Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
09:12:50 (119196): wrapper (7.7.26015): starting
09:12:50 (119196): wrapper: running run_atlas (--nthreads 10)
[2025-12-09 09:12:50] Arguments: --nthreads 10
[2025-12-09 09:12:50] Threads: 10
[2025-12-09 09:12:50] Checking for CVMFS
[2025-12-09 09:12:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 09:12:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 09:12:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 09:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 09:12:51] 2.13.3.0 8606 11492 67892 153812 2 109 4079673 4096001 5209 130560 0 36911904 99.976 1118853 689 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-09 09:12:51] CVMFS is ok
[2025-12-09 09:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 09:12:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-09 09:12:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-09 09:12:51] Further information can be found at the LHC@home message board.
[2025-12-09 09:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 09:12:51] Checking for apptainer binary...
[2025-12-09 09:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 09:12:51] Running /usr/bin/apptainer --version
[2025-12-09 09:12:51] apptainer version 1.4.2
[2025-12-09 09:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 09:12:51] 3950x-linux
[2025-12-09 09:12:51] apptainer works
[2025-12-09 09:12:51] Set ATHENA_PROC_NUMBER=10
[2025-12-09 09:12:51] Set ATHENA_CORE_NUMBER=10
[2025-12-09 09:12:51] Starting ATLAS job with PandaID=6895368126
[2025-12-09 09:12:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc242/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 22:59:42]  *** The last 200 lines of the pilot log: ***
[2025-12-09 22:59:42] 2025-12-10 06:59:01,161 | INFO     | monitor loop #3433: job 0:6895368126 is in state 'finished'
[2025-12-09 22:59:42] 2025-12-10 06:59:01,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 22:59:42] 2025-12-10 06:59:01,591 | INFO     | time since job start (49547s) is within the limit (172800.0s)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-09 22:59:42] 2025-12-10 06:59:02,530 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3400.1236875000004
[2025-12-09 22:59:42] 2025-12-10 06:59:02,541 | INFO     | using path: /var/lib/multiboinc/boinc242/slots/1/PanDA_Pilot-6895368126/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,542 | INFO     | extracted standard info from prmon json
[2025-12-09 22:59:42] 2025-12-10 06:59:02,542 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 22:59:42] 2025-12-10 06:59:02,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 22:59:42] 2025-12-10 06:59:02,568 | INFO     | fitting pss+swap vs Time
[2025-12-09 22:59:42] 2025-12-10 06:59:02,569 | INFO     | sum of square deviations: 166015115288.80173
[2025-12-09 22:59:42] 2025-12-10 06:59:02,594 | INFO     | sum of deviations: 1375379455343.6565
[2025-12-09 22:59:42] 2025-12-10 06:59:02,594 | INFO     | mean x: 1765325185.887931
[2025-12-09 22:59:42] 2025-12-10 06:59:02,597 | INFO     | mean y: 3150181.128078818
[2025-12-09 22:59:42] 2025-12-10 06:59:02,598 | INFO     | intersect: -14621975901.200148
[2025-12-09 22:59:42] 2025-12-10 06:59:02,598 | INFO     | chi2: 7.24472687072755
[2025-12-09 22:59:42] 2025-12-10 06:59:02,599 | INFO     | sum of square deviations: 162967779740.11414
[2025-12-09 22:59:42] 2025-12-10 06:59:02,624 | INFO     | sum of deviations: 1689413655188.1892
[2025-12-09 22:59:42] 2025-12-10 06:59:02,624 | INFO     | mean x: 1765325033.4027262
[2025-12-09 22:59:42] 2025-12-10 06:59:02,624 | INFO     | mean y: 3165894.1871127635
[2025-12-09 22:59:42] 2025-12-10 06:59:02,627 | INFO     | intersect: -18297164527.152058
[2025-12-09 22:59:42] 2025-12-10 06:59:02,628 | INFO     | chi2: 3.8149097993377072
[2025-12-09 22:59:42] 2025-12-10 06:59:02,628 | INFO     | current chi2=3.8149097993377072 (change=47.342255030318405 %)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,629 | INFO     | sum of square deviations: 159957783129.89062
[2025-12-09 22:59:42] 2025-12-10 06:59:02,654 | INFO     | sum of deviations: 1759324982053.4854
[2025-12-09 22:59:42] 2025-12-10 06:59:02,654 | INFO     | mean x: 1765324880.9127183
[2025-12-09 22:59:42] 2025-12-10 06:59:02,654 | INFO     | mean y: 3169424.3640897754
[2025-12-09 22:59:42] 2025-12-10 06:59:02,654 | INFO     | intersect: -19413079686.242493
[2025-12-09 22:59:42] 2025-12-10 06:59:02,655 | INFO     | chi2: 3.4010762050602215
[2025-12-09 22:59:42] 2025-12-10 06:59:02,655 | INFO     | current chi2=3.4010762050602215 (change=10.847794995030549 %)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,655 | INFO     | right removable region: 801
[2025-12-09 22:59:42] 2025-12-10 06:59:02,659 | INFO     | sum of square deviations: 162966596950.11414
[2025-12-09 22:59:42] 2025-12-10 06:59:02,686 | INFO     | sum of deviations: 1075935170205.0604
[2025-12-09 22:59:42] 2025-12-10 06:59:02,686 | INFO     | mean x: 1765325338.4027262
[2025-12-09 22:59:42] 2025-12-10 06:59:02,687 | INFO     | mean y: 3165151.427509294
[2025-12-09 22:59:42] 2025-12-10 06:59:02,687 | INFO     | intersect: -11651834425.099592
[2025-12-09 22:59:42] 2025-12-10 06:59:02,687 | INFO     | chi2: 4.280333060152973
[2025-12-09 22:59:42] 2025-12-10 06:59:02,691 | INFO     | current chi2=4.280333060152973 (change=40.917951269526306 %)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,691 | INFO     | sum of square deviations: 159955958566.35336
[2025-12-09 22:59:42] 2025-12-10 06:59:02,715 | INFO     | sum of deviations: 990561292778.7449
[2025-12-09 22:59:42] 2025-12-10 06:59:02,715 | INFO     | mean x: 1765325490.9089775
[2025-12-09 22:59:42] 2025-12-10 06:59:02,715 | INFO     | mean y: 3169475.174563591
[2025-12-09 22:59:42] 2025-12-10 06:59:02,715 | INFO     | intersect: -10928984075.858572
[2025-12-09 22:59:42] 2025-12-10 06:59:02,716 | INFO     | chi2: 4.135408873166256
[2025-12-09 22:59:42] 2025-12-10 06:59:02,716 | INFO     | current chi2=4.135408873166256 (change=3.385815658502469 %)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,716 | INFO     | left removable region: 20
[2025-12-09 22:59:42] 2025-12-10 06:59:02,717 | INFO     | sum of square deviations: 147717895218.36096
[2025-12-09 22:59:42] 2025-12-10 06:59:02,742 | INFO     | sum of deviations: 1248323535345.1726
[2025-12-09 22:59:42] 2025-12-10 06:59:02,742 | INFO     | mean x: 1765325460.4391806
[2025-12-09 22:59:42] 2025-12-10 06:59:02,742 | INFO     | mean y: 3195495.3930857875
[2025-12-09 22:59:42] 2025-12-10 06:59:02,742 | INFO     | intersect: -14915087198.472218
[2025-12-09 22:59:42] 2025-12-10 06:59:02,743 | INFO     | chi2: 0.15125948310950155
[2025-12-09 22:59:42] 2025-12-10 06:59:02,743 | INFO     | current memory leak: 8.45 B/s (using 781 data points, chi2=0.15)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | could have reported an average CPU frequency of 3400 MHz (31 samples)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | ..............................
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . Timing measurements:
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . get job = 0 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . initial setup = 4 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . payload setup = 12 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . stage-in = 0 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . payload execution = 49482 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . stage-out = 4 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | . log creation = 1 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,747 | INFO     | ..............................
[2025-12-09 22:59:42] 2025-12-10 06:59:02,972 | INFO     | 
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | job summary report
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | --------------------------------------------------
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | PanDA job id: 6895368126
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | task id: 47556137
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | errors: (none)
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | pilot state: finished 
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | transexitcode: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | exeerrorcode: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | exeerrordiag: 
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | exitcode: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:02,973 | INFO     | exitmsg: OK
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | cpuconsumptiontime: 206423 s
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | nevents: 1000
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | neventsw: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | pid: 129826
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | pgrp: 129826
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | corecount: 10
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | event service: False
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | sizes: {0: 2284107, 1: 2284306, 12: 2284596, 23: 2284596, 49498: 2333393, 49504: 2342599, 49516: 2342789}
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | --------------------------------------------------
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | 
[2025-12-09 22:59:42] 2025-12-10 06:59:02,974 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc242/slots/1
[2025-12-09 22:59:42] 2025-12-10 06:59:03,014 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 22:59:42] 2025-12-10 06:59:03,016 | INFO     | job 6895368126 has completed (purged errors)
[2025-12-09 22:59:42] 2025-12-10 06:59:03,016 | INFO     | overall cleanup function is called
[2025-12-09 22:59:42] 2025-12-10 06:59:04,047 | INFO     | --- collectZombieJob: --- 10, [129826]
[2025-12-09 22:59:42] 2025-12-10 06:59:04,048 | INFO     | zombie collector waiting for pid 129826
[2025-12-09 22:59:42] 2025-12-10 06:59:04,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 22:59:42] 2025-12-10 06:59:04,048 | INFO     | collected zombie processes
[2025-12-09 22:59:42] 2025-12-10 06:59:04,048 | INFO     | will attempt to kill all subprocesses of pid=129826
[2025-12-09 22:59:42] 2025-12-10 06:59:04,468 | INFO     | process IDs to be killed: [129826] (in reverse order)
[2025-12-09 22:59:42] 2025-12-10 06:59:04,625 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 22:59:42] 2025-12-10 06:59:04,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 22:59:42] 2025-12-10 06:59:04,634 | INFO     | did not find any defunct processes belonging to 129826
[2025-12-09 22:59:42] 2025-12-10 06:59:04,644 | INFO     | did not find any defunct processes belonging to 129826
[2025-12-09 22:59:42] 2025-12-10 06:59:04,648 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 22:59:42] 2025-12-10 06:59:04,648 | INFO     | ready for new job
[2025-12-09 22:59:42] 2025-12-10 06:59:04,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 22:59:42] 2025-12-10 06:59:04,656 | INFO     | ***************************************
[2025-12-09 22:59:42] 2025-12-10 06:59:04,657 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 22:59:42] 2025-12-10 06:59:04,658 | INFO     | ***************************************
[2025-12-09 22:59:42] 2025-12-10 06:59:04,658 | INFO     | 
[2025-12-09 22:59:42] 2025-12-10 06:59:04,659 | INFO     | architecture information:
[2025-12-09 22:59:42] 2025-12-10 06:59:04,662 | INFO     | executing command: cat /etc/os-release
[2025-12-09 22:59:42] 2025-12-10 06:59:04,693 | INFO     | cat /etc/os-release:
[2025-12-09 22:59:42] NAME="CentOS Linux"
[2025-12-09 22:59:42] VERSION="7 (Core)"
[2025-12-09 22:59:42] ID="centos"
[2025-12-09 22:59:42] ID_LIKE="rhel fedora"
[2025-12-09 22:59:42] VERSION_ID="7"
[2025-12-09 22:59:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 22:59:42] ANSI_COLOR="0;31"
[2025-12-09 22:59:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 22:59:42] HOME_URL="https://www.centos.org/"
[2025-12-09 22:59:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 22:59:42] 
[2025-12-09 22:59:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 22:59:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 22:59:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 22:59:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 22:59:42] 
[2025-12-09 22:59:42] 2025-12-10 06:59:04,693 | INFO     | ***************************************
[2025-12-09 22:59:42] 2025-12-10 06:59:05,197 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc242/slots/1
[2025-12-09 22:59:42] 2025-12-10 06:59:05,237 | INFO     | sufficient remaining disk space (86519054336 B)
[2025-12-09 22:59:42] 2025-12-10 06:59:05,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 22:59:42] 2025-12-10 06:59:05,237 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 22:59:42] 2025-12-10 06:59:05,237 | INFO     | update_server=False
[2025-12-09 22:59:42] 2025-12-10 06:59:05,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 22:59:42] 2025-12-10 06:59:05,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 22:59:42] 2025-12-10 06:59:05,238 | INFO     | aborting loop
[2025-12-09 22:59:42] 2025-12-10 06:59:05,615 | INFO     | all data control threads have been joined
[2025-12-09 22:59:42] 2025-12-10 06:59:05,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 22:59:42] 2025-12-10 06:59:05,819 | INFO     | all payload control threads have been joined
[2025-12-09 22:59:42] 2025-12-10 06:59:05,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 22:59:42] 2025-12-10 06:59:06,243 | INFO     | [job] job monitor thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,243 | INFO     | [job] retrieve thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,342 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,634 | INFO     | [data] control thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,643 | INFO     | [payload] validate_post thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,661 | INFO     | [job] validate thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,715 | INFO     | all job control threads have been joined
[2025-12-09 22:59:42] 2025-12-10 06:59:06,750 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:06,824 | INFO     | [payload] control thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,035 | INFO     | [data] copytool_in thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,035 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,188 | INFO     | [payload] failed_post thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,721 | INFO     | [job] control thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,770 | INFO     | [data] copytool_out thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:07,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 22:59:42] 2025-12-10 06:59:08,871 | INFO     | [job] queue monitor thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:09,973 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 22:59:42] 2025-12-10 06:59:35,099 | INFO     | PID=123114 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-09 22:59:42] 2025-12-10 06:59:35,099 | INFO     | .. there are 5 such processes running
[2025-12-09 22:59:42] 2025-12-10 06:59:35,099 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 22:59:42] 2025-12-10 06:59:35,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 22:59:42] 2025-12-10 06:59:35,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 22:59:42] 2025-12-10 06:59:36,352 | INFO     | [monitor] cgroup control has ended
[2025-12-09 22:59:42] 2025-12-10 06:59:37,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135538678945600)>', '<ExcThread(monitor, started 135538329761536)>']
[2025-12-09 22:59:42] 2025-12-10 06:59:38,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 22:59:42] 2025-12-10 06:59:38,117 | INFO     | [monitor] control thread has ended
[2025-12-09 22:59:42] 2025-12-10 06:59:42,489 | INFO     | all workflow threads have been joined
[2025-12-09 22:59:42] 2025-12-10 06:59:42,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 22:59:42] 2025-12-10 06:59:42,490 | INFO     | traces error code: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:42,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 22:59:42] 2025-12-10 06:59:42,625 [wrapper] ==== pilot stdout END ====
[2025-12-09 22:59:42] 2025-12-10 06:59:42,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 22:59:42] 2025-12-10 06:59:42,635 [wrapper] pilotpid: 123114
[2025-12-09 22:59:42] 2025-12-10 06:59:42,641 [wrapper] Pilot exit status: 0
[2025-12-09 22:59:42] 2025-12-10 06:59:42,660 [wrapper] pandaids: 6895368126
[2025-12-09 22:59:42] 2025-12-10 06:59:42,752 [wrapper] cleanup supervisor_pilot  793481 123115
[2025-12-09 22:59:42] 2025-12-10 06:59:42,759 [wrapper] Test setup, not cleaning
[2025-12-09 22:59:42] 2025-12-10 06:59:42,765 [wrapper] apfmon messages muted
[2025-12-09 22:59:42] 2025-12-10 06:59:42,771 [wrapper] ==== wrapper stdout END ====
[2025-12-09 22:59:42] 2025-12-10 06:59:42,776 [wrapper] ==== wrapper stderr END ====
[2025-12-09 22:59:42]  *** Error codes and diagnostics ***
[2025-12-09 22:59:42]     "exeErrorCode": 0,
[2025-12-09 22:59:42]     "exeErrorDiag": "",
[2025-12-09 22:59:42]     "pilotErrorCode": 0,
[2025-12-09 22:59:42]     "pilotErrorDiag": "",
[2025-12-09 22:59:42]  *** Listing of results directory ***
[2025-12-09 22:59:42] total 1323004
[2025-12-09 22:59:42] -rw-r--r-- 1 root root    576529 Nov 23 11:15 pilot3.tar.gz
[2025-12-09 22:59:42] -rwx------ 1 4871 1028     36292 Nov 23 11:21 runpilot2-wrapper.sh
[2025-12-09 22:59:42] -rw-r--r-- 1 root root      5112 Nov 23 11:21 queuedata.json
[2025-12-09 22:59:42] -rw-r--r-- 1 root root       100 Dec  9 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 22:59:42] -rwxr-xr-x 1 root root      7986 Dec  9 09:12 run_atlas
[2025-12-09 22:59:42] -rw-r--r-- 1 root root       105 Dec  9 09:12 job.xml
[2025-12-09 22:59:42] -rw-r--r-- 2 root root 411293955 Dec  9 09:12 EVNT.47483658._000864.pool.root.1
[2025-12-09 22:59:42] drwxrwx--x 2 root root      4096 Dec  9 09:12 shared
[2025-12-09 22:59:42] -rw-r--r-- 2 root root    590100 Dec  9 09:12 input.tar.gz
[2025-12-09 22:59:42] -rw-r--r-- 2 root root     15847 Dec  9 09:12 start_atlas.sh
[2025-12-09 22:59:42] -rw-r--r-- 1 root root         0 Dec  9 09:12 boinc_setup_complete
[2025-12-09 22:59:42] -rw-r--r-- 1 root root         0 Dec  9 09:12 boinc_lockfile
[2025-12-09 22:59:42] -rw-r--r-- 1 root root      2785 Dec  9 09:12 pandaJob.out
[2025-12-09 22:59:42] -rw------- 1 root root    979025 Dec  9 09:13 agis_schedconf.cvmfs.json
[2025-12-09 22:59:42] drwxr-xr-x 5  320  320      4096 Dec  9 09:13 pilot3
[2025-12-09 22:59:42] -rw-r--r-- 1 root root      9246 Dec  9 14:11 init_data.xml
[2025-12-09 22:59:42] -rw-r--r-- 1 root root       532 Dec  9 22:49 boinc_task_state.xml
[2025-12-09 22:59:42] -rw------- 1 root root 921115197 Dec  9 22:58 HITS.47556137._008509.pool.root.1
[2025-12-09 22:59:42] -rw------- 1 root root      1035 Dec  9 22:58 memory_monitor_summary.json
[2025-12-09 22:59:42] -rw------- 1 root root   1516240 Dec  9 22:58 agis_ddmendpoints.agis.ALL.json
[2025-12-09 22:59:42] -rw------- 1 root root   2263212 Dec  9 22:58 log.47556137._008509.job.log.tgz.1
[2025-12-09 22:59:42] -rw------- 1 root root      8567 Dec  9 22:59 heartbeat.json
[2025-12-09 22:59:42] -rw-r--r-- 1 root root      8192 Dec  9 22:59 boinc_mmap_file
[2025-12-09 22:59:42] -rw-r--r-- 1 root root        29 Dec  9 22:59 wrapper_checkpoint.txt
[2025-12-09 22:59:42] -rw------- 1 root root        95 Dec  9 22:59 pilot_heartbeat.json
[2025-12-09 22:59:42] -rw------- 1 root root      4836 Dec  9 22:59 pilotlog.txt
[2025-12-09 22:59:42] -rw------- 1 root root   6958026 Dec  9 22:59 log.47556137._008509.job.log.1
[2025-12-09 22:59:42] -rw------- 1 root root       353 Dec  9 22:59 output.list
[2025-12-09 22:59:42] -rw-r--r-- 1 root root       620 Dec  9 22:59 runtime_log
[2025-12-09 22:59:42] -rw------- 1 root root   9236480 Dec  9 22:59 result.tar.gz
[2025-12-09 22:59:42] -rw-r--r-- 1 root root      9021 Dec  9 22:59 runtime_log.err
[2025-12-09 22:59:42] -rw------- 1 root root       656 Dec  9 22:59 b4lNDmopUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms8KKDm2ZtXMo.diag
[2025-12-09 22:59:42] -rw-r--r-- 1 root root     21437 Dec  9 22:59 stderr.txt
[2025-12-09 22:59:42] HITS file was successfully produced:
[2025-12-09 22:59:42] -rw------- 1 root root 921115197 Dec  9 22:58 shared/HITS.pool.root.1
[2025-12-09 22:59:42]  *** Contents of shared directory: ***
[2025-12-09 22:59:42] total 1310808
[2025-12-09 22:59:42] -rw-r--r-- 2 root root 411293955 Dec  9 09:12 ATLAS.root_0
[2025-12-09 22:59:42] -rw-r--r-- 2 root root    590100 Dec  9 09:12 input.tar.gz
[2025-12-09 22:59:42] -rw-r--r-- 2 root root     15847 Dec  9 09:12 start_atlas.sh
[2025-12-09 22:59:42] -rw------- 1 root root 921115197 Dec  9 22:58 HITS.pool.root.1
[2025-12-09 22:59:42] -rw------- 1 root root   9236480 Dec  9 22:59 result.tar.gz
22:59:44 (119196): run_atlas exited; CPU time 206210.545348
22:59:44 (119196): called boinc_finish(0)

</stderr_txt>
]]>

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