Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:19:24 (505228): wrapper (7.7.26015): starting
23:19:24 (505228): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:19:24] Arguments: --nthreads 8
[2025-12-02 23:19:24] Threads: 8
[2025-12-02 23:19:24] Checking for CVMFS
[2025-12-02 23:19:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:19:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:19:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:19:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:19:31] 2.13.3.0 7100 39578 203116 153581 3 104 38291147 40960000 43294 16776704 0 532451517 99.700 380117954 47873 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 23:19:31] CVMFS is ok
[2025-12-02 23:19:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:19:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:19:31] Further information can be found at the LHC@home message board.
[2025-12-02 23:19:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:19:31] Checking for apptainer binary...
[2025-12-02 23:19:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:19:31] Running /usr/bin/apptainer --version
[2025-12-02 23:19:31] apptainer version 1.4.4-1.el9
[2025-12-02 23:19:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:19:34] c8-6-10.aglt2.org
[2025-12-02 23:19:34] apptainer works
[2025-12-02 23:19:34] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:19:34] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:19:34] Starting ATLAS job with PandaID=6895377434
[2025-12-02 23:19:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:51:40]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:51:40] 2025-12-03 12:50:30,141 | INFO     | reaping zombies for max 20 seconds
[2025-12-03 07:51:40] 2025-12-03 12:50:30,154 | INFO     | checking for looping job (in state=finished)
[2025-12-03 07:51:40] 2025-12-03 12:50:30,154 | INFO     | using looping job limit: 7200 s
[2025-12-03 07:51:40] 2025-12-03 12:50:30,678 | INFO     | number of running child processes to parent process 577737: 1
[2025-12-03 07:51:40] 2025-12-03 12:50:30,678 | INFO     | maximum number of monitored processes: 16
[2025-12-03 07:51:40] 2025-12-03 12:50:31,065 | INFO     | time since job start (30530s) is within the limit (172800.0s)
[2025-12-03 07:51:40] 2025-12-03 12:50:33,075 | INFO     | time since job start (30532s) is within the limit (172800.0s)
[2025-12-03 07:51:40] 2025-12-03 12:50:33,183 | INFO     | monitor loop #1974: job 0:6895377434 is in state 'finished'
[2025-12-03 07:51:40] 2025-12-03 12:50:33,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:51:40] 2025-12-03 12:50:35,082 | INFO     | time since job start (30534s) is within the limit (172800.0s)
[2025-12-03 07:51:40] 2025-12-03 12:50:35,699 | INFO     | monitor loop #1975: job 0:6895377434 is in state 'finished'
[2025-12-03 07:51:40] 2025-12-03 12:50:35,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:51:40] 2025-12-03 12:50:37,089 | INFO     | time since job start (30536s) is within the limit (172800.0s)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,211 | INFO     | monitor loop #1976: job 0:6895377434 is in state 'finished'
[2025-12-03 07:51:40] 2025-12-03 12:50:38,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,808 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 07:51:40] 2025-12-03 12:50:38,813 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3794.1823046875015
[2025-12-03 07:51:40] 2025-12-03 12:50:38,826 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895377434/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,826 | INFO     | extracted standard info from prmon json
[2025-12-03 07:51:40] 2025-12-03 12:50:38,826 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:51:40] 2025-12-03 12:50:38,826 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:51:40] 2025-12-03 12:50:38,831 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:51:40] 2025-12-03 12:50:38,831 | INFO     | sum of square deviations: 38296681634.481926
[2025-12-03 07:51:40] 2025-12-03 12:50:38,834 | INFO     | sum of deviations: 1083720375974.5437
[2025-12-03 07:51:40] 2025-12-03 12:50:38,834 | INFO     | mean x: 1764751038.5060241
[2025-12-03 07:51:40] 2025-12-03 12:50:38,834 | INFO     | mean y: 2722097.485943775
[2025-12-03 07:51:40] 2025-12-03 12:50:38,834 | INFO     | intersect: -49936243299.1719
[2025-12-03 07:51:40] 2025-12-03 12:50:38,835 | INFO     | chi2: 22.944751875284652
[2025-12-03 07:51:40] 2025-12-03 12:50:38,835 | INFO     | sum of square deviations: 37154850231.870346
[2025-12-03 07:51:40] 2025-12-03 12:50:38,838 | INFO     | sum of deviations: 1240925164843.3328
[2025-12-03 07:51:40] 2025-12-03 12:50:38,838 | INFO     | mean x: 1764750886.0162272
[2025-12-03 07:51:40] 2025-12-03 12:50:38,838 | INFO     | mean y: 2743085.45841785
[2025-12-03 07:51:40] 2025-12-03 12:50:38,839 | INFO     | intersect: -58937712076.3996
[2025-12-03 07:51:40] 2025-12-03 12:50:38,839 | INFO     | chi2: 19.91600445789226
[2025-12-03 07:51:40] 2025-12-03 12:50:38,839 | INFO     | current chi2=19.91600445789226 (change=13.200175072081999 %)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,839 | INFO     | right removable region: 492
[2025-12-03 07:51:40] 2025-12-03 12:50:38,839 | INFO     | sum of square deviations: 37154544621.870346
[2025-12-03 07:51:40] 2025-12-03 12:50:38,842 | INFO     | sum of deviations: 882411072910.8439
[2025-12-03 07:51:40] 2025-12-03 12:50:38,842 | INFO     | mean x: 1764751191.0162272
[2025-12-03 07:51:40] 2025-12-03 12:50:38,842 | INFO     | mean y: 2748974.894523327
[2025-12-03 07:51:40] 2025-12-03 12:50:38,842 | INFO     | intersect: -41909647146.05484
[2025-12-03 07:51:40] 2025-12-03 12:50:38,843 | INFO     | chi2: 17.548019841585457
[2025-12-03 07:51:40] 2025-12-03 12:50:38,843 | INFO     | current chi2=17.548019841585457 (change=23.520550856391612 %)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,843 | INFO     | left removable region: 10
[2025-12-03 07:51:40] 2025-12-03 12:50:38,843 | INFO     | sum of square deviations: 34722598409.75129
[2025-12-03 07:51:40] 2025-12-03 12:50:38,846 | INFO     | sum of deviations: 890450797934.4648
[2025-12-03 07:51:40] 2025-12-03 12:50:38,846 | INFO     | mean x: 1764751160.5394192
[2025-12-03 07:51:40] 2025-12-03 12:50:38,846 | INFO     | mean y: 2800569.159751037
[2025-12-03 07:51:40] 2025-12-03 12:50:38,846 | INFO     | intersect: -45253722589.4524
[2025-12-03 07:51:40] 2025-12-03 12:50:38,846 | INFO     | chi2: 9.491568600216029
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | current memory leak: 25.64 B/s (using 482 data points, chi2=9.49)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | could have reported an average CPU frequency of 3793 MHz (20 samples)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | ..............................
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . Timing measurements:
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . get job = 0 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . initial setup = 7 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . payload setup = 61 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . stage-in = 0 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . payload execution = 30373 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . stage-out = 3 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,847 | INFO     | . log creation = 0 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,848 | INFO     | ..............................
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | 
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | job summary report
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | --------------------------------------------------
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | PanDA job id: 6895377434
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | task id: 47556137
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | errors: (none)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | pilot state: finished 
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | transexitcode: 0
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | exeerrorcode: 0
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | exeerrordiag: 
[2025-12-03 07:51:40] 2025-12-03 12:50:38,974 | INFO     | exitcode: 0
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | exitmsg: OK
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | cpuconsumptiontime: 139399 s
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | nevents: 1000
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | neventsw: 0
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | pid: 577737
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | pgrp: 577737
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | corecount: 8
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | event service: False
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | sizes: {0: 2283436, 2: 2284121, 3: 2284121, 4: 2284348, 15: 2284348, 25: 2284376, 36: 2284532, 39: 2284822, 47: 2284850, 30436: 2324256, 30437: 2324255, 30441: 233
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | --------------------------------------------------
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | 
[2025-12-03 07:51:40] 2025-12-03 12:50:38,975 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | job 6895377434 has completed (purged errors)
[2025-12-03 07:51:40] 2025-12-03 12:50:38,991 | INFO     | overall cleanup function is called
[2025-12-03 07:51:40] 2025-12-03 12:50:40,004 | INFO     | --- collectZombieJob: --- 10, [577737]
[2025-12-03 07:51:40] 2025-12-03 12:50:40,004 | INFO     | zombie collector waiting for pid 577737
[2025-12-03 07:51:40] 2025-12-03 12:50:40,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:51:40] 2025-12-03 12:50:40,004 | INFO     | collected zombie processes
[2025-12-03 07:51:40] 2025-12-03 12:50:40,004 | INFO     | will attempt to kill all subprocesses of pid=577737
[2025-12-03 07:51:40] 2025-12-03 12:50:40,682 | INFO     | process IDs to be killed: [577737] (in reverse order)
[2025-12-03 07:51:40] 2025-12-03 12:50:41,048 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:51:40] 2025-12-03 12:50:41,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:51:40] 2025-12-03 12:50:41,152 | INFO     | did not find any defunct processes belonging to 577737
[2025-12-03 07:51:40] 2025-12-03 12:50:41,228 | INFO     | did not find any defunct processes belonging to 577737
[2025-12-03 07:51:40] 2025-12-03 12:50:41,229 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:51:40] 2025-12-03 12:50:41,229 | INFO     | ready for new job
[2025-12-03 07:51:40] 2025-12-03 12:50:41,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:51:40] 2025-12-03 12:50:41,231 | INFO     | ***************************************
[2025-12-03 07:51:40] 2025-12-03 12:50:41,231 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:51:40] 2025-12-03 12:50:41,231 | INFO     | ***************************************
[2025-12-03 07:51:40] 2025-12-03 12:50:41,231 | INFO     | 
[2025-12-03 07:51:40] 2025-12-03 12:50:41,236 | INFO     | architecture information:
[2025-12-03 07:51:40] 2025-12-03 12:50:41,236 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:51:40] 2025-12-03 12:50:41,253 | INFO     | cat /etc/os-release:
[2025-12-03 07:51:40] NAME="CentOS Linux"
[2025-12-03 07:51:40] VERSION="7 (Core)"
[2025-12-03 07:51:40] ID="centos"
[2025-12-03 07:51:40] ID_LIKE="rhel fedora"
[2025-12-03 07:51:40] VERSION_ID="7"
[2025-12-03 07:51:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:51:40] ANSI_COLOR="0;31"
[2025-12-03 07:51:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:51:40] HOME_URL="https://www.centos.org/"
[2025-12-03 07:51:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:51:40] 
[2025-12-03 07:51:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:51:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:51:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:51:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:51:40] 
[2025-12-03 07:51:40] 2025-12-03 12:50:41,253 | INFO     | ***************************************
[2025-12-03 07:51:40] 2025-12-03 12:50:41,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-03 07:51:40] 2025-12-03 12:50:41,801 | INFO     | sufficient remaining disk space (170326491136 B)
[2025-12-03 07:51:40] 2025-12-03 12:50:41,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:51:40] 2025-12-03 12:50:41,802 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:51:40] 2025-12-03 12:50:41,802 | INFO     | update_server=False
[2025-12-03 07:51:40] 2025-12-03 12:50:41,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:51:40] 2025-12-03 12:50:41,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:51:40] 2025-12-03 12:50:41,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:51:40] 2025-12-03 12:50:41,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:51:40] 2025-12-03 12:50:41,803 | INFO     | aborting loop
[2025-12-03 07:51:40] 2025-12-03 12:50:41,921 | INFO     | all data control threads have been joined
[2025-12-03 07:51:40] 2025-12-03 12:50:42,808 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:42,809 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:42,879 | INFO     | all payload control threads have been joined
[2025-12-03 07:51:40] 2025-12-03 12:50:42,890 | INFO     | all job control threads have been joined
[2025-12-03 07:51:40] 2025-12-03 12:50:42,911 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:42,935 | INFO     | [data] control thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:42,957 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,060 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,367 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,679 | INFO     | [job] validate thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,742 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,795 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,814 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,885 | INFO     | [payload] control thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,896 | INFO     | [job] control thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:43,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:51:40] 2025-12-03 12:50:44,927 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:45,822 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:50:52,230 | INFO     | job.realtimelogging is not enabled
[2025-12-03 07:51:40] 2025-12-03 12:50:53,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:51:40] 2025-12-03 12:51:10,688 | INFO     | PID=545919 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 07:51:40] 2025-12-03 12:51:10,689 | INFO     | .. there are 33 such processes running
[2025-12-03 07:51:40] 2025-12-03 12:51:10,689 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:51:40] 2025-12-03 12:51:10,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:51:40] 2025-12-03 12:51:10,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:51:40] 2025-12-03 12:51:25,210 [wrapper] supervise_pilot (15 min periods counter: 35)
[2025-12-03 07:51:40] 2025-12-03 12:51:32,394 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:51:40] 2025-12-03 12:51:34,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203693954880)>', '<ExcThread(monitor, started 140203201115904)>']
[2025-12-03 07:51:40] 2025-12-03 12:51:34,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:51:40] 2025-12-03 12:51:34,832 | INFO     | [monitor] control thread has ended
[2025-12-03 07:51:40] 2025-12-03 12:51:39,107 | INFO     | all workflow threads have been joined
[2025-12-03 07:51:40] 2025-12-03 12:51:39,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:51:40] 2025-12-03 12:51:39,107 | INFO     | traces error code: 0
[2025-12-03 07:51:40] 2025-12-03 12:51:39,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:51:40] 2025-12-03 12:51:39,248 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:51:40] 2025-12-03 12:51:39,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:51:40] 2025-12-03 12:51:39,274 [wrapper] pilotpid: 545919
[2025-12-03 07:51:40] 2025-12-03 12:51:39,285 [wrapper] Pilot exit status: 0
[2025-12-03 07:51:40] 2025-12-03 12:51:39,326 [wrapper] pandaids: 6895377434
[2025-12-03 07:51:40] 2025-12-03 12:51:39,472 [wrapper] cleanup supervisor_pilot 1117580 545920
[2025-12-03 07:51:40] 2025-12-03 12:51:39,502 [wrapper] Test setup, not cleaning
[2025-12-03 07:51:40] 2025-12-03 12:51:39,531 [wrapper] apfmon messages muted
[2025-12-03 07:51:40] 2025-12-03 12:51:39,548 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:51:40] 2025-12-03 12:51:39,576 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:51:40]  *** Error codes and diagnostics ***
[2025-12-03 07:51:40]     "exeErrorCode": 0,
[2025-12-03 07:51:40]     "exeErrorDiag": "",
[2025-12-03 07:51:40]     "pilotErrorCode": 0,
[2025-12-03 07:51:40]     "pilotErrorDiag": "",
[2025-12-03 07:51:40]  *** Listing of results directory ***
[2025-12-03 07:51:40] total 1306964
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:34 pilot3.tar.gz
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:57 queuedata.json
[2025-12-03 07:51:40] -rwx------. 1 boincer umatlas     36292 Nov 23 19:57 runpilot2-wrapper.sh
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas       100 Dec  2 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:51:40] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 23:19 run_atlas
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas       105 Dec  2 23:19 job.xml
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas 410272564 Dec  2 23:19 EVNT.47483658._000970.pool.root.1
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 23:19 start_atlas.sh
[2025-12-03 07:51:40] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 23:19 shared
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 23:19 input.tar.gz
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas         0 Dec  2 23:19 boinc_lockfile
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 23:19 pandaJob.out
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas        57 Dec  2 23:19 setup.sh.local
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas    989297 Dec  2 23:21 agis_schedconf.cvmfs.json
[2025-12-03 07:51:40] drwx------. 5 boincer umatlas      4096 Dec  2 23:21 pilot3
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas       532 Dec  3 07:39 boinc_task_state.xml
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas 912479394 Dec  3 07:49 HITS.47556137._009562.pool.root.1
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas      7172 Dec  3 07:49 init_data.xml
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas      1069 Dec  3 07:50 memory_monitor_summary.json
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas   1516240 Dec  3 07:50 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas   1779677 Dec  3 07:50 log.47556137._009562.job.log.tgz.1
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas      8643 Dec  3 07:50 heartbeat.json
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas        95 Dec  3 07:51 pilot_heartbeat.json
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 07:51 boinc_mmap_file
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas        29 Dec  3 07:51 wrapper_checkpoint.txt
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas      4896 Dec  3 07:51 pilotlog.txt
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas   4051937 Dec  3 07:51 log.47556137._009562.job.log.1
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas       353 Dec  3 07:51 output.list
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas       620 Dec  3 07:51 runtime_log
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas   5847040 Dec  3 07:51 result.tar.gz
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas       664 Dec  3 07:51 VriNDmv4Zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9rIKDmPimeon.diag
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 07:51 runtime_log.err
[2025-12-03 07:51:40] -rw-r--r--. 1 boincer umatlas     21628 Dec  3 07:51 stderr.txt
[2025-12-03 07:51:40] HITS file was successfully produced:
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas 912479394 Dec  3 07:49 shared/HITS.pool.root.1
[2025-12-03 07:51:40]  *** Contents of shared directory: ***
[2025-12-03 07:51:40] total 1298068
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas 410272564 Dec  2 23:19 ATLAS.root_0
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 23:19 start_atlas.sh
[2025-12-03 07:51:40] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 23:19 input.tar.gz
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas 912479394 Dec  3 07:49 HITS.pool.root.1
[2025-12-03 07:51:40] -rw-------. 1 boincer umatlas   5847040 Dec  3 07:51 result.tar.gz
07:51:41 (505228): run_atlas exited; CPU time 139858.595141
07:51:41 (505228): called boinc_finish(0)

</stderr_txt>
]]>

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