Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
21:28:41 (2885722): wrapper (7.7.26015): starting
21:28:41 (2885722): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 21:28:41] Arguments: --nthreads 4
[2025-12-02 21:28:41] Threads: 4
[2025-12-02 21:28:41] Checking for CVMFS
[2025-12-02 21:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:28:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:28:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:28:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:28:41] 2.13.3.0 3932 3468 65692 153581 0 117 3679316 20480001 4959 130560 0 8999338 99.849 1285989 893 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 21:28:41] CVMFS is ok
[2025-12-02 21:28:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:28:41] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 21:28:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 21:28:41] Further information can be found at the LHC@home message board.
[2025-12-02 21:28:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:28:41] Checking for apptainer binary...
[2025-12-02 21:28:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 21:28:41] Running /usr/bin/apptainer --version
[2025-12-02 21:28:41] apptainer version 1.4.3
[2025-12-02 21:28:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:28:41] phantom
[2025-12-02 21:28:41] apptainer works
[2025-12-02 21:28:41] Set ATHENA_PROC_NUMBER=4
[2025-12-02 21:28:41] Set ATHENA_CORE_NUMBER=4
[2025-12-02 21:28:41] Starting ATLAS job with PandaID=6894236530
[2025-12-02 21:28:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:44:50]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:44:50] 2025-12-03 13:44:07,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,674 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 06:44:50] 2025-12-03 13:44:07,678 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4065.6748749999997
[2025-12-03 06:44:50] 2025-12-03 13:44:07,682 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6894236530/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,683 | INFO     | extracted standard info from prmon json
[2025-12-03 06:44:50] 2025-12-03 13:44:07,683 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:44:50] 2025-12-03 13:44:07,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:44:50] 2025-12-03 13:44:07,689 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:44:50] 2025-12-03 13:44:07,689 | INFO     | sum of square deviations: 50472509132.5
[2025-12-03 06:44:50] 2025-12-03 13:44:07,694 | INFO     | sum of deviations: 99216111338.50003
[2025-12-03 06:44:50] 2025-12-03 13:44:07,694 | INFO     | mean x: 1764752775.5
[2025-12-03 06:44:50] 2025-12-03 13:44:07,694 | INFO     | mean y: 2265544.23992674
[2025-12-03 06:44:50] 2025-12-03 13:44:07,694 | INFO     | intersect: -3466789409.998333
[2025-12-03 06:44:50] 2025-12-03 13:44:07,694 | INFO     | chi2: 3.384956218597332
[2025-12-03 06:44:50] 2025-12-03 13:44:07,695 | INFO     | sum of square deviations: 49098557790.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | sum of deviations: 196933898892.00003
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | mean x: 1764752623.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | mean y: 2276367.8354898337
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | intersect: -7076131436.192879
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | chi2: 1.6033248332716206
[2025-12-03 06:44:50] 2025-12-03 13:44:07,700 | INFO     | current chi2=1.6033248332716206 (change=52.633808837385466 %)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,701 | INFO     | sum of square deviations: 47749769710.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,705 | INFO     | sum of deviations: 193064530574.49994
[2025-12-03 06:44:50] 2025-12-03 13:44:07,705 | INFO     | mean x: 1764752470.5
[2025-12-03 06:44:50] 2025-12-03 13:44:07,706 | INFO     | mean y: 2275930.2406716417
[2025-12-03 06:44:50] 2025-12-03 13:44:07,706 | INFO     | intersect: -7133069629.8849945
[2025-12-03 06:44:50] 2025-12-03 13:44:07,706 | INFO     | chi2: 1.603467960523808
[2025-12-03 06:44:50] 2025-12-03 13:44:07,706 | INFO     | current chi2=1.603467960523808 (change=-0.008926902971708102 %)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,706 | INFO     | right removable region: 535
[2025-12-03 06:44:50] 2025-12-03 13:44:07,707 | INFO     | sum of square deviations: 49098557790.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,711 | INFO     | sum of deviations: 19595469870.99998
[2025-12-03 06:44:50] 2025-12-03 13:44:07,711 | INFO     | mean x: 1764752928.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,711 | INFO     | mean y: 2274344.3974121995
[2025-12-03 06:44:50] 2025-12-03 13:44:07,712 | INFO     | intersect: -702047012.2153519
[2025-12-03 06:44:50] 2025-12-03 13:44:07,712 | INFO     | chi2: 1.8766249421811003
[2025-12-03 06:44:50] 2025-12-03 13:44:07,712 | INFO     | current chi2=1.8766249421811003 (change=44.55984594805951 %)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,712 | INFO     | sum of square deviations: 47749769710.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,717 | INFO     | sum of deviations: 17277604070.999977
[2025-12-03 06:44:50] 2025-12-03 13:44:07,717 | INFO     | mean x: 1764753080.5
[2025-12-03 06:44:50] 2025-12-03 13:44:07,717 | INFO     | mean y: 2274605.4104477614
[2025-12-03 06:44:50] 2025-12-03 13:44:07,717 | INFO     | intersect: -636277270.1930703
[2025-12-03 06:44:50] 2025-12-03 13:44:07,718 | INFO     | chi2: 1.8762387526130626
[2025-12-03 06:44:50] 2025-12-03 13:44:07,718 | INFO     | current chi2=1.8762387526130626 (change=0.02057894251308745 %)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,718 | INFO     | left removable region: 20
[2025-12-03 06:44:50] 2025-12-03 13:44:07,718 | INFO     | sum of square deviations: 42354394130.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,722 | INFO     | sum of deviations: 112177172440.00003
[2025-12-03 06:44:50] 2025-12-03 13:44:07,722 | INFO     | mean x: 1764753050.0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,722 | INFO     | mean y: 2285056.250485437
[2025-12-03 06:44:50] 2025-12-03 13:44:07,722 | INFO     | intersect: -4671728378.961083
[2025-12-03 06:44:50] 2025-12-03 13:44:07,723 | INFO     | chi2: 0.07312278145151208
[2025-12-03 06:44:50] 2025-12-03 13:44:07,723 | INFO     | current memory leak: 2.65 B/s (using 515 data points, chi2=0.07)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,723 | INFO     | could have reported an average CPU frequency of 3991 MHz (22 samples)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | ..............................
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . Timing measurements:
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . get job = 0 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . initial setup = 3 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . payload setup = 4 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . stage-in = 0 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . payload execution = 33282 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . stage-out = 4 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | . log creation = 0 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,724 | INFO     | ..............................
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | 
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | job summary report
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | --------------------------------------------------
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | PanDA job id: 6894236530
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | task id: 47533962
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | errors: (none)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,786 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | pilot state: finished 
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | transexitcode: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | exeerrorcode: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | exeerrordiag: 
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | exitcode: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | exitmsg: OK
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | cpuconsumptiontime: 132105 s
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | nevents: 1000
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | neventsw: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | pid: 2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | pgrp: 2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | corecount: 4
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | event service: False
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | sizes: {0: 2284315, 3: 2284577, 11: 2284605, 33289: 2325358, 33290: 2325357, 33296: 2334605, 33302: 2334795}
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | --------------------------------------------------
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | 
[2025-12-03 06:44:50] 2025-12-03 13:44:07,787 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-12-03 06:44:50] 2025-12-03 13:44:07,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:44:50] 2025-12-03 13:44:07,804 | INFO     | job 6894236530 has completed (purged errors)
[2025-12-03 06:44:50] 2025-12-03 13:44:07,804 | INFO     | overall cleanup function is called
[2025-12-03 06:44:50] 2025-12-03 13:44:08,815 | INFO     | --- collectZombieJob: --- 10, [2896253]
[2025-12-03 06:44:50] 2025-12-03 13:44:08,816 | INFO     | zombie collector waiting for pid 2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:08,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:44:50] 2025-12-03 13:44:08,816 | INFO     | collected zombie processes
[2025-12-03 06:44:50] 2025-12-03 13:44:08,816 | INFO     | will attempt to kill all subprocesses of pid=2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:08,961 | INFO     | process IDs to be killed: [2896253] (in reverse order)
[2025-12-03 06:44:50] 2025-12-03 13:44:09,012 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:44:50] 2025-12-03 13:44:09,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:44:50] 2025-12-03 13:44:09,016 | INFO     | did not find any defunct processes belonging to 2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:09,020 | INFO     | did not find any defunct processes belonging to 2896253
[2025-12-03 06:44:50] 2025-12-03 13:44:09,021 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:44:50] 2025-12-03 13:44:09,021 | INFO     | ready for new job
[2025-12-03 06:44:50] 2025-12-03 13:44:09,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:44:50] 2025-12-03 13:44:09,023 | INFO     | ***************************************
[2025-12-03 06:44:50] 2025-12-03 13:44:09,023 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:44:50] 2025-12-03 13:44:09,024 | INFO     | ***************************************
[2025-12-03 06:44:50] 2025-12-03 13:44:09,024 | INFO     | 
[2025-12-03 06:44:50] 2025-12-03 13:44:09,025 | INFO     | architecture information:
[2025-12-03 06:44:50] 2025-12-03 13:44:09,025 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:44:50] 2025-12-03 13:44:09,036 | INFO     | cat /etc/os-release:
[2025-12-03 06:44:50] NAME="CentOS Linux"
[2025-12-03 06:44:50] VERSION="7 (Core)"
[2025-12-03 06:44:50] ID="centos"
[2025-12-03 06:44:50] ID_LIKE="rhel fedora"
[2025-12-03 06:44:50] VERSION_ID="7"
[2025-12-03 06:44:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:44:50] ANSI_COLOR="0;31"
[2025-12-03 06:44:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:44:50] HOME_URL="https://www.centos.org/"
[2025-12-03 06:44:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:44:50] 
[2025-12-03 06:44:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:44:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:44:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:44:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:44:50] 
[2025-12-03 06:44:50] 2025-12-03 13:44:09,037 | INFO     | ***************************************
[2025-12-03 06:44:50] 2025-12-03 13:44:09,539 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-12-03 06:44:50] 2025-12-03 13:44:09,551 | INFO     | sufficient remaining disk space (417311227904 B)
[2025-12-03 06:44:50] 2025-12-03 13:44:09,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:44:50] 2025-12-03 13:44:09,551 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:44:50] 2025-12-03 13:44:09,552 | INFO     | update_server=False
[2025-12-03 06:44:50] 2025-12-03 13:44:09,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:44:50] 2025-12-03 13:44:09,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:44:50] 2025-12-03 13:44:09,720 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 06:44:50] 2025-12-03 13:44:09,720 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 06:44:50] 2025-12-03 13:44:09,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:44:50] 2025-12-03 13:44:09,720 | INFO     | will abort loop
[2025-12-03 06:44:50] 2025-12-03 13:44:09,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:44:50] 2025-12-03 13:44:10,149 | INFO     | all payload control threads have been joined
[2025-12-03 06:44:50] 2025-12-03 13:44:10,296 | INFO     | all data control threads have been joined
[2025-12-03 06:44:50] 2025-12-03 13:44:10,312 | INFO     | all job control threads have been joined
[2025-12-03 06:44:50] 2025-12-03 13:44:10,557 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:10,557 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:10,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:10,716 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:10,725 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:10,949 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,154 | INFO     | [payload] control thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,196 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,197 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,301 | INFO     | [data] control thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,317 | INFO     | [job] control thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,660 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,731 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,789 | INFO     | [job] validate thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:11,999 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:12,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:44:50] 2025-12-03 13:44:16,474 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:44:50] 2025-12-03 13:44:39,462 | INFO     | PID=2889582 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:44:50] 2025-12-03 13:44:39,462 | INFO     | .. there are 7 such processes running
[2025-12-03 06:44:50] 2025-12-03 13:44:39,462 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:44:50] 2025-12-03 13:44:39,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:44:50] 2025-12-03 13:44:39,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:44:50] 2025-12-03 13:44:44,338 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:44:50] 2025-12-03 13:44:45,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130246635276096)>', '<ExcThread(monitor, started 130246007314176)>']
[2025-12-03 06:44:50] 2025-12-03 13:44:45,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:44:50] 2025-12-03 13:44:45,491 | INFO     | [monitor] control thread has ended
[2025-12-03 06:44:50] 2025-12-03 13:44:50,390 | INFO     | all workflow threads have been joined
[2025-12-03 06:44:50] 2025-12-03 13:44:50,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:44:50] 2025-12-03 13:44:50,390 | INFO     | traces error code: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:50,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:44:50] 2025-12-03 13:44:50,463 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:44:50] 2025-12-03 13:44:50,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:44:50] 2025-12-03 13:44:50,467 [wrapper] pilotpid: 2889582
[2025-12-03 06:44:50] 2025-12-03 13:44:50,468 [wrapper] Pilot exit status: 0
[2025-12-03 06:44:50] 2025-12-03 13:44:50,475 [wrapper] pandaids: 6894236530
[2025-12-03 06:44:50] 2025-12-03 13:44:50,508 [wrapper] cleanup supervisor_pilot 3314871 2889583
[2025-12-03 06:44:50] 2025-12-03 13:44:50,510 [wrapper] Test setup, not cleaning
[2025-12-03 06:44:50] 2025-12-03 13:44:50,512 [wrapper] apfmon messages muted
[2025-12-03 06:44:50] 2025-12-03 13:44:50,514 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:44:50] 2025-12-03 13:44:50,515 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:44:50]  *** Error codes and diagnostics ***
[2025-12-03 06:44:50]     "exeErrorCode": 0,
[2025-12-03 06:44:50]     "exeErrorDiag": "",
[2025-12-03 06:44:50]     "pilotErrorCode": 0,
[2025-12-03 06:44:50]     "pilotErrorDiag": "",
[2025-12-03 06:44:50]  *** Listing of results directory ***
[2025-12-03 06:44:50] total 1310440
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc      5112 Nov 23 19:53 queuedata.json
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc    576529 Nov 23 19:53 pilot3.tar.gz
[2025-12-03 06:44:50] -rwx------ 1 boinc boinc     36292 Nov 23 19:57 runpilot2-wrapper.sh
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc       100 Dec  2 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:44:50] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 21:28 run_atlas
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc       105 Dec  2 21:28 job.xml
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc 408029852 Dec  2 21:28 EVNT.47493127._001001.pool.root.1
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc     15847 Dec  2 21:28 start_atlas.sh
[2025-12-03 06:44:50] drwxrwx--x 2 boinc boinc      4096 Dec  2 21:28 shared
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc    590098 Dec  2 21:28 input.tar.gz
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc      9721 Dec  2 21:28 init_data.xml
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc         0 Dec  2 21:28 boinc_lockfile
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc      2782 Dec  2 21:28 pandaJob.out
[2025-12-03 06:44:50] -rw------- 1 boinc boinc    989297 Dec  2 21:28 agis_schedconf.cvmfs.json
[2025-12-03 06:44:50] drwx------ 5 boinc boinc      4096 Dec  2 21:28 pilot3
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc       532 Dec  3 06:38 boinc_task_state.xml
[2025-12-03 06:44:50] -rw------- 1 boinc boinc 917659537 Dec  3 06:43 HITS.47533962._000008.pool.root.1
[2025-12-03 06:44:50] -rw------- 1 boinc boinc      1032 Dec  3 06:43 memory_monitor_summary.json
[2025-12-03 06:44:50] -rw------- 1 boinc boinc   1516240 Dec  3 06:44 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:44:50] -rw------- 1 boinc boinc   1358871 Dec  3 06:44 log.47533962._000008.job.log.tgz.1
[2025-12-03 06:44:50] -rw------- 1 boinc boinc      8543 Dec  3 06:44 heartbeat.json
[2025-12-03 06:44:50] -rw------- 1 boinc boinc        95 Dec  3 06:44 pilot_heartbeat.json
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc        29 Dec  3 06:44 wrapper_checkpoint.txt
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc      8192 Dec  3 06:44 boinc_mmap_file
[2025-12-03 06:44:50] -rw------- 1 boinc boinc      5017 Dec  3 06:44 pilotlog.txt
[2025-12-03 06:44:50] -rw------- 1 boinc boinc   4782273 Dec  3 06:44 log.47533962._000008.job.log.1
[2025-12-03 06:44:50] -rw------- 1 boinc boinc       353 Dec  3 06:44 output.list
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc       620 Dec  3 06:44 runtime_log
[2025-12-03 06:44:50] -rw------- 1 boinc boinc   6164480 Dec  3 06:44 result.tar.gz
[2025-12-03 06:44:50] -rw------- 1 boinc boinc       662 Dec  3 06:44 TubLDmWwbh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuMLKDmlGuFsn.diag
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc      8920 Dec  3 06:44 runtime_log.err
[2025-12-03 06:44:50] -rw-r--r-- 1 boinc boinc     21339 Dec  3 06:44 stderr.txt
[2025-12-03 06:44:50] HITS file was successfully produced:
[2025-12-03 06:44:50] -rw------- 1 boinc boinc 917659537 Dec  3 06:43 shared/HITS.pool.root.1
[2025-12-03 06:44:50]  *** Contents of shared directory: ***
[2025-12-03 06:44:50] total 1301244
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc 408029852 Dec  2 21:28 ATLAS.root_0
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc     15847 Dec  2 21:28 start_atlas.sh
[2025-12-03 06:44:50] -rw-r--r-- 2 boinc boinc    590098 Dec  2 21:28 input.tar.gz
[2025-12-03 06:44:50] -rw------- 1 boinc boinc 917659537 Dec  3 06:43 HITS.pool.root.1
[2025-12-03 06:44:50] -rw------- 1 boinc boinc   6164480 Dec  3 06:44 result.tar.gz
06:44:52 (2885722): run_atlas exited; CPU time 132309.066726
06:44:52 (2885722): called boinc_finish(0)

</stderr_txt>
]]>

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