 2285040, 29221: 2341740, 29228: 2350734, 29229: 2350790, 29274:
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | --------------------------------------------------
[2025-12-03 08:38:10] 2025-12-03 13:36:38,971 | INFO     | 
[2025-12-03 08:38:10] 2025-12-03 13:36:38,972 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-03 08:38:10] 2025-12-03 13:36:39,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:38:10] 2025-12-03 13:36:39,171 | INFO     | job 6901172299 has completed (purged errors)
[2025-12-03 08:38:10] 2025-12-03 13:36:39,172 | INFO     | overall cleanup function is called
[2025-12-03 08:38:10] 2025-12-03 13:36:40,172 | INFO     | PID=1895883 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 08:38:10] 2025-12-03 13:36:40,172 | INFO     | .. there are 63 such processes running
[2025-12-03 08:38:10] 2025-12-03 13:36:40,217 | INFO     | --- collectZombieJob: --- 10, [1961783]
[2025-12-03 08:38:10] 2025-12-03 13:36:40,217 | INFO     | zombie collector waiting for pid 1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:40,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:38:10] 2025-12-03 13:36:40,218 | INFO     | collected zombie processes
[2025-12-03 08:38:10] 2025-12-03 13:36:40,218 | INFO     | will attempt to kill all subprocesses of pid=1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:42,357 | INFO     | process IDs to be killed: [1961783] (in reverse order)
[2025-12-03 08:38:10] 2025-12-03 13:36:42,630 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:38:10] 2025-12-03 13:36:42,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:38:10] 2025-12-03 13:36:42,680 | INFO     | did not find any defunct processes belonging to 1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:42,782 | INFO     | did not find any defunct processes belonging to 1961783
[2025-12-03 08:38:10] 2025-12-03 13:36:42,805 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:38:10] 2025-12-03 13:36:42,806 | INFO     | ready for new job
[2025-12-03 08:38:10] 2025-12-03 13:36:42,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:38:10] 2025-12-03 13:36:42,808 | INFO     | ***************************************
[2025-12-03 08:38:10] 2025-12-03 13:36:42,808 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:38:10] 2025-12-03 13:36:42,808 | INFO     | ***************************************
[2025-12-03 08:38:10] 2025-12-03 13:36:42,808 | INFO     | 
[2025-12-03 08:38:10] 2025-12-03 13:36:42,826 | INFO     | architecture information:
[2025-12-03 08:38:10] 2025-12-03 13:36:42,829 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:38:10] 2025-12-03 13:36:42,904 | INFO     | cat /etc/os-release:
[2025-12-03 08:38:10] NAME="CentOS Linux"
[2025-12-03 08:38:10] VERSION="7 (Core)"
[2025-12-03 08:38:10] ID="centos"
[2025-12-03 08:38:10] ID_LIKE="rhel fedora"
[2025-12-03 08:38:10] VERSION_ID="7"
[2025-12-03 08:38:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:38:10] ANSI_COLOR="0;31"
[2025-12-03 08:38:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:38:10] HOME_URL="https://www.centos.org/"
[2025-12-03 08:38:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:38:10] 
[2025-12-03 08:38:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:38:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:38:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:38:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:38:10] 
[2025-12-03 08:38:10] 2025-12-03 13:36:42,905 | INFO     | ***************************************
[2025-12-03 08:38:10] 2025-12-03 13:36:43,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-03 08:38:10] 2025-12-03 13:36:43,468 | INFO     | sufficient remaining disk space (65743618048 B)
[2025-12-03 08:38:10] 2025-12-03 13:36:43,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:38:10] 2025-12-03 13:36:43,470 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:38:10] 2025-12-03 13:36:43,470 | INFO     | update_server=False
[2025-12-03 08:38:10] 2025-12-03 13:36:43,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:38:10] 2025-12-03 13:36:43,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:38:10] 2025-12-03 13:36:43,498 | INFO     | aborting loop
[2025-12-03 08:38:10] 2025-12-03 13:36:43,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:38:10] 2025-12-03 13:36:43,763 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:38:10] 2025-12-03 13:36:43,774 | INFO     | all payload control threads have been joined
[2025-12-03 08:38:10] 2025-12-03 13:36:44,045 | INFO     | all job control threads have been joined
[2025-12-03 08:38:10] 2025-12-03 13:36:44,475 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:44,503 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:44,526 | INFO     | all data control threads have been joined
[2025-12-03 08:38:10] 2025-12-03 13:36:44,571 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:44,780 | INFO     | [payload] control thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:44,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,051 | INFO     | [job] control thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,174 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:38:10] 2025-12-03 13:36:45,339 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,532 | INFO     | [data] control thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,699 | INFO     | [job] validate thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,700 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,723 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,749 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,790 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:45,900 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:36:49,283 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:38:10] 2025-12-03 13:37:14,749 | INFO     | PID=1895883 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 08:38:10] 2025-12-03 13:37:14,749 | INFO     | .. there are 63 such processes running
[2025-12-03 08:38:10] 2025-12-03 13:37:14,750 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:38:10] 2025-12-03 13:37:14,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:38:10] 2025-12-03 13:37:14,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:38:10] 2025-12-03 13:37:19,171 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:38:10] 2025-12-03 13:37:21,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928708056896)>', '<ExcThread(monitor, started 139928079951616)>']
[2025-12-03 08:38:10] 2025-12-03 13:37:21,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:38:10] 2025-12-03 13:37:21,806 | INFO     | [monitor] control thread has ended
[2025-12-03 08:38:10] 2025-12-03 13:37:26,123 | INFO     | all workflow threads have been joined
[2025-12-03 08:38:10] 2025-12-03 13:37:26,123 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:38:10] 2025-12-03 13:37:26,124 | INFO     | traces error code: 0
[2025-12-03 08:38:10] 2025-12-03 13:37:26,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:38:10] 2025-12-03 13:37:27,436 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:38:10] 2025-12-03 13:37:27,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:38:10] 2025-12-03 13:37:27,505 [wrapper] pilotpid: 1895883
[2025-12-03 08:38:10] 2025-12-03 13:37:27,521 [wrapper] Pilot exit status: 0
[2025-12-03 08:38:10] 2025-12-03 13:37:27,654 [wrapper] pandaids: 6901172299
[2025-12-03 08:38:10] 2025-12-03 13:37:27,988 [wrapper] cleanup supervisor_pilot 1710397 1895884
[2025-12-03 08:38:10] 2025-12-03 13:37:28,000 [wrapper] Test setup, not cleaning
[2025-12-03 08:38:10] 2025-12-03 13:37:28,035 [wrapper] apfmon messages muted
[2025-12-03 08:38:10] 2025-12-03 13:37:28,045 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:38:10] 2025-12-03 13:37:28,059 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:38:10]  *** Error codes and diagnostics ***
[2025-12-03 08:38:10]     "exeErrorCode": 0,
[2025-12-03 08:38:10]     "exeErrorDiag": "",
[2025-12-03 08:38:10]     "pilotErrorCode": 0,
[2025-12-03 08:38:10]     "pilotErrorDiag": "",
[2025-12-03 08:38:10]  *** Listing of results directory ***
[2025-12-03 08:38:10] total 1084968
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 04:19 queuedata.json
[2025-12-03 08:38:10] -rwx------. 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas       100 Dec  3 00:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:38:10] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 00:26 run_atlas
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas       105 Dec  3 00:26 job.xml
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas 378811908 Dec  3 00:26 EVNT.47531050._000554.pool.root.1
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:26 start_atlas.sh
[2025-12-03 08:38:10] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 00:26 shared
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas    590120 Dec  3 00:26 input.tar.gz
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas         0 Dec  3 00:26 boinc_lockfile
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas      2881 Dec  3 00:26 pandaJob.out
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas        57 Dec  3 00:26 setup.sh.local
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas    985779 Dec  3 00:27 agis_schedconf.cvmfs.json
[2025-12-03 08:38:10] drwx------. 5 boincer umatlas      4096 Dec  3 00:27 pilot3
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas       533 Dec  3 08:12 boinc_task_state.xml
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas 716897582 Dec  3 08:34 HITS.47531058._001695.pool.root.1
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas      1049 Dec  3 08:35 memory_monitor_summary.json
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas   1516240 Dec  3 08:35 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas   2028587 Dec  3 08:35 log.47531058._001695.job.log.tgz.1
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas     27607 Dec  3 08:36 heartbeat.json
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas        95 Dec  3 08:37 pilot_heartbeat.json
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas      4824 Dec  3 08:37 pilotlog.txt
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas   3641476 Dec  3 08:37 log.47531058._001695.job.log.1
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas       353 Dec  3 08:37 output.list
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas       620 Dec  3 08:37 runtime_log
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas   5713920 Dec  3 08:37 result.tar.gz
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas       659 Dec  3 08:37 xaeKDmyHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRzOKDm5NkGum.diag
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas      9340 Dec  3 08:37 runtime_log.err
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas        29 Dec  3 08:38 wrapper_checkpoint.txt
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas      7173 Dec  3 08:38 init_data.xml
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 08:38 boinc_mmap_file
[2025-12-03 08:38:10] -rw-r--r--. 1 boincer umatlas     21906 Dec  3 08:38 stderr.txt
[2025-12-03 08:38:10] HITS file was successfully produced:
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas 716897582 Dec  3 08:34 shared/HITS.pool.root.1
[2025-12-03 08:38:10]  *** Contents of shared directory: ***
[2025-12-03 08:38:10] total 1076216
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas 378811908 Dec  3 00:26 ATLAS.root_0
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:26 start_atlas.sh
[2025-12-03 08:38:10] -rw-r--r--. 2 boincer umatlas    590120 Dec  3 00:26 input.tar.gz
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas 716897582 Dec  3 08:34 HITS.pool.root.1
[2025-12-03 08:38:10] -rw-------. 1 boincer umatlas   5713920 Dec  3 08:37 result.tar.gz
08:38:11 (1862768): run_atlas exited; CPU time 120179.779405
08:38:11 (1862768): called boinc_finish(0)

</stderr_txt>
]]>

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