Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:27:07 (27408): wrapper (7.7.26015): starting
23:27:07 (27408): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 23:27:07] Arguments: --nthreads 12
[2025-12-02 23:27:07] Threads: 12
[2025-12-02 23:27:07] Checking for CVMFS
[2025-12-02 23:27:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:27:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:27:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:27:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:27:08] 2.11.2.0 2913 297281 98440 153581 1 81 16433025 20275201 1 130560 1 134313600 99.963 17844234 14046 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 23:27:08] CVMFS is ok
[2025-12-02 23:27:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:27:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:27:08] Further information can be found at the LHC@home message board.
[2025-12-02 23:27:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:27:08] Checking for apptainer binary...
[2025-12-02 23:27:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 23:27:08] Running /usr/bin/apptainer --version
[2025-12-02 23:27:08] apptainer version 1.3.2-1.el7
[2025-12-02 23:27:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:27:09] c-205-6.aglt2.org
[2025-12-02 23:27:09] apptainer works
[2025-12-02 23:27:09] Set ATHENA_PROC_NUMBER=12
[2025-12-02 23:27:09] Set ATHENA_CORE_NUMBER=12
[2025-12-02 23:27:09] Starting ATLAS job with PandaID=6895383102
[2025-12-02 23:27:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:42:21]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:42:21] 2025-12-03 11:41:45,763 | INFO     | time since job start (26061s) is within the limit (172800.0s)
[2025-12-03 06:42:21] 2025-12-03 11:41:45,793 | INFO     | monitor loop #1950: job 0:6895383102 is in state 'finished'
[2025-12-03 06:42:21] 2025-12-03 11:41:45,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:42:21] 2025-12-03 11:41:47,765 | INFO     | time since job start (26063s) is within the limit (172800.0s)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,039 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 06:42:21] 2025-12-03 11:41:48,043 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,046 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895383102/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,047 | INFO     | extracted standard info from prmon json
[2025-12-03 06:42:21] 2025-12-03 11:41:48,047 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:42:21] 2025-12-03 11:41:48,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:42:21] 2025-12-03 11:41:48,054 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:42:21] 2025-12-03 11:41:48,055 | INFO     | sum of square deviations: 24141256865.110153
[2025-12-03 06:42:21] 2025-12-03 11:41:48,060 | INFO     | sum of deviations: 329957853466.6819
[2025-12-03 06:42:21] 2025-12-03 11:41:48,060 | INFO     | mean x: 1764749066.2365339
[2025-12-03 06:42:21] 2025-12-03 11:41:48,060 | INFO     | mean y: 3425737.3793911007
[2025-12-03 06:42:21] 2025-12-03 11:41:48,060 | INFO     | intersect: -24116810299.05868
[2025-12-03 06:42:21] 2025-12-03 11:41:48,061 | INFO     | chi2: 6.511460542574109
[2025-12-03 06:42:21] 2025-12-03 11:41:48,061 | INFO     | sum of square deviations: 23303123117.32684
[2025-12-03 06:42:21] 2025-12-03 11:41:48,065 | INFO     | sum of deviations: 504133953218.2276
[2025-12-03 06:42:21] 2025-12-03 11:41:48,065 | INFO     | mean x: 1764748913.7393365
[2025-12-03 06:42:21] 2025-12-03 11:41:48,065 | INFO     | mean y: 3457418.383886256
[2025-12-03 06:42:21] 2025-12-03 11:41:48,065 | INFO     | intersect: -38174680414.9728
[2025-12-03 06:42:21] 2025-12-03 11:41:48,066 | INFO     | chi2: 3.1235560180263207
[2025-12-03 06:42:21] 2025-12-03 11:41:48,066 | INFO     | current chi2=3.1235560180263207 (change=52.02987106189977 %)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,066 | INFO     | sum of square deviations: 22484617644.537235
[2025-12-03 06:42:21] 2025-12-03 11:41:48,070 | INFO     | sum of deviations: 555742541163.3954
[2025-12-03 06:42:21] 2025-12-03 11:41:48,070 | INFO     | mean x: 1764748761.2422063
[2025-12-03 06:42:21] 2025-12-03 11:41:48,070 | INFO     | mean y: 3466990.3525179857
[2025-12-03 06:42:21] 2025-12-03 11:41:48,071 | INFO     | intersect: -43615062645.88418
[2025-12-03 06:42:21] 2025-12-03 11:41:48,071 | INFO     | chi2: 2.608744287687003
[2025-12-03 06:42:21] 2025-12-03 11:41:48,071 | INFO     | current chi2=2.608744287687003 (change=16.481591089395977 %)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,071 | INFO     | right removable region: 416
[2025-12-03 06:42:21] 2025-12-03 11:41:48,072 | INFO     | sum of square deviations: 23303061507.32686
[2025-12-03 06:42:21] 2025-12-03 11:41:48,076 | INFO     | sum of deviations: 183287198529.52133
[2025-12-03 06:42:21] 2025-12-03 11:41:48,076 | INFO     | mean x: 1764749218.7393365
[2025-12-03 06:42:21] 2025-12-03 11:41:48,076 | INFO     | mean y: 3452351.0047393367
[2025-12-03 06:42:21] 2025-12-03 11:41:48,076 | INFO     | intersect: -13876953032.991465
[2025-12-03 06:42:21] 2025-12-03 11:41:48,076 | INFO     | chi2: 4.071294547591312
[2025-12-03 06:42:21] 2025-12-03 11:41:48,077 | INFO     | current chi2=4.071294547591312 (change=37.4749409756563 %)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,077 | INFO     | sum of square deviations: 22484494424.537235
[2025-12-03 06:42:21] 2025-12-03 11:41:48,081 | INFO     | sum of deviations: 148947704516.48392
[2025-12-03 06:42:21] 2025-12-03 11:41:48,081 | INFO     | mean x: 1764749371.2422063
[2025-12-03 06:42:21] 2025-12-03 11:41:48,081 | INFO     | mean y: 3458741.995203837
[2025-12-03 06:42:21] 2025-12-03 11:41:48,081 | INFO     | intersect: -11687058417.535942
[2025-12-03 06:42:21] 2025-12-03 11:41:48,082 | INFO     | chi2: 4.003775879920165
[2025-12-03 06:42:21] 2025-12-03 11:41:48,082 | INFO     | current chi2=4.003775879920165 (change=1.6584078327394032 %)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,082 | INFO     | left removable region: 20
[2025-12-03 06:42:21] 2025-12-03 11:41:48,083 | INFO     | sum of square deviations: 19255789920.25
[2025-12-03 06:42:21] 2025-12-03 11:41:48,086 | INFO     | sum of deviations: 330126639496.5002
[2025-12-03 06:42:21] 2025-12-03 11:41:48,086 | INFO     | mean x: 1764749340.75
[2025-12-03 06:42:21] 2025-12-03 11:41:48,086 | INFO     | mean y: 3509853.409090909
[2025-12-03 06:42:21] 2025-12-03 11:41:48,086 | INFO     | intersect: -30251845643.73365
[2025-12-03 06:42:21] 2025-12-03 11:41:48,087 | INFO     | chi2: 0.029352649166651455
[2025-12-03 06:42:21] 2025-12-03 11:41:48,087 | INFO     | current memory leak: 17.14 B/s (using 396 data points, chi2=0.03)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,087 | INFO     | could have reported an average CPU frequency of 2394 MHz (18 samples)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,087 | INFO     | ..............................
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . Timing measurements:
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . get job = 0 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . initial setup = 2 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . payload setup = 7 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . stage-in = 0 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . payload execution = 26025 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . stage-out = 3 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,088 | INFO     | . log creation = 0 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,089 | INFO     | ..............................
[2025-12-03 06:42:21] 2025-12-03 11:41:48,171 | INFO     | 
[2025-12-03 06:42:21] 2025-12-03 11:41:48,171 | INFO     | job summary report
[2025-12-03 06:42:21] 2025-12-03 11:41:48,171 | INFO     | --------------------------------------------------
[2025-12-03 06:42:21] 2025-12-03 11:41:48,171 | INFO     | PanDA job id: 6895383102
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | task id: 47556137
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | errors: (none)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | pilot state: finished 
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | transexitcode: 0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | exeerrorcode: 0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,172 | INFO     | exeerrordiag: 
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | exitcode: 0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | exitmsg: OK
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | cpuconsumptiontime: 296612 s
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | nevents: 1000
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | neventsw: 0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,173 | INFO     | pid: 6085
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | pgrp: 6085
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | corecount: 12
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | event service: False
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | sizes: {0: 2284314, 5: 2284576, 11: 2284632, 26037: 2321951, 26041: 2330945, 26043: 2331001, 26048: 2331375}
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | --------------------------------------------------
[2025-12-03 06:42:21] 2025-12-03 11:41:48,174 | INFO     | 
[2025-12-03 06:42:21] 2025-12-03 11:41:48,175 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-03 06:42:21] 2025-12-03 11:41:48,198 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,199 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,199 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,199 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,202 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,202 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,202 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:42:21] 2025-12-03 11:41:48,202 | INFO     | job 6895383102 has completed (purged errors)
[2025-12-03 06:42:21] 2025-12-03 11:41:48,202 | INFO     | overall cleanup function is called
[2025-12-03 06:42:21] 2025-12-03 11:41:49,219 | INFO     | --- collectZombieJob: --- 10, [6085]
[2025-12-03 06:42:21] 2025-12-03 11:41:49,219 | INFO     | zombie collector waiting for pid 6085
[2025-12-03 06:42:21] 2025-12-03 11:41:49,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:42:21] 2025-12-03 11:41:49,219 | INFO     | collected zombie processes
[2025-12-03 06:42:21] 2025-12-03 11:41:49,219 | INFO     | will attempt to kill all subprocesses of pid=6085
[2025-12-03 06:42:21] 2025-12-03 11:41:49,313 | INFO     | process IDs to be killed: [6085] (in reverse order)
[2025-12-03 06:42:21] 2025-12-03 11:41:49,365 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:42:21] 2025-12-03 11:41:49,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:42:21] 2025-12-03 11:41:49,369 | INFO     | did not find any defunct processes belonging to 6085
[2025-12-03 06:42:21] 2025-12-03 11:41:49,372 | INFO     | did not find any defunct processes belonging to 6085
[2025-12-03 06:42:21] 2025-12-03 11:41:49,374 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:42:21] 2025-12-03 11:41:49,374 | INFO     | ready for new job
[2025-12-03 06:42:21] 2025-12-03 11:41:49,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:42:21] 2025-12-03 11:41:49,377 | INFO     | ***************************************
[2025-12-03 06:42:21] 2025-12-03 11:41:49,377 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:42:21] 2025-12-03 11:41:49,377 | INFO     | ***************************************
[2025-12-03 06:42:21] 2025-12-03 11:41:49,377 | INFO     | 
[2025-12-03 06:42:21] 2025-12-03 11:41:49,378 | INFO     | architecture information:
[2025-12-03 06:42:21] 2025-12-03 11:41:49,379 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:42:21] 2025-12-03 11:41:49,394 | INFO     | cat /etc/os-release:
[2025-12-03 06:42:21] NAME="CentOS Linux"
[2025-12-03 06:42:21] VERSION="7 (Core)"
[2025-12-03 06:42:21] ID="centos"
[2025-12-03 06:42:21] ID_LIKE="rhel fedora"
[2025-12-03 06:42:21] VERSION_ID="7"
[2025-12-03 06:42:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:42:21] ANSI_COLOR="0;31"
[2025-12-03 06:42:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:42:21] HOME_URL="https://www.centos.org/"
[2025-12-03 06:42:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:42:21] 
[2025-12-03 06:42:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:42:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:42:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:42:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:42:21] 
[2025-12-03 06:42:21] 2025-12-03 11:41:49,395 | INFO     | ***************************************
[2025-12-03 06:42:21] 2025-12-03 11:41:49,898 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-03 06:42:21] 2025-12-03 11:41:49,915 | INFO     | sufficient remaining disk space (28251783168 B)
[2025-12-03 06:42:21] 2025-12-03 11:41:49,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:42:21] 2025-12-03 11:41:49,916 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:42:21] 2025-12-03 11:41:49,916 | INFO     | update_server=False
[2025-12-03 06:42:21] 2025-12-03 11:41:49,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:42:21] 2025-12-03 11:41:49,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:42:21] 2025-12-03 11:41:49,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:42:21] 2025-12-03 11:41:49,917 | INFO     | aborting loop
[2025-12-03 06:42:21] 2025-12-03 11:41:49,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:42:21] 2025-12-03 11:41:49,942 | INFO     | all payload control threads have been joined
[2025-12-03 06:42:21] 2025-12-03 11:41:50,255 | INFO     | all data control threads have been joined
[2025-12-03 06:42:21] 2025-12-03 11:41:50,921 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:50,922 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:50,923 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:50,946 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:50,948 | INFO     | [payload] control thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:42:21] 2025-12-03 11:41:51,118 | INFO     | [job] validate thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,154 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,260 | INFO     | [data] control thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,302 | INFO     | all job control threads have been joined
[2025-12-03 06:42:21] 2025-12-03 11:41:51,478 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,627 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,799 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:51,943 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:52,308 | INFO     | [job] control thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:53,088 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:41:53,922 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:42:21] 2025-12-03 11:42:06,363 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:42:21] 2025-12-03 11:42:06,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139892277499712)>', '<ExcThread(monitor, started 139891706947328)>']
[2025-12-03 06:42:21] 2025-12-03 11:42:11,636 | INFO     | all workflow threads have been joined
[2025-12-03 06:42:21] 2025-12-03 11:42:11,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:42:21] 2025-12-03 11:42:11,636 | INFO     | traces error code: 0
[2025-12-03 06:42:21] 2025-12-03 11:42:11,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:42:21] 2025-12-03 11:42:20,949 | INFO     | PID=31083 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 06:42:21] 2025-12-03 11:42:20,950 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:42:21] 2025-12-03 11:42:20,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:42:21] 2025-12-03 11:42:20,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:42:21] 2025-12-03 11:42:20,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:42:21] 2025-12-03 11:42:20,950 | INFO     | [monitor] control thread has ended
[2025-12-03 06:42:21] 2025-12-03 11:42:21,045 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:42:21] 2025-12-03 11:42:21,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:42:21] 2025-12-03 11:42:21,052 [wrapper] pilotpid: 31083
[2025-12-03 06:42:21] 2025-12-03 11:42:21,056 [wrapper] Pilot exit status: 0
[2025-12-03 06:42:21] 2025-12-03 11:42:21,070 [wrapper] pandaids: 6895383102
[2025-12-03 06:42:21] 2025-12-03 11:42:21,110 [wrapper] cleanup supervisor_pilot 26287 31084
[2025-12-03 06:42:21] 2025-12-03 11:42:21,114 [wrapper] Test setup, not cleaning
[2025-12-03 06:42:21] 2025-12-03 11:42:21,118 [wrapper] apfmon messages muted
[2025-12-03 06:42:21] 2025-12-03 11:42:21,122 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:42:21] 2025-12-03 11:42:21,126 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:42:21]  *** Error codes and diagnostics ***
[2025-12-03 06:42:21]     "exeErrorCode": 0,
[2025-12-03 06:42:21]     "exeErrorDiag": "",
[2025-12-03 06:42:21]     "pilotErrorCode": 0,
[2025-12-03 06:42:21]     "pilotErrorDiag": "",
[2025-12-03 06:42:21]  *** Listing of results directory ***
[2025-12-03 06:42:21] total 1305508
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 22:19 pilot3.tar.gz
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 23:01 queuedata.json
[2025-12-03 06:42:21] -rwx------ 1 boincer umatlas     36292 Nov 23 23:02 runpilot2-wrapper.sh
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas       100 Dec  2 23:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:42:21] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 23:27 run_atlas
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas       105 Dec  2 23:27 job.xml
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas 409531122 Dec  2 23:27 EVNT.47483658._001003.pool.root.1
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 23:27 start_atlas.sh
[2025-12-03 06:42:21] drwxrwx--x 2 boincer umatlas      4096 Dec  2 23:27 shared
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas    590104 Dec  2 23:27 input.tar.gz
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas         0 Dec  2 23:27 boinc_lockfile
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas      2785 Dec  2 23:27 pandaJob.out
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas        57 Dec  2 23:27 setup.sh.local
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas    989297 Dec  2 23:27 agis_schedconf.cvmfs.json
[2025-12-03 06:42:21] drwx------ 5 boincer umatlas      4096 Dec  2 23:27 pilot3
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas       532 Dec  3 06:32 boinc_task_state.xml
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas      5955 Dec  3 06:39 init_data.xml
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas 911735968 Dec  3 06:41 HITS.47556137._009897.pool.root.1
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas        95 Dec  3 06:41 pilot_heartbeat.json
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas      1063 Dec  3 06:41 memory_monitor_summary.json
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas   1516240 Dec  3 06:41 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas   2179348 Dec  3 06:41 log.47556137._009897.job.log.tgz.1
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas      8657 Dec  3 06:41 heartbeat.json
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas      8192 Dec  3 06:41 boinc_mmap_file
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas        29 Dec  3 06:41 wrapper_checkpoint.txt
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas       745 Dec  3 06:42 pilotlog.txt
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas   3648184 Dec  3 06:42 log.47556137._009897.job.log.1
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas       353 Dec  3 06:42 output.list
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas       620 Dec  3 06:42 runtime_log
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas   5847040 Dec  3 06:42 result.tar.gz
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas       669 Dec  3 06:42 XGMODm2xch8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3OLKDmk1YuFm.diag
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas      9340 Dec  3 06:42 runtime_log.err
[2025-12-03 06:42:21] -rw-r--r-- 1 boincer umatlas     21293 Dec  3 06:42 stderr.txt
[2025-12-03 06:42:21] HITS file was successfully produced:
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas 911735968 Dec  3 06:41 shared/HITS.pool.root.1
[2025-12-03 06:42:21]  *** Contents of shared directory: ***
[2025-12-03 06:42:21] total 1296620
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas 409531122 Dec  2 23:27 ATLAS.root_0
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 23:27 start_atlas.sh
[2025-12-03 06:42:21] -rw-r--r-- 2 boincer umatlas    590104 Dec  2 23:27 input.tar.gz
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas 911735968 Dec  3 06:41 HITS.pool.root.1
[2025-12-03 06:42:21] -rw------- 1 boincer umatlas   5847040 Dec  3 06:42 result.tar.gz
06:42:22 (27408): run_atlas exited; CPU time 289733.921539
06:42:22 (27408): called boinc_finish(0)

</stderr_txt>
]]>

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