Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:39 (2278226): wrapper (7.7.26015): starting
00:03:39 (2278226): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:03:39] Arguments: --nthreads 8
[2025-12-03 00:03:39] Threads: 8
[2025-12-03 00:03:39] Checking for CVMFS
[2025-12-03 00:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:03:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:03:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:03:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:03:41] 2.13.3.0 14106 39636 259812 153581 3 581 33255125 40960000 41450 16776704 0 506720025 99.750 332667648 46164 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 00:03:41] CVMFS is ok
[2025-12-03 00:03:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 00:03:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 00:03:41] Further information can be found at the LHC@home message board.
[2025-12-03 00:03:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:03:41] Checking for apptainer binary...
[2025-12-03 00:03:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 00:03:41] Running /usr/bin/apptainer --version
[2025-12-03 00:03:41] apptainer version 1.4.4-1.el9
[2025-12-03 00:03:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:03:42] c8-7-5.aglt2.org
[2025-12-03 00:03:42] apptainer works
[2025-12-03 00:03:42] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:03:42] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:03:42] Starting ATLAS job with PandaID=6897308926
[2025-12-03 00:03:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:20:05 (2278226): BOINC client no longer exists - exiting
05:20:05 (2278226): timer handler: client dead, exiting
05:29:55 (1802410): wrapper (7.7.26015): starting
05:29:55 (1802410): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 05:29:55] Arguments: --nthreads 8
[2025-12-03 05:29:55] Threads: 8
[2025-12-03 05:29:55] This job has been restarted, cleaning up previous attempt
[2025-12-03 05:29:55] Checking for CVMFS
[2025-12-03 05:29:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 05:29:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 05:29:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 05:29:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 05:29:56] 2.13.3.0 14106 39962 275180 153589 1 595 25176457 40960001 22224 16776704 0 508529626 99.748 335869606 46062 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-03 05:29:56] CVMFS is ok
[2025-12-03 05:29:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 05:29:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 05:29:56] Further information can be found at the LHC@home message board.
[2025-12-03 05:29:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 05:29:56] Checking for apptainer binary...
[2025-12-03 05:29:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 05:29:56] Running /usr/bin/apptainer --version
[2025-12-03 05:29:56] apptainer version 1.4.4-1.el9
[2025-12-03 05:29:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 05:29:56] c8-7-5.aglt2.org
[2025-12-03 05:29:56] apptainer works
[2025-12-03 05:29:56] Set ATHENA_PROC_NUMBER=8
[2025-12-03 05:29:56] Set ATHENA_CORE_NUMBER=8
[2025-12-03 05:29:56] Starting ATLAS job with PandaID=6897308926
[2025-12-03 05:29:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:38:59]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:38:59] 2025-12-03 17:38:09,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:38:59] 2025-12-03 17:38:09,831 | INFO     | time since job start (25682s) is within the limit (172800.0s)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,756 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 12:38:59] 2025-12-03 17:38:10,761 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.5747187499996
[2025-12-03 12:38:59] 2025-12-03 17:38:10,773 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897308926/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,774 | INFO     | extracted standard info from prmon json
[2025-12-03 12:38:59] 2025-12-03 17:38:10,774 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:38:59] 2025-12-03 17:38:10,774 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:38:59] 2025-12-03 17:38:10,778 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:38:59] 2025-12-03 17:38:10,778 | INFO     | sum of square deviations: 22973451154.961845
[2025-12-03 12:38:59] 2025-12-03 17:38:10,780 | INFO     | sum of deviations: 43054207395.633354
[2025-12-03 12:38:59] 2025-12-03 17:38:10,780 | INFO     | mean x: 1764770617.7761905
[2025-12-03 12:38:59] 2025-12-03 17:38:10,780 | INFO     | mean y: 3408278.283333333
[2025-12-03 12:38:59] 2025-12-03 17:38:10,781 | INFO     | intersect: -3303922417.089601
[2025-12-03 12:38:59] 2025-12-03 17:38:10,781 | INFO     | chi2: 8.066927250188048
[2025-12-03 12:38:59] 2025-12-03 17:38:10,781 | INFO     | sum of square deviations: 22162864541.720493
[2025-12-03 12:38:59] 2025-12-03 17:38:10,783 | INFO     | sum of deviations: 220361282995.29614
[2025-12-03 12:38:59] 2025-12-03 17:38:10,783 | INFO     | mean x: 1764770465.2915664
[2025-12-03 12:38:59] 2025-12-03 17:38:10,784 | INFO     | mean y: 3441652.113253012
[2025-12-03 12:38:59] 2025-12-03 17:38:10,784 | INFO     | intersect: -17543346272.876976
[2025-12-03 12:38:59] 2025-12-03 17:38:10,784 | INFO     | chi2: 4.41691573644761
[2025-12-03 12:38:59] 2025-12-03 17:38:10,784 | INFO     | current chi2=4.41691573644761 (change=45.24661498162578 %)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,784 | INFO     | sum of square deviations: 21371580615.778065
[2025-12-03 12:38:59] 2025-12-03 17:38:10,786 | INFO     | sum of deviations: 361501825801.0926
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | mean x: 1764770312.807317
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | mean y: 3468779.1024390245
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | intersect: -29847748202.406918
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | chi2: 1.7600472168962564
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | current chi2=1.7600472168962564 (change=60.152121482131584 %)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,787 | INFO     | sum of square deviations: 20599267025.175335
[2025-12-03 12:38:59] 2025-12-03 17:38:10,789 | INFO     | sum of deviations: 355649235252.8296
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | mean x: 1764770160.3135803
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | mean y: 3467619.1037037037
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | intersect: -30465536794.76553
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | chi2: 1.755068105304616
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | current chi2=1.755068105304616 (change=0.282896478221807 %)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | right removable region: 404
[2025-12-03 12:38:59] 2025-12-03 17:38:10,790 | INFO     | sum of square deviations: 22162588458.87706
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | sum of deviations: -60149751679.39759
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | mean x: 1764770770.286747
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | mean y: 3427594.9277108433
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | intersect: 4793054212.809939
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | chi2: 6.431666327477294
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | current chi2=6.431666327477294 (change=20.27117478557445 %)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | left removable region: 10
[2025-12-03 12:38:59] 2025-12-03 17:38:10,793 | INFO     | sum of square deviations: 18965872855.606518
[2025-12-03 12:38:59] 2025-12-03 17:38:10,795 | INFO     | sum of deviations: 239287796558.42883
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | mean x: 1764770434.8299491
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | mean y: 3490603.946700508
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | intersect: -22262187964.972206
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | chi2: 0.043600557720924416
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | current memory leak: 12.62 B/s (using 394 data points, chi2=0.04)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,796 | INFO     | could have reported an average CPU frequency of 3791 MHz (17 samples)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | ..............................
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . Timing measurements:
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . get job = 0 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . initial setup = 2 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . payload setup = 9 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . stage-in = 0 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . payload execution = 25618 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . stage-out = 4 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | . log creation = 1 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,797 | INFO     | ..............................
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | 
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | job summary report
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | --------------------------------------------------
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | PanDA job id: 6897308926
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | task id: 47531058
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | errors: (none)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | pilot state: finished 
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | transexitcode: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | exeerrorcode: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | exeerrordiag: 
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | exitcode: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | exitmsg: OK
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | cpuconsumptiontime: 118338 s
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | nevents: 1000
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | neventsw: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:10,927 | INFO     | pid: 1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | pgrp: 1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | corecount: 8
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | event service: False
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | sizes: {0: 2284272, 1: 2284471, 5: 2284733, 11: 2284789, 25632: 2341072, 25637: 2350066, 25640: 2350250, 25668: 2350560}
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | --------------------------------------------------
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | 
[2025-12-03 12:38:59] 2025-12-03 17:38:10,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-03 12:38:59] 2025-12-03 17:38:10,985 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,990 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:38:59] 2025-12-03 17:38:10,991 | INFO     | job 6897308926 has completed (purged errors)
[2025-12-03 12:38:59] 2025-12-03 17:38:10,991 | INFO     | overall cleanup function is called
[2025-12-03 12:38:59] 2025-12-03 17:38:12,045 | INFO     | --- collectZombieJob: --- 10, [1910475]
[2025-12-03 12:38:59] 2025-12-03 17:38:12,045 | INFO     | zombie collector waiting for pid 1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:12,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:38:59] 2025-12-03 17:38:12,045 | INFO     | collected zombie processes
[2025-12-03 12:38:59] 2025-12-03 17:38:12,045 | INFO     | will attempt to kill all subprocesses of pid=1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:13,629 | INFO     | process IDs to be killed: [1910475] (in reverse order)
[2025-12-03 12:38:59] 2025-12-03 17:38:13,915 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:38:59] 2025-12-03 17:38:13,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:38:59] 2025-12-03 17:38:14,004 | INFO     | did not find any defunct processes belonging to 1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:14,117 | INFO     | did not find any defunct processes belonging to 1910475
[2025-12-03 12:38:59] 2025-12-03 17:38:14,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:38:59] 2025-12-03 17:38:14,133 | INFO     | ready for new job
[2025-12-03 12:38:59] 2025-12-03 17:38:14,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:38:59] 2025-12-03 17:38:14,135 | INFO     | ***************************************
[2025-12-03 12:38:59] 2025-12-03 17:38:14,160 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:38:59] 2025-12-03 17:38:14,160 | INFO     | ***************************************
[2025-12-03 12:38:59] 2025-12-03 17:38:14,160 | INFO     | 
[2025-12-03 12:38:59] 2025-12-03 17:38:14,181 | INFO     | architecture information:
[2025-12-03 12:38:59] 2025-12-03 17:38:14,190 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:38:59] 2025-12-03 17:38:14,235 | INFO     | cat /etc/os-release:
[2025-12-03 12:38:59] NAME="CentOS Linux"
[2025-12-03 12:38:59] VERSION="7 (Core)"
[2025-12-03 12:38:59] ID="centos"
[2025-12-03 12:38:59] ID_LIKE="rhel fedora"
[2025-12-03 12:38:59] VERSION_ID="7"
[2025-12-03 12:38:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:38:59] ANSI_COLOR="0;31"
[2025-12-03 12:38:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:38:59] HOME_URL="https://www.centos.org/"
[2025-12-03 12:38:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:38:59] 
[2025-12-03 12:38:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:38:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:38:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:38:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:38:59] 
[2025-12-03 12:38:59] 2025-12-03 17:38:14,235 | INFO     | ***************************************
[2025-12-03 12:38:59] 2025-12-03 17:38:14,739 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-03 12:38:59] 2025-12-03 17:38:14,804 | INFO     | sufficient remaining disk space (166582026240 B)
[2025-12-03 12:38:59] 2025-12-03 17:38:14,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:38:59] 2025-12-03 17:38:14,805 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:38:59] 2025-12-03 17:38:14,805 | INFO     | update_server=False
[2025-12-03 12:38:59] 2025-12-03 17:38:14,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:38:59] 2025-12-03 17:38:15,216 | INFO     | all data control threads have been joined
[2025-12-03 12:38:59] 2025-12-03 17:38:15,387 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:38:59] 2025-12-03 17:38:15,387 | INFO     | aborting loop
[2025-12-03 12:38:59] 2025-12-03 17:38:15,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:38:59] 2025-12-03 17:38:15,811 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:15,834 | INFO     | all payload control threads have been joined
[2025-12-03 12:38:59] 2025-12-03 17:38:15,843 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:15,852 | INFO     | all job control threads have been joined
[2025-12-03 12:38:59] 2025-12-03 17:38:15,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:38:59] 2025-12-03 17:38:15,995 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,222 | INFO     | [data] control thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:38:59] 2025-12-03 17:38:16,290 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,393 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,484 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,643 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,832 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,840 | INFO     | [payload] control thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,858 | INFO     | [job] control thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,919 | INFO     | [job] validate thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:16,946 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:17,476 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:20,234 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:25,289 | INFO     | job.realtimelogging is not enabled
[2025-12-03 12:38:59] 2025-12-03 17:38:26,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:38:59] 2025-12-03 17:38:45,682 | INFO     | PID=1828902 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 12:38:59] 2025-12-03 17:38:45,682 | INFO     | .. there are 26 such processes running
[2025-12-03 12:38:59] 2025-12-03 17:38:45,682 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:38:59] 2025-12-03 17:38:45,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:38:59] 2025-12-03 17:38:45,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:38:59] 2025-12-03 17:38:50,998 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:38:59] 2025-12-03 17:38:53,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656609806144)>', '<ExcThread(monitor, started 139656255481600)>']
[2025-12-03 12:38:59] 2025-12-03 17:38:53,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:38:59] 2025-12-03 17:38:53,743 | INFO     | [monitor] control thread has ended
[2025-12-03 12:38:59] 2025-12-03 17:38:58,074 | INFO     | all workflow threads have been joined
[2025-12-03 12:38:59] 2025-12-03 17:38:58,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:38:59] 2025-12-03 17:38:58,074 | INFO     | traces error code: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:58,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:38:59] 2025-12-03 17:38:58,681 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:38:59] 2025-12-03 17:38:58,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:38:59] 2025-12-03 17:38:58,767 [wrapper] pilotpid: 1828902
[2025-12-03 12:38:59] 2025-12-03 17:38:58,790 [wrapper] Pilot exit status: 0
[2025-12-03 12:38:59] 2025-12-03 17:38:58,944 [wrapper] pandaids: 6897308926 6897308926
[2025-12-03 12:38:59] 2025-12-03 17:38:59,288 [wrapper] cleanup supervisor_pilot 1700030 1828904
[2025-12-03 12:38:59] 2025-12-03 17:38:59,321 [wrapper] Test setup, not cleaning
[2025-12-03 12:38:59] 2025-12-03 17:38:59,344 [wrapper] apfmon messages muted
[2025-12-03 12:38:59] 2025-12-03 17:38:59,362 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:38:59] 2025-12-03 17:38:59,404 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:38:59]  *** Error codes and diagnostics ***
[2025-12-03 12:38:59]     "exeErrorCode": 0,
[2025-12-03 12:38:59]     "exeErrorDiag": "",
[2025-12-03 12:38:59]     "pilotErrorCode": 0,
[2025-12-03 12:38:59]     "pilotErrorDiag": "",
[2025-12-03 12:38:59]  *** Listing of results directory ***
[2025-12-03 12:38:59] total 1425820
[2025-12-03 12:38:59] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-03 12:38:59] -rwx------. 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas       100 Dec  3 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:38:59] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 00:03 run_atlas
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas       105 Dec  3 00:03 job.xml
[2025-12-03 12:38:59] -rw-r--r--. 3 boincer umatlas 376137668 Dec  3 00:03 EVNT.47531050._000467.pool.root.1
[2025-12-03 12:38:59] -rw-r--r--. 3 boincer umatlas 376137668 Dec  3 00:03 ATLAS.root_0
[2025-12-03 12:38:59] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:03 start_atlas.sh
[2025-12-03 12:38:59] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 00:03 shared
[2025-12-03 12:38:59] -rw-r--r--. 2 boincer umatlas    590115 Dec  3 00:03 input.tar.gz
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas         0 Dec  3 00:03 boinc_lockfile
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas      2875 Dec  3 05:29 pandaJob.out
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas        57 Dec  3 05:29 setup.sh.local
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas    985775 Dec  3 05:30 agis_schedconf.cvmfs.json
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas       533 Dec  3 12:26 boinc_task_state.xml
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas 693580834 Dec  3 12:37 HITS.47531058._000821.pool.root.1
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas      7174 Dec  3 12:37 init_data.xml
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas      1063 Dec  3 12:37 memory_monitor_summary.json
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas   1516240 Dec  3 12:37 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas   1777852 Dec  3 12:37 log.47531058._000821.job.log.tgz.1
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas        96 Dec  3 12:37 pilot_heartbeat.json
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas     28044 Dec  3 12:38 heartbeat.json
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas      4897 Dec  3 12:38 pilotlog.txt
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 12:38 boinc_mmap_file
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas        29 Dec  3 12:38 wrapper_checkpoint.txt
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas   3332458 Dec  3 12:38 log.47531058._000821.job.log.1
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas       353 Dec  3 12:38 output.list
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas       620 Dec  3 12:38 runtime_log
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas   5150720 Dec  3 12:38 result.tar.gz
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas       789 Dec  3 12:38 zU6KDmgtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWELKDmTPlWGo.diag
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas      9418 Dec  3 12:38 runtime_log.err
[2025-12-03 12:38:59] -rw-r--r--. 1 boincer umatlas     23599 Dec  3 12:38 stderr.txt
[2025-12-03 12:38:59] HITS file was successfully produced:
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas 693580834 Dec  3 12:37 shared/HITS.pool.root.1
[2025-12-03 12:38:59]  *** Contents of shared directory: ***
[2025-12-03 12:38:59] total 1050288
[2025-12-03 12:38:59] -rw-r--r--. 3 boincer umatlas 376137668 Dec  3 00:03 ATLAS.root_0
[2025-12-03 12:38:59] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 00:03 start_atlas.sh
[2025-12-03 12:38:59] -rw-r--r--. 2 boincer umatlas    590115 Dec  3 00:03 input.tar.gz
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas 693580834 Dec  3 12:37 HITS.pool.root.1
[2025-12-03 12:38:59] -rw-------. 1 boincer umatlas   5150720 Dec  3 12:38 result.tar.gz
12:39:22 (1802410): run_atlas exited; CPU time 118762.745365
12:39:22 (1802410): called boinc_finish(0)

</stderr_txt>
]]>

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