Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-02 23:22:25 (1489120): vboxwrapper version 26210
2025-12-02 23:22:25 (1489120): BOINC client version: 8.2.8
2025-12-02 23:22:26 (1489120): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-12-02 23:22:26 (1489120): Successfully copied 'init_data.xml' to the shared directory.
2025-12-02 23:22:26 (1489120): Create VM. (boinc_ab7912b6ce463d1a, slot#0)
2025-12-02 23:22:26 (1489120): Setting Memory Size for VM. (4200MB)
2025-12-02 23:22:26 (1489120): Setting CPU Count for VM. (2)
2025-12-02 23:22:26 (1489120): Setting Chipset Options for VM.
2025-12-02 23:22:26 (1489120): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-02 23:22:26 (1489120): Setting Boot Options for VM.
2025-12-02 23:22:27 (1489120): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-02 23:22:27 (1489120): Enabling VM Network Access.
2025-12-02 23:22:27 (1489120): Disabling USB Support for VM.
2025-12-02 23:22:27 (1489120): Disabling COM Port Support for VM.
2025-12-02 23:22:27 (1489120): Disabling LPT Port Support for VM.
2025-12-02 23:22:27 (1489120): Disabling Audio Support for VM.
2025-12-02 23:22:27 (1489120): Disabling Clipboard Support for VM.
2025-12-02 23:22:27 (1489120): Disabling Drag and Drop Support for VM.
2025-12-02 23:22:27 (1489120): Adding storage controller(s) to VM.
2025-12-02 23:22:27 (1489120): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-02 23:22:28 (1489120): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-02 23:22:28 (1489120): forwarding host port 47073 to guest port 80
2025-12-02 23:22:28 (1489120): Enabling remote desktop for VM.
2025-12-02 23:22:28 (1489120): Required extension pack not installed, remote desktop not enabled.
2025-12-02 23:22:28 (1489120): Enabling shared directory for VM.
2025-12-02 23:22:28 (1489120): Starting VM using VBoxManage interface. (boinc_ab7912b6ce463d1a, slot#0)
2025-12-02 23:22:30 (1489120): Successfully started VM. (PID = '1489637')
2025-12-02 23:22:30 (1489120): Reporting VM Process ID to BOINC.
2025-12-02 23:22:30 (1489120): Guest Log: BIOS: VirtualBox 7.0.16
2025-12-02 23:22:30 (1489120): Guest Log: CPUID EDX: 0x178bfbff
2025-12-02 23:22:30 (1489120): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-02 23:22:30 (1489120): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-02 23:22:30 (1489120): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-02 23:22:30 (1489120): Detected: Web Application Enabled (http://localhost:47073)
2025-12-02 23:22:30 (1489120): Preference change detected
2025-12-02 23:22:30 (1489120): Setting CPU throttle for VM. (100%)
2025-12-02 23:22:30 (1489120): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-02 23:22:32 (1489120): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-02 23:22:32 (1489120): Guest Log: BIOS: Booting from Hard Disk...
2025-12-02 23:22:35 (1489120): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-02 23:22:35 (1489120): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-02 23:22:35 (1489120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-02 23:22:40 (1489120): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-02 23:22:40 (1489120): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-02 23:22:47 (1489120): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000187 main     Log opened 2025-12-03T04:22:45.821542000Z
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000299 main     OS Product: Linux
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000325 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000343 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000361 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000361 main     Process ID: 1257
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.000362 main     Package type: LINUX_64BITS_GENERIC
2025-12-02 23:22:47 (1489120): Guest Log: 00:00:00.001996 main     5.2.32 r132073 started. Verbose level = 0
2025-12-02 23:22:47 (1489120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-02 23:22:47 (1489120): Guest Log: [INFO] Mounting shared directory
2025-12-02 23:22:47 (1489120): Guest Log: [INFO] Checking for init_data.xml
2025-12-02 23:22:49 (1489120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-02 23:22:49 (1489120): Guest Log: [INFO] Detected branch: prod
2025-12-02 23:22:49 (1489120): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-02 23:22:49 (1489120): Guest Log: Copying input files
2025-12-02 23:22:51 (1489120): Guest Log: Copied input files into RunAtlas.
2025-12-02 23:22:51 (1489120): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-02 23:22:51 (1489120): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-02 23:22:51 (1489120): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-02 23:22:51 (1489120): Guest Log: Further information can be found at the LHC@home message board.
2025-12-02 23:23:39 (1489120): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-02 23:23:39 (1489120): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-02 23:23:39 (1489120): Guest Log: 2.6.3.0 1531 0 30064 153581 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-02 23:23:40 (1489120): Guest Log: copied the webapp to /var/www
2025-12-02 23:23:40 (1489120): Guest Log: ATHENA_PROC_NUMBER=2
2025-12-02 23:23:40 (1489120): Guest Log: ATHENA_CORE_NUMBER=2
2025-12-02 23:23:40 (1489120): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-02 23:23:40 (1489120): Guest Log:  *** Starting ATLAS job. (PandaID=6912027452 taskID=46964970) ***
2025-12-03 01:01:30 (1489120): Status Report: Elapsed Time: '6000.000000'
2025-12-03 01:01:30 (1489120): Status Report: CPU Time: '11304.100000'
2025-12-03 02:40:31 (1489120): Status Report: Elapsed Time: '12000.000000'
2025-12-03 02:40:31 (1489120): Status Report: CPU Time: '23160.680000'
2025-12-03 03:08:24 (1489120): Preference change detected
2025-12-03 03:08:24 (1489120): Setting CPU throttle for VM. (100%)
2025-12-03 03:08:24 (1489120): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-03 03:56:53 (1489120): Guest Log:  *** Job finished ***
2025-12-03 03:56:53 (1489120): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:28,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:28,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:42,945 | INFO     | [monitor] cgroup control has ended
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:44,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645807810368)>', '<ExcThread(monitor, started 139645140588288)>']
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:45,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:45,414 | INFO     | [monitor] control thread has ended
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,520 | INFO     | all workflow threads have been joined
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,521 | INFO     | end of generic workflow (traces error code: 0)
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,521 | INFO     | traces error code: 0
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,664 [wrapper] ==== pilot stdout END ====
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,670 [wrapper] ==== wrapper stdout RESUME ====
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,676 [wrapper] pilotpid: 5921
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,682 [wrapper] Pilot exit status: 0
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,758 [wrapper] pandaids: 6912027452
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,782 [wrapper] cleanup supervisor_pilot 19435 5922
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,787 [wrapper] Test setup, not cleaning
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,791 [wrapper] apfmon messages muted
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,795 [wrapper] ==== wrapper stdout END ====
2025-12-03 03:56:53 (1489120): Guest Log: 2025-12-03 08:56:49,800 [wrapper] ==== wrapper stderr END ====
2025-12-03 03:56:53 (1489120): Guest Log:  *** Error codes and diagnostics ***
2025-12-03 03:56:53 (1489120): Guest Log:     "exeErrorCode": 0,
2025-12-03 03:56:53 (1489120): Guest Log:     "exeErrorDiag": "",
2025-12-03 03:56:53 (1489120): Guest Log:     "pilotErrorCode": 0,
2025-12-03 03:56:53 (1489120): Guest Log:     "pilotErrorDiag": "",
2025-12-03 03:56:53 (1489120): Guest Log:  *** Listing of results directory ***
2025-12-03 03:56:53 (1489120): Guest Log: total 187008
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Dec  2 11:03 pilot3.tar.gz
2025-12-03 03:56:53 (1489120): Guest Log: -rwx------. 1 atlas atlas     36292 Dec  2 11:05 runpilot2-wrapper.sh
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec  2 11:05 queuedata.json
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas      6113 Dec  3 04:22 init_data.xml
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Dec  3 04:22 start_atlas.sh
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas    589955 Dec  3 04:22 input.tar.gz
2025-12-03 03:56:53 (1489120): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  3 04:22 EVNT.46964963._000067.pool.root.1 -> /data/./ATLAS.root_0
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas      2595 Dec  3 04:23 pandaJob.out
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas    989297 Dec  3 04:24 agis_schedconf.cvmfs.json
2025-12-03 03:56:53 (1489120): Guest Log: drwx------. 5 atlas atlas      4096 Dec  3 04:24 pilot3
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas 182530108 Dec  3 08:55 HITS.46964970._001722.pool.root.1
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas      1030 Dec  3 08:55 memory_monitor_summary.json
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  3 08:55 agis_ddmendpoints.agis.ALL.json
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas    397327 Dec  3 08:55 log.46964970._001722.job.log.tgz.1
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas      7818 Dec  3 08:55 heartbeat.json
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas        95 Dec  3 08:56 pilot_heartbeat.json
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas      4991 Dec  3 08:56 pilotlog.txt
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas   2168075 Dec  3 08:56 log.46964970._001722.job.log.1
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas       357 Dec  3 08:56 output.list
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  3 08:56 runtime_log
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas   2580480 Dec  3 08:56 result.tar.gz
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas       666 Dec  3 08:56 VG0NDmFNdk8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMiPKDmozJJrm.diag
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 atlas atlas      8774 Dec  3 08:56 runtime_log.err
2025-12-03 03:56:53 (1489120): Guest Log: Looking for outputfile HITS.46964970._001722.pool.root.1
2025-12-03 03:56:53 (1489120): Guest Log: HITS file was successfully produced
2025-12-03 03:56:53 (1489120): Guest Log: -rw-------. 1 atlas atlas 182530108 Dec  3 08:55 /home/atlas/RunAtlas/HITS.46964970._001722.pool.root.1
2025-12-03 03:56:53 (1489120): Guest Log: Successfully finished the ATLAS job!
2025-12-03 03:56:53 (1489120): Guest Log: Copying the results back to the shared directory!
2025-12-03 03:56:53 (1489120): Guest Log:  *** Contents of shared directory: ***
2025-12-03 03:56:53 (1489120): Guest Log: total 263804
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 root root 266928391 Dec  3 04:22 ATLAS.root_0
2025-12-03 03:56:53 (1489120): Guest Log: -rw-rw-r--. 1 root root      6113 Dec  3 04:22 init_data.xml
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 root root    589955 Dec  3 04:22 input.tar.gz
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 root root   2580480 Dec  3 08:56 result.tar.gz
2025-12-03 03:56:53 (1489120): Guest Log: -rw-r--r--. 1 root root     15847 Dec  3 04:22 start_atlas.sh
2025-12-03 03:56:53 (1489120): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-03 03:56:53 (1489120): VM Completion File Detected.
2025-12-03 03:56:53 (1489120): Powering off VM.
2025-12-03 03:56:54 (1489120): Successfully stopped VM.
2025-12-03 03:56:54 (1489120): Deregistering VM. (boinc_ab7912b6ce463d1a, slot#0)
2025-12-03 03:56:54 (1489120): Removing network bandwidth throttle group from VM.
2025-12-03 03:56:54 (1489120): Removing VM from VirtualBox.
2025-12-03 03:56:59 (1489120): called boinc_finish(0)

</stderr_txt>
]]>

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