Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:16:14 (17802): wrapper (7.7.26015): starting
23:16:14 (17802): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:16:14] Arguments: --nthreads 8
[2025-12-02 23:16:14] Threads: 8
[2025-12-02 23:16:14] Checking for CVMFS
[2025-12-02 23:16:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:16:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:16:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:16:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:16:14] 2.11.2.0 28294 127285 145372 153580 2 69 14190277 18432001 1858 130560 0 92421202 99.975 5306737 29877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:16:14] CVMFS is ok
[2025-12-02 23:16:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:16:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:16:14] Further information can be found at the LHC@home message board.
[2025-12-02 23:16:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:16:14] Checking for apptainer binary...
[2025-12-02 23:16:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:16:14] Running /usr/bin/apptainer --version
[2025-12-02 23:16:14] apptainer version 1.3.2-1.el7
[2025-12-02 23:16:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:16:15] c-206-25.aglt2.org
[2025-12-02 23:16:15] apptainer works
[2025-12-02 23:16:15] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:16:15] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:16:15] Starting ATLAS job with PandaID=6895362317
[2025-12-02 23:16:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 13:47:01]  *** The last 200 lines of the pilot log: ***
[2025-12-03 13:47:01] 2025-12-03 18:46:28,377 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 13:47:01] 2025-12-03 18:46:28,380 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-12-03 13:47:01] 2025-12-03 18:46:28,383 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895362317/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,384 | INFO     | extracted standard info from prmon json
[2025-12-03 13:47:01] 2025-12-03 18:46:28,384 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 13:47:01] 2025-12-03 18:46:28,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 13:47:01] 2025-12-03 18:46:28,395 | INFO     | fitting pss+swap vs Time
[2025-12-03 13:47:01] 2025-12-03 18:46:28,396 | INFO     | sum of square deviations: 194493111468.26996
[2025-12-03 13:47:01] 2025-12-03 18:46:28,409 | INFO     | sum of deviations: 1267854331550.2053
[2025-12-03 13:47:01] 2025-12-03 18:46:28,409 | INFO     | mean x: 1764761488.7207944
[2025-12-03 13:47:01] 2025-12-03 18:46:28,409 | INFO     | mean y: 2857432.988317757
[2025-12-03 13:47:01] 2025-12-03 18:46:28,410 | INFO     | intersect: -11501202945.996737
[2025-12-03 13:47:01] 2025-12-03 18:46:28,410 | INFO     | chi2: 6.682464668770866
[2025-12-03 13:47:01] 2025-12-03 18:46:28,411 | INFO     | sum of square deviations: 191104900933.02792
[2025-12-03 13:47:01] 2025-12-03 18:46:28,427 | INFO     | sum of deviations: 1558333073357.9688
[2025-12-03 13:47:01] 2025-12-03 18:46:28,427 | INFO     | mean x: 1764761336.2220917
[2025-12-03 13:47:01] 2025-12-03 18:46:28,427 | INFO     | mean y: 2870505.703877791
[2025-12-03 13:47:01] 2025-12-03 18:46:28,427 | INFO     | intersect: -14387581771.509287
[2025-12-03 13:47:01] 2025-12-03 18:46:28,428 | INFO     | chi2: 3.4344299046098548
[2025-12-03 13:47:01] 2025-12-03 18:46:28,428 | INFO     | current chi2=3.4344299046098548 (change=48.60534136963025 %)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,429 | INFO     | sum of square deviations: 187756272535.2767
[2025-12-03 13:47:01] 2025-12-03 18:46:28,442 | INFO     | sum of deviations: 1676246151418.1702
[2025-12-03 13:47:01] 2025-12-03 18:46:28,442 | INFO     | mean x: 1764761183.7234042
[2025-12-03 13:47:01] 2025-12-03 18:46:28,442 | INFO     | mean y: 2875873.1631205673
[2025-12-03 13:47:01] 2025-12-03 18:46:28,442 | INFO     | intersect: -15752518620.156576
[2025-12-03 13:47:01] 2025-12-03 18:46:28,443 | INFO     | chi2: 2.7547710033143127
[2025-12-03 13:47:01] 2025-12-03 18:46:28,443 | INFO     | current chi2=2.7547710033143127 (change=19.789569744407117 %)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,443 | INFO     | right removable region: 845
[2025-12-03 13:47:01] 2025-12-03 18:46:28,444 | INFO     | sum of square deviations: 191104837614.46765
[2025-12-03 13:47:01] 2025-12-03 18:46:28,456 | INFO     | sum of deviations: 1033098297047.9554
[2025-12-03 13:47:01] 2025-12-03 18:46:28,457 | INFO     | mean x: 1764761641.2209165
[2025-12-03 13:47:01] 2025-12-03 18:46:28,457 | INFO     | mean y: 2867984.0587544064
[2025-12-03 13:47:01] 2025-12-03 18:46:28,457 | INFO     | intersect: -9537299962.494892
[2025-12-03 13:47:01] 2025-12-03 18:46:28,458 | INFO     | chi2: 4.450361613674792
[2025-12-03 13:47:01] 2025-12-03 18:46:28,458 | INFO     | current chi2=4.450361613674792 (change=33.40239216717975 %)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,459 | INFO     | sum of square deviations: 187756301995.48166
[2025-12-03 13:47:01] 2025-12-03 18:46:28,480 | INFO     | sum of deviations: 964335354767.1888
[2025-12-03 13:47:01] 2025-12-03 18:46:28,480 | INFO     | mean x: 1764761793.717494
[2025-12-03 13:47:01] 2025-12-03 18:46:28,480 | INFO     | mean y: 2871115.0886524823
[2025-12-03 13:47:01] 2025-12-03 18:46:28,480 | INFO     | intersect: -9061123927.086254
[2025-12-03 13:47:01] 2025-12-03 18:46:28,481 | INFO     | chi2: 4.359271369640871
[2025-12-03 13:47:01] 2025-12-03 18:46:28,482 | INFO     | current chi2=4.359271369640871 (change=2.046805449562214 %)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,482 | INFO     | left removable region: 20
[2025-12-03 13:47:01] 2025-12-03 18:46:28,483 | INFO     | sum of square deviations: 174119278537.87878
[2025-12-03 13:47:01] 2025-12-03 18:46:28,500 | INFO     | sum of deviations: 1283766275678.3955
[2025-12-03 13:47:01] 2025-12-03 18:46:28,500 | INFO     | mean x: 1764761763.2121212
[2025-12-03 13:47:01] 2025-12-03 18:46:28,500 | INFO     | mean y: 2895578.1406060606
[2025-12-03 13:47:01] 2025-12-03 18:46:28,500 | INFO     | intersect: -13008539199.459888
[2025-12-03 13:47:01] 2025-12-03 18:46:28,501 | INFO     | chi2: 0.28008294296512204
[2025-12-03 13:47:01] 2025-12-03 18:46:28,501 | INFO     | current memory leak: 7.37 B/s (using 825 data points, chi2=0.28)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,502 | INFO     | could have reported an average CPU frequency of 2340 MHz (32 samples)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,502 | INFO     | ..............................
[2025-12-03 13:47:01] 2025-12-03 18:46:28,502 | INFO     | . Timing measurements:
[2025-12-03 13:47:01] 2025-12-03 18:46:28,502 | INFO     | . get job = 0 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . initial setup = 2 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . payload setup = 5 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . stage-in = 0 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . payload execution = 52166 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . stage-out = 4 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | . log creation = 0 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,503 | INFO     | ..............................
[2025-12-03 13:47:01] 2025-12-03 18:46:28,602 | INFO     | 
[2025-12-03 13:47:01] 2025-12-03 18:46:28,602 | INFO     | job summary report
[2025-12-03 13:47:01] 2025-12-03 18:46:28,602 | INFO     | --------------------------------------------------
[2025-12-03 13:47:01] 2025-12-03 18:46:28,602 | INFO     | PanDA job id: 6895362317
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | task id: 47556137
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | errors: (none)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | pilot state: finished 
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | transexitcode: 0
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | exeerrorcode: 0
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | exeerrordiag: 
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | exitcode: 0
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | exitmsg: OK
[2025-12-03 13:47:01] 2025-12-03 18:46:28,603 | INFO     | cpuconsumptiontime: 408837 s
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | nevents: 1000
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | neventsw: 0
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | pid: 27963
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | pgrp: 27963
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | corecount: 8
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | event service: False
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | sizes: {0: 2284315, 1: 2284315, 4: 2284605, 11: 2284633, 52174: 2333872, 52175: 2333871, 52179: 2343049, 52182: 2343105, 52187: 2343351}
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | --------------------------------------------------
[2025-12-03 13:47:01] 2025-12-03 18:46:28,604 | INFO     | 
[2025-12-03 13:47:01] 2025-12-03 18:46:28,605 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 13:47:01] 2025-12-03 18:46:28,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,625 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,625 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,625 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,625 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,626 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,626 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,626 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,626 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,626 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 13:47:01] 2025-12-03 18:46:28,627 | INFO     | job 6895362317 has completed (purged errors)
[2025-12-03 13:47:01] 2025-12-03 18:46:28,627 | INFO     | overall cleanup function is called
[2025-12-03 13:47:01] 2025-12-03 18:46:29,401 | INFO     | PID=21470 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 13:47:01] 2025-12-03 18:46:29,401 | INFO     | .. there are 3 such processes running
[2025-12-03 13:47:01] 2025-12-03 18:46:29,647 | INFO     | --- collectZombieJob: --- 10, [27963]
[2025-12-03 13:47:01] 2025-12-03 18:46:29,647 | INFO     | zombie collector waiting for pid 27963
[2025-12-03 13:47:01] 2025-12-03 18:46:29,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 13:47:01] 2025-12-03 18:46:29,647 | INFO     | collected zombie processes
[2025-12-03 13:47:01] 2025-12-03 18:46:29,648 | INFO     | will attempt to kill all subprocesses of pid=27963
[2025-12-03 13:47:01] 2025-12-03 18:46:29,820 | INFO     | process IDs to be killed: [27963] (in reverse order)
[2025-12-03 13:47:01] 2025-12-03 18:46:29,902 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 13:47:01] 2025-12-03 18:46:29,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 13:47:01] 2025-12-03 18:46:29,906 | INFO     | did not find any defunct processes belonging to 27963
[2025-12-03 13:47:01] 2025-12-03 18:46:29,908 | INFO     | did not find any defunct processes belonging to 27963
[2025-12-03 13:47:01] 2025-12-03 18:46:29,909 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 13:47:01] 2025-12-03 18:46:29,909 | INFO     | ready for new job
[2025-12-03 13:47:01] 2025-12-03 18:46:29,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 13:47:01] 2025-12-03 18:46:29,912 | INFO     | ***************************************
[2025-12-03 13:47:01] 2025-12-03 18:46:29,912 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 13:47:01] 2025-12-03 18:46:29,913 | INFO     | ***************************************
[2025-12-03 13:47:01] 2025-12-03 18:46:29,913 | INFO     | 
[2025-12-03 13:47:01] 2025-12-03 18:46:29,913 | INFO     | architecture information:
[2025-12-03 13:47:01] 2025-12-03 18:46:29,914 | INFO     | executing command: cat /etc/os-release
[2025-12-03 13:47:01] 2025-12-03 18:46:29,924 | INFO     | cat /etc/os-release:
[2025-12-03 13:47:01] NAME="CentOS Linux"
[2025-12-03 13:47:01] VERSION="7 (Core)"
[2025-12-03 13:47:01] ID="centos"
[2025-12-03 13:47:01] ID_LIKE="rhel fedora"
[2025-12-03 13:47:01] VERSION_ID="7"
[2025-12-03 13:47:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 13:47:01] ANSI_COLOR="0;31"
[2025-12-03 13:47:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 13:47:01] HOME_URL="https://www.centos.org/"
[2025-12-03 13:47:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 13:47:01] 
[2025-12-03 13:47:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 13:47:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 13:47:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 13:47:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 13:47:01] 
[2025-12-03 13:47:01] 2025-12-03 18:46:29,924 | INFO     | ***************************************
[2025-12-03 13:47:01] 2025-12-03 18:46:30,428 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 13:47:01] 2025-12-03 18:46:30,462 | INFO     | sufficient remaining disk space (26302480384 B)
[2025-12-03 13:47:01] 2025-12-03 18:46:30,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 13:47:01] 2025-12-03 18:46:30,462 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 13:47:01] 2025-12-03 18:46:30,463 | INFO     | update_server=False
[2025-12-03 13:47:01] 2025-12-03 18:46:30,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 13:47:01] 2025-12-03 18:46:30,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 13:47:01] 2025-12-03 18:46:30,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 13:47:01] 2025-12-03 18:46:30,482 | INFO     | all data control threads have been joined
[2025-12-03 13:47:01] 2025-12-03 18:46:30,586 | INFO     | all payload control threads have been joined
[2025-12-03 13:47:01] 2025-12-03 18:46:31,238 | INFO     | all job control threads have been joined
[2025-12-03 13:47:01] 2025-12-03 18:46:31,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 13:47:01] 2025-12-03 18:46:31,298 | INFO     | aborting loop
[2025-12-03 13:47:01] 2025-12-03 18:46:31,468 | INFO     | [job] retrieve thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:31,471 | INFO     | [job] queue monitor thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:31,488 | INFO     | [data] control thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:31,591 | INFO     | [payload] control thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:31,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 13:47:01] 2025-12-03 18:46:31,695 | INFO     | [job] validate thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:31,696 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,000 | INFO     | [data] copytool_in thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,009 | INFO     | [payload] validate_post thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,034 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,231 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,243 | INFO     | [job] control thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:32,305 | INFO     | [job] job monitor thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:33,023 | INFO     | [payload] failed_post thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:33,699 | INFO     | [data] copytool_out thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:34,469 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:39,695 | INFO     | [monitor] cgroup control has ended
[2025-12-03 13:47:01] 2025-12-03 18:46:40,766 | INFO     | job.realtimelogging is not enabled
[2025-12-03 13:47:01] 2025-12-03 18:46:41,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 13:47:01] 2025-12-03 18:46:41,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803834763072)>', '<ExcThread(monitor, started 139803249071872)>']
[2025-12-03 13:47:01] 2025-12-03 18:46:46,958 | INFO     | all workflow threads have been joined
[2025-12-03 13:47:01] 2025-12-03 18:46:46,958 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 13:47:01] 2025-12-03 18:46:46,958 | INFO     | traces error code: 0
[2025-12-03 13:47:01] 2025-12-03 18:46:46,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 13:47:01] 2025-12-03 18:47:01,609 | INFO     | PID=21470 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 13:47:01] 2025-12-03 18:47:01,609 | INFO     | .. there are 3 such processes running
[2025-12-03 13:47:01] 2025-12-03 18:47:01,610 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 13:47:01] 2025-12-03 18:47:01,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 13:47:01] 2025-12-03 18:47:01,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 13:47:01] 2025-12-03 18:47:01,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 13:47:01] 2025-12-03 18:47:01,610 | INFO     | [monitor] control thread has ended
[2025-12-03 13:47:01] 2025-12-03 18:47:01,726 [wrapper] ==== pilot stdout END ====
[2025-12-03 13:47:01] 2025-12-03 18:47:01,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 13:47:01] 2025-12-03 18:47:01,731 [wrapper] pilotpid: 21470
[2025-12-03 13:47:01] 2025-12-03 18:47:01,734 [wrapper] Pilot exit status: 0
[2025-12-03 13:47:01] 2025-12-03 18:47:01,745 [wrapper] pandaids: 6895362317
[2025-12-03 13:47:01] 2025-12-03 18:47:01,787 [wrapper] cleanup supervisor_pilot   312 21471
[2025-12-03 13:47:01] 2025-12-03 18:47:01,790 [wrapper] Test setup, not cleaning
[2025-12-03 13:47:01] 2025-12-03 18:47:01,793 [wrapper] apfmon messages muted
[2025-12-03 13:47:01] 2025-12-03 18:47:01,796 [wrapper] ==== wrapper stdout END ====
[2025-12-03 13:47:01] 2025-12-03 18:47:01,798 [wrapper] ==== wrapper stderr END ====
[2025-12-03 13:47:01]  *** Error codes and diagnostics ***
[2025-12-03 13:47:01]     "exeErrorCode": 0,
[2025-12-03 13:47:01]     "exeErrorDiag": "",
[2025-12-03 13:47:01]     "pilotErrorCode": 0,
[2025-12-03 13:47:01]     "pilotErrorDiag": "",
[2025-12-03 13:47:01]  *** Listing of results directory ***
[2025-12-03 13:47:01] total 1325284
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-12-03 13:47:01] -rwx------ 1 boincer umatlas     36292 Nov 23 10:03 runpilot2-wrapper.sh
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 10:03 queuedata.json
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas       100 Dec  2 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 13:47:01] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 23:16 run_atlas
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas       105 Dec  2 23:16 job.xml
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas 413450033 Dec  2 23:16 EVNT.47483658._000783.pool.root.1
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 23:16 start_atlas.sh
[2025-12-03 13:47:01] drwxrwx--x 2 boincer umatlas      4096 Dec  2 23:16 shared
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas    590102 Dec  2 23:16 input.tar.gz
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas         0 Dec  2 23:16 boinc_lockfile
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas      2786 Dec  2 23:16 pandaJob.out
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas        57 Dec  2 23:16 setup.sh.local
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas    989300 Dec  2 23:16 agis_schedconf.cvmfs.json
[2025-12-03 13:47:01] drwx------ 5 boincer umatlas      4096 Dec  2 23:16 pilot3
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas       533 Dec  3 13:33 boinc_task_state.xml
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas      5953 Dec  3 13:38 init_data.xml
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas 920988078 Dec  3 13:45 HITS.47556137._007716.pool.root.1
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas        95 Dec  3 13:46 pilot_heartbeat.json
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas      1066 Dec  3 13:46 memory_monitor_summary.json
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas   1516240 Dec  3 13:46 agis_ddmendpoints.agis.ALL.json
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas   2097688 Dec  3 13:46 log.47556137._007716.job.log.tgz.1
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas      8680 Dec  3 13:46 heartbeat.json
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas        29 Dec  3 13:46 wrapper_checkpoint.txt
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas      8192 Dec  3 13:46 boinc_mmap_file
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas       820 Dec  3 13:47 pilotlog.txt
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas   7270076 Dec  3 13:47 log.47556137._007716.job.log.1
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas       353 Dec  3 13:47 output.list
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas       620 Dec  3 13:47 runtime_log
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas   9390080 Dec  3 13:47 result.tar.gz
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas      9343 Dec  3 13:47 runtime_log.err
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas       670 Dec  3 13:47 6QfMDmsnQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJbIKDm7cOESn.diag
[2025-12-03 13:47:01] -rw-r--r-- 1 boincer umatlas     21358 Dec  3 13:47 stderr.txt
[2025-12-03 13:47:01] HITS file was successfully produced:
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas 920988078 Dec  3 13:45 shared/HITS.pool.root.1
[2025-12-03 13:47:01]  *** Contents of shared directory: ***
[2025-12-03 13:47:01] total 1312940
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas 413450033 Dec  2 23:16 ATLAS.root_0
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 23:16 start_atlas.sh
[2025-12-03 13:47:01] -rw-r--r-- 2 boincer umatlas    590102 Dec  2 23:16 input.tar.gz
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas 920988078 Dec  3 13:45 HITS.pool.root.1
[2025-12-03 13:47:01] -rw------- 1 boincer umatlas   9390080 Dec  3 13:47 result.tar.gz
13:47:03 (17802): run_atlas exited; CPU time 400717.597673
13:47:03 (17802): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN