Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
21:48:36 (2108603): wrapper (7.7.26015): starting
21:48:36 (2108603): wrapper: running run_atlas (--nthreads 10)
[2025-12-07 21:48:36] Arguments: --nthreads 10
[2025-12-07 21:48:36] Threads: 10
[2025-12-07 21:48:36] Checking for CVMFS
[2025-12-07 21:48:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-07 21:48:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-07 21:48:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-07 21:48:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-07 21:48:37] 2.13.3.0 8606 9368 63260 153755 3 101 3556550 4096000 10845 130560 0 30470046 99.972 1008373 676 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-07 21:48:37] CVMFS is ok
[2025-12-07 21:48:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-07 21:48:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-07 21:48:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-07 21:48:37] Further information can be found at the LHC@home message board.
[2025-12-07 21:48:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-07 21:48:37] Checking for apptainer binary...
[2025-12-07 21:48:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-07 21:48:37] Running /usr/bin/apptainer --version
[2025-12-07 21:48:37] apptainer version 1.4.2
[2025-12-07 21:48:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-07 21:48:38] 3950x-linux
[2025-12-07 21:48:38] apptainer works
[2025-12-07 21:48:38] Set ATHENA_PROC_NUMBER=10
[2025-12-07 21:48:38] Set ATHENA_CORE_NUMBER=10
[2025-12-07 21:48:38] Starting ATLAS job with PandaID=6895365214
[2025-12-07 21:48:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc241/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 19:03:29]  *** The last 200 lines of the pilot log: ***
[2025-12-08 19:03:29] 2025-12-09 03:02:23,455 | INFO     | time since job start (76389s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:25,004 | INFO     | monitor loop #4984: job 0:6895365214 is in state 'finished'
[2025-12-08 19:03:29] 2025-12-09 03:02:25,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:03:29] 2025-12-09 03:02:25,463 | INFO     | time since job start (76391s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:27,473 | INFO     | time since job start (76393s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:27,507 | INFO     | monitor loop #4985: job 0:6895365214 is in state 'finished'
[2025-12-08 19:03:29] 2025-12-09 03:02:27,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:03:29] 2025-12-09 03:02:29,482 | INFO     | time since job start (76395s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:30,012 | INFO     | monitor loop #4986: job 0:6895365214 is in state 'finished'
[2025-12-08 19:03:29] 2025-12-09 03:02:30,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:03:29] 2025-12-09 03:02:31,487 | INFO     | time since job start (76397s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:32,514 | INFO     | monitor loop #4987: job 0:6895365214 is in state 'finished'
[2025-12-08 19:03:29] 2025-12-09 03:02:32,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 19:03:29] 2025-12-09 03:02:33,735 | INFO     | PID=2112498 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 19:03:29] 2025-12-09 03:02:33,735 | INFO     | .. there are 12 such processes running
[2025-12-08 19:03:29] 2025-12-09 03:02:34,424 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-08 19:03:29] 2025-12-09 03:02:34,438 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3400.1280312500003
[2025-12-08 19:03:29] 2025-12-09 03:02:34,453 | INFO     | using path: /var/lib/multiboinc/boinc241/slots/2/PanDA_Pilot-6895365214/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 19:03:29] 2025-12-09 03:02:34,454 | INFO     | extracted standard info from prmon json
[2025-12-08 19:03:29] 2025-12-09 03:02:34,454 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 19:03:29] 2025-12-09 03:02:34,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 19:03:29] 2025-12-09 03:02:34,500 | INFO     | fitting pss+swap vs Time
[2025-12-08 19:03:29] 2025-12-09 03:02:34,508 | INFO     | sum of square deviations: 607089103076.3599
[2025-12-08 19:03:29] 2025-12-09 03:02:34,638 | INFO     | sum of deviations: 2681592443066.516
[2025-12-08 19:03:29] 2025-12-09 03:02:34,638 | INFO     | mean x: 1765211164.5995204
[2025-12-08 19:03:29] 2025-12-09 03:02:34,639 | INFO     | mean y: 3128136.1966426857
[2025-12-08 19:03:29] 2025-12-09 03:02:34,639 | INFO     | intersect: -7794041826.861197
[2025-12-08 19:03:29] 2025-12-09 03:02:34,640 | INFO     | chi2: 14.301912450078133
[2025-12-08 19:03:29] 2025-12-09 03:02:34,648 | INFO     | sum of square deviations: 599840321883.817
[2025-12-08 19:03:29] 2025-12-09 03:02:34,753 | INFO     | time since job start (76400s) is within the limit (172800.0s)
[2025-12-08 19:03:29] 2025-12-09 03:02:34,753 | INFO     | 76406s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-08 19:03:29] 2025-12-09 03:02:34,777 | INFO     | sum of deviations: 3136256124805.856
[2025-12-08 19:03:29] 2025-12-09 03:02:34,777 | INFO     | mean x: 1765211012.1139648
[2025-12-08 19:03:29] 2025-12-09 03:02:34,777 | INFO     | mean y: 3137698.853130016
[2025-12-08 19:03:29] 2025-12-09 03:02:34,778 | INFO     | intersect: -9226241598.17496
[2025-12-08 19:03:29] 2025-12-09 03:02:34,779 | INFO     | chi2: 11.102715610779889
[2025-12-08 19:03:29] 2025-12-09 03:02:34,779 | INFO     | current chi2=11.102715610779889 (change=22.369014287182036 %)
[2025-12-08 19:03:29] 2025-12-09 03:02:34,779 | INFO     | right removable region: 1245
[2025-12-08 19:03:29] 2025-12-09 03:02:34,789 | INFO     | sum of square deviations: 599837575053.8163
[2025-12-08 19:03:29] 2025-12-09 03:02:34,879 | INFO     | sum of deviations: 2186972486230.7666
[2025-12-08 19:03:29] 2025-12-09 03:02:34,879 | INFO     | mean x: 1765211317.1139648
[2025-12-08 19:03:29] 2025-12-09 03:02:34,879 | INFO     | mean y: 3138536.128410915
[2025-12-08 19:03:29] 2025-12-09 03:02:34,879 | INFO     | intersect: -6432718008.145362
[2025-12-08 19:03:29] 2025-12-09 03:02:34,886 | INFO     | chi2: 10.922029472306477
[2025-12-08 19:03:29] 2025-12-09 03:02:34,886 | INFO     | current chi2=10.922029472306477 (change=23.63238475671966 %)
[2025-12-08 19:03:29] 2025-12-09 03:02:34,887 | INFO     | left removable region: 10
[2025-12-08 19:03:29] 2025-12-09 03:02:34,888 | INFO     | sum of square deviations: 584091559245.8109
[2025-12-08 19:03:29] 2025-12-09 03:02:34,999 | INFO     | sum of deviations: 2442144165907.0703
[2025-12-08 19:03:29] 2025-12-09 03:02:34,999 | INFO     | mean x: 1765211286.6421053
[2025-12-08 19:03:29] 2025-12-09 03:02:34,999 | INFO     | mean y: 3156122.771659919
[2025-12-08 19:03:29] 2025-12-09 03:02:34,999 | INFO     | intersect: -7377365607.130822
[2025-12-08 19:03:29] 2025-12-09 03:02:35,000 | INFO     | chi2: 6.023578042989585
[2025-12-08 19:03:29] 2025-12-09 03:02:35,000 | INFO     | current memory leak: 4.18 B/s (using 1235 data points, chi2=6.02)
[2025-12-08 19:03:29] 2025-12-09 03:02:35,007 | INFO     | could have reported an average CPU frequency of 3400 MHz (45 samples)
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | ..............................
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . Timing measurements:
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . get job = 0 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . initial setup = 5 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . payload setup = 22 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . stage-in = 0 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . payload execution = 76303 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . stage-out = 9 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | . log creation = 2 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,008 | INFO     | ..............................
[2025-12-08 19:03:29] 2025-12-09 03:02:35,309 | INFO     | 
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | job summary report
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | --------------------------------------------------
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | PanDA job id: 6895365214
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | task id: 47556137
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | errors: (none)
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | pilot state: finished 
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | transexitcode: 0
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | exeerrorcode: 0
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | exeerrordiag: 
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | exitcode: 0
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | exitmsg: OK
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | cpuconsumptiontime: 208371 s
[2025-12-08 19:03:29] 2025-12-09 03:02:35,310 | INFO     | nevents: 1000
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | neventsw: 0
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | pid: 2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | pgrp: 2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | corecount: 10
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | event service: False
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | sizes: {0: 2284158, 1: 2284357, 2: 2284385, 13: 2284385, 19: 2284703, 24: 2284731, 76330: 2347745, 76340: 2356767, 76341: 2356823, 76360: 2357069}
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | --------------------------------------------------
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | 
[2025-12-08 19:03:29] 2025-12-09 03:02:35,311 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc241/slots/2
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 19:03:29] 2025-12-09 03:02:35,376 | INFO     | job 6895365214 has completed (purged errors)
[2025-12-08 19:03:29] 2025-12-09 03:02:35,377 | INFO     | overall cleanup function is called
[2025-12-08 19:03:29] 2025-12-09 03:02:36,417 | INFO     | --- collectZombieJob: --- 10, [2123496]
[2025-12-08 19:03:29] 2025-12-09 03:02:36,418 | INFO     | zombie collector waiting for pid 2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:36,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 19:03:29] 2025-12-09 03:02:36,418 | INFO     | collected zombie processes
[2025-12-08 19:03:29] 2025-12-09 03:02:36,418 | INFO     | will attempt to kill all subprocesses of pid=2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:37,352 | INFO     | process IDs to be killed: [2123496] (in reverse order)
[2025-12-08 19:03:29] 2025-12-09 03:02:37,620 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 19:03:29] 2025-12-09 03:02:37,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 19:03:29] 2025-12-09 03:02:37,655 | INFO     | did not find any defunct processes belonging to 2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:37,685 | INFO     | did not find any defunct processes belonging to 2123496
[2025-12-08 19:03:29] 2025-12-09 03:02:37,692 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 19:03:29] 2025-12-09 03:02:37,692 | INFO     | ready for new job
[2025-12-08 19:03:29] 2025-12-09 03:02:37,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 19:03:29] 2025-12-09 03:02:37,723 | INFO     | ***************************************
[2025-12-08 19:03:29] 2025-12-09 03:02:37,723 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 19:03:29] 2025-12-09 03:02:37,723 | INFO     | ***************************************
[2025-12-08 19:03:29] 2025-12-09 03:02:37,723 | INFO     | 
[2025-12-08 19:03:29] 2025-12-09 03:02:37,731 | INFO     | architecture information:
[2025-12-08 19:03:29] 2025-12-09 03:02:37,732 | INFO     | executing command: cat /etc/os-release
[2025-12-08 19:03:29] 2025-12-09 03:02:37,791 | INFO     | cat /etc/os-release:
[2025-12-08 19:03:29] NAME="CentOS Linux"
[2025-12-08 19:03:29] VERSION="7 (Core)"
[2025-12-08 19:03:29] ID="centos"
[2025-12-08 19:03:29] ID_LIKE="rhel fedora"
[2025-12-08 19:03:29] VERSION_ID="7"
[2025-12-08 19:03:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 19:03:29] ANSI_COLOR="0;31"
[2025-12-08 19:03:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 19:03:29] HOME_URL="https://www.centos.org/"
[2025-12-08 19:03:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 19:03:29] 
[2025-12-08 19:03:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 19:03:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 19:03:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 19:03:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 19:03:29] 
[2025-12-08 19:03:29] 2025-12-09 03:02:37,792 | INFO     | ***************************************
[2025-12-08 19:03:29] 2025-12-09 03:02:38,298 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc241/slots/2
[2025-12-08 19:03:29] 2025-12-09 03:02:38,375 | INFO     | sufficient remaining disk space (71015858176 B)
[2025-12-08 19:03:29] 2025-12-09 03:02:38,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 19:03:29] 2025-12-09 03:02:38,375 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 19:03:29] 2025-12-09 03:02:38,376 | INFO     | update_server=False
[2025-12-08 19:03:29] 2025-12-09 03:02:38,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 19:03:29] 2025-12-09 03:02:38,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 19:03:29] 2025-12-09 03:02:38,558 | INFO     | aborting loop
[2025-12-08 19:03:29] 2025-12-09 03:02:38,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 19:03:29] 2025-12-09 03:02:38,896 | INFO     | all job control threads have been joined
[2025-12-08 19:03:29] 2025-12-09 03:02:39,287 | INFO     | all data control threads have been joined
[2025-12-08 19:03:29] 2025-12-09 03:02:39,388 | INFO     | [job] retrieve thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:39,435 | INFO     | all payload control threads have been joined
[2025-12-08 19:03:29] 2025-12-09 03:02:39,563 | INFO     | [job] job monitor thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:39,566 | INFO     | [payload] validate_post thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:39,735 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:39,859 | INFO     | [payload] failed_post thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:39,902 | INFO     | [job] control thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,055 | INFO     | [data] copytool_in thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,055 | INFO     | [job] validate thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,061 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,082 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,293 | INFO     | [data] control thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,360 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 19:03:29] 2025-12-09 03:02:40,441 | INFO     | [payload] control thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:40,648 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 19:03:29] 2025-12-09 03:02:40,717 | INFO     | [data] copytool_out thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:41,366 | INFO     | [job] queue monitor thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:02:44,653 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 19:03:29] 2025-12-09 03:03:08,814 | INFO     | PID=2112498 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-08 19:03:29] 2025-12-09 03:03:08,814 | INFO     | .. there are 12 such processes running
[2025-12-08 19:03:29] 2025-12-09 03:03:08,814 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 19:03:29] 2025-12-09 03:03:08,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 19:03:29] 2025-12-09 03:03:08,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 19:03:29] 2025-12-09 03:03:21,822 | INFO     | [monitor] cgroup control has ended
[2025-12-08 19:03:29] 2025-12-09 03:03:23,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131711099402048)>', '<ExcThread(monitor, started 131710448551680)>']
[2025-12-08 19:03:29] 2025-12-09 03:03:23,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 19:03:29] 2025-12-09 03:03:23,901 | INFO     | [monitor] control thread has ended
[2025-12-08 19:03:29] 2025-12-09 03:03:28,593 | INFO     | all workflow threads have been joined
[2025-12-08 19:03:29] 2025-12-09 03:03:28,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 19:03:29] 2025-12-09 03:03:28,594 | INFO     | traces error code: 0
[2025-12-08 19:03:29] 2025-12-09 03:03:28,594 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 19:03:29] 2025-12-09 03:03:29,153 [wrapper] ==== pilot stdout END ====
[2025-12-08 19:03:29] 2025-12-09 03:03:29,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 19:03:29] 2025-12-09 03:03:29,187 [wrapper] pilotpid: 2112498
[2025-12-08 19:03:29] 2025-12-09 03:03:29,203 [wrapper] Pilot exit status: 0
[2025-12-08 19:03:29] 2025-12-09 03:03:29,263 [wrapper] pandaids: 6895365214
[2025-12-08 19:03:29] 2025-12-09 03:03:29,464 [wrapper] cleanup supervisor_pilot 3538564 2112499
[2025-12-08 19:03:29] 2025-12-09 03:03:29,474 [wrapper] Test setup, not cleaning
[2025-12-08 19:03:29] 2025-12-09 03:03:29,488 [wrapper] apfmon messages muted
[2025-12-08 19:03:29] 2025-12-09 03:03:29,503 [wrapper] ==== wrapper stdout END ====
[2025-12-08 19:03:29] 2025-12-09 03:03:29,522 [wrapper] ==== wrapper stderr END ====
[2025-12-08 19:03:29]  *** Error codes and diagnostics ***
[2025-12-08 19:03:29]     "exeErrorCode": 0,
[2025-12-08 19:03:29]     "exeErrorDiag": "",
[2025-12-08 19:03:29]     "pilotErrorCode": 0,
[2025-12-08 19:03:29]     "pilotErrorDiag": "",
[2025-12-08 19:03:29]  *** Listing of results directory ***
[2025-12-08 19:03:29] total 1313896
[2025-12-08 19:03:29] -rw-r--r-- 1 root root    576529 Nov 23 09:07 pilot3.tar.gz
[2025-12-08 19:03:29] -rw-r--r-- 1 root root      5112 Nov 23 09:09 queuedata.json
[2025-12-08 19:03:29] -rwx------ 1 4871 1028     36292 Nov 23 09:10 runpilot2-wrapper.sh
[2025-12-08 19:03:29] -rw-r--r-- 1 root root       100 Dec  7 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 19:03:29] -rwxr-xr-x 1 root root      7986 Dec  7 21:48 run_atlas
[2025-12-08 19:03:29] -rw-r--r-- 1 root root       105 Dec  7 21:48 job.xml
[2025-12-08 19:03:29] -rw-r--r-- 2 root root 408600904 Dec  7 21:48 EVNT.47483658._000819.pool.root.1
[2025-12-08 19:03:29] drwxrwx--x 2 root root      4096 Dec  7 21:48 shared
[2025-12-08 19:03:29] -rw-r--r-- 2 root root    590108 Dec  7 21:48 input.tar.gz
[2025-12-08 19:03:29] -rw-r--r-- 2 root root     15847 Dec  7 21:48 start_atlas.sh
[2025-12-08 19:03:29] -rw-r--r-- 1 root root         0 Dec  7 21:48 boinc_setup_complete
[2025-12-08 19:03:29] -rw-r--r-- 1 root root      9236 Dec  7 21:48 init_data.xml
[2025-12-08 19:03:29] -rw-r--r-- 1 root root         0 Dec  7 21:48 boinc_lockfile
[2025-12-08 19:03:29] -rw-r--r-- 1 root root      2786 Dec  7 21:48 pandaJob.out
[2025-12-08 19:03:29] -rw------- 1 root root    981501 Dec  7 21:49 agis_schedconf.cvmfs.json
[2025-12-08 19:03:29] drwxr-xr-x 5  320  320      4096 Dec  7 21:49 pilot3
[2025-12-08 19:03:29] -rw-r--r-- 1 root root       533 Dec  8 18:30 boinc_task_state.xml
[2025-12-08 19:03:29] -rw------- 1 root root 906881911 Dec  8 19:00 HITS.47556137._008060.pool.root.1
[2025-12-08 19:03:29] -rw------- 1 root root      1036 Dec  8 19:02 memory_monitor_summary.json
[2025-12-08 19:03:29] -rw------- 1 root root   1516240 Dec  8 19:02 agis_ddmendpoints.agis.ALL.json
[2025-12-08 19:03:29] -rw------- 1 root root   2587679 Dec  8 19:02 log.47556137._008060.job.log.tgz.1
[2025-12-08 19:03:29] -rw------- 1 root root      8567 Dec  8 19:02 heartbeat.json
[2025-12-08 19:03:29] -rw------- 1 root root        95 Dec  8 19:03 pilot_heartbeat.json
[2025-12-08 19:03:29] -rw-r--r-- 1 root root      8192 Dec  8 19:03 boinc_mmap_file
[2025-12-08 19:03:29] -rw-r--r-- 1 root root        29 Dec  8 19:03 wrapper_checkpoint.txt
[2025-12-08 19:03:29] -rw------- 1 root root      4838 Dec  8 19:03 pilotlog.txt
[2025-12-08 19:03:29] -rw------- 1 root root  10430717 Dec  8 19:03 log.47556137._008060.job.log.1
[2025-12-08 19:03:29] -rw------- 1 root root       353 Dec  8 19:03 output.list
[2025-12-08 19:03:29] -rw-r--r-- 1 root root       620 Dec  8 19:03 runtime_log
[2025-12-08 19:03:29] -rw------- 1 root root  13035520 Dec  8 19:03 result.tar.gz
[2025-12-08 19:03:29] -rw-r--r-- 1 root root      9021 Dec  8 19:03 runtime_log.err
[2025-12-08 19:03:29] -rw------- 1 root root       656 Dec  8 19:03 E0ILDmhmSh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJ3KKDmk2h7km.diag
[2025-12-08 19:03:29] -rw-r--r-- 1 root root     21989 Dec  8 19:03 stderr.txt
[2025-12-08 19:03:30] HITS file was successfully produced:
[2025-12-08 19:03:30] -rw------- 1 root root 906881911 Dec  8 19:00 shared/HITS.pool.root.1
[2025-12-08 19:03:30]  *** Contents of shared directory: ***
[2025-12-08 19:03:30] total 1297992
[2025-12-08 19:03:30] -rw-r--r-- 2 root root 408600904 Dec  7 21:48 ATLAS.root_0
[2025-12-08 19:03:30] -rw-r--r-- 2 root root    590108 Dec  7 21:48 input.tar.gz
[2025-12-08 19:03:30] -rw-r--r-- 2 root root     15847 Dec  7 21:48 start_atlas.sh
[2025-12-08 19:03:30] -rw------- 1 root root 906881911 Dec  8 19:00 HITS.pool.root.1
[2025-12-08 19:03:30] -rw------- 1 root root  13035520 Dec  8 19:03 result.tar.gz
19:03:31 (2108603): run_atlas exited; CPU time 208473.196151
19:03:31 (2108603): called boinc_finish(0)

</stderr_txt>
]]>

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