Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:06:19 (3570468): wrapper (7.7.26015): starting
04:06:19 (3570468): wrapper: running run_atlas (--nthreads 9)
[2025-12-03 04:06:19] Arguments: --nthreads 9
[2025-12-03 04:06:19] Threads: 9
[2025-12-03 04:06:19] Checking for CVMFS
[2025-12-03 04:06:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 04:06:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 04:06:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 04:06:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 04:06:19] 2.13.3.0 4548 3610 94996 153586 0 81 7929078 37030912 1932 16776704 0 4210998 99.820 812051 47242 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-03 04:06:19] CVMFS is ok
[2025-12-03 04:06:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 04:06:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 04:06:19] Further information can be found at the LHC@home message board.
[2025-12-03 04:06:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:06:19] Checking for apptainer binary...
[2025-12-03 04:06:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 04:06:19] Running /usr/bin/apptainer --version
[2025-12-03 04:06:19] apptainer version 1.4.4-1.el9
[2025-12-03 04:06:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:06:19] c-205-36.aglt2.org
[2025-12-03 04:06:19] apptainer works
[2025-12-03 04:06:20] Set ATHENA_PROC_NUMBER=9
[2025-12-03 04:06:20] Set ATHENA_CORE_NUMBER=9
[2025-12-03 04:06:20] Starting ATLAS job with PandaID=6895363906
[2025-12-03 04:06:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 11:06:13]  *** The last 200 lines of the pilot log: ***
[2025-12-03 11:06:13] 2025-12-03 16:05:18,726 | INFO     | monitor loop #1874: job 0:6895363906 is in state 'finished'
[2025-12-03 11:06:13] 2025-12-03 16:05:18,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 11:06:13] 2025-12-03 16:05:18,833 | INFO     | time since job start (25128s) is within the limit (172800.0s)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,617 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 11:06:13] 2025-12-03 16:05:20,620 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2769.1272812500006
[2025-12-03 11:06:13] 2025-12-03 16:05:20,624 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895363906/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,624 | INFO     | extracted standard info from prmon json
[2025-12-03 11:06:13] 2025-12-03 16:05:20,624 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 11:06:13] 2025-12-03 16:05:20,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 11:06:13] 2025-12-03 16:05:20,629 | INFO     | fitting pss+swap vs Time
[2025-12-03 11:06:13] 2025-12-03 16:05:20,629 | INFO     | sum of square deviations: 21685249056.706455
[2025-12-03 11:06:13] 2025-12-03 16:05:20,632 | INFO     | sum of deviations: 476455477700.09485
[2025-12-03 11:06:13] 2025-12-03 16:05:20,632 | INFO     | mean x: 1764765349.526699
[2025-12-03 11:06:13] 2025-12-03 16:05:20,632 | INFO     | mean y: 3053872.400485437
[2025-12-03 11:06:13] 2025-12-03 16:05:20,632 | INFO     | intersect: -38771327525.69001
[2025-12-03 11:06:13] 2025-12-03 16:05:20,633 | INFO     | chi2: 4.78694549994993
[2025-12-03 11:06:13] 2025-12-03 16:05:20,633 | INFO     | sum of square deviations: 20905274996.702667
[2025-12-03 11:06:13] 2025-12-03 16:05:20,635 | INFO     | sum of deviations: 597834457635.7567
[2025-12-03 11:06:13] 2025-12-03 16:05:20,636 | INFO     | mean x: 1764765197.0270271
[2025-12-03 11:06:13] 2025-12-03 16:05:20,636 | INFO     | mean y: 3077547.5675675673
[2025-12-03 11:06:13] 2025-12-03 16:05:20,636 | INFO     | intersect: -50464445342.49345
[2025-12-03 11:06:13] 2025-12-03 16:05:20,636 | INFO     | chi2: 2.2996287563453057
[2025-12-03 11:06:13] 2025-12-03 16:05:20,636 | INFO     | current chi2=2.2996287563453057 (change=51.96041491658179 %)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,637 | INFO     | sum of square deviations: 20144231524.19899
[2025-12-03 11:06:13] 2025-12-03 16:05:20,639 | INFO     | sum of deviations: 590182660735.2684
[2025-12-03 11:06:13] 2025-12-03 16:05:20,639 | INFO     | mean x: 1764765044.5273633
[2025-12-03 11:06:13] 2025-12-03 16:05:20,639 | INFO     | mean y: 3076000.1119402987
[2025-12-03 11:06:13] 2025-12-03 16:05:20,639 | INFO     | intersect: -51700744436.05479
[2025-12-03 11:06:13] 2025-12-03 16:05:20,639 | INFO     | chi2: 2.2592136417210327
[2025-12-03 11:06:13] 2025-12-03 16:05:20,640 | INFO     | current chi2=2.2592136417210327 (change=1.7574625692410866 %)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,640 | INFO     | right removable region: 401
[2025-12-03 11:06:13] 2025-12-03 16:05:20,640 | INFO     | sum of square deviations: 20905268286.702667
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | sum of deviations: 356296017020.4056
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | mean x: 1764765502.0270271
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | mean y: 3077300.5995085994
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | intersect: -30074456779.515465
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | chi2: 2.638044540985586
[2025-12-03 11:06:13] 2025-12-03 16:05:20,643 | INFO     | current chi2=2.638044540985586 (change=44.89085908721586 %)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,644 | INFO     | sum of square deviations: 20144218104.19899
[2025-12-03 11:06:13] 2025-12-03 16:05:20,646 | INFO     | sum of deviations: 327281731174.174
[2025-12-03 11:06:13] 2025-12-03 16:05:20,646 | INFO     | mean x: 1764765654.5273633
[2025-12-03 11:06:13] 2025-12-03 16:05:20,646 | INFO     | mean y: 3083113.7114427863
[2025-12-03 11:06:13] 2025-12-03 16:05:20,646 | INFO     | intersect: -28668943546.387432
[2025-12-03 11:06:13] 2025-12-03 16:05:20,647 | INFO     | chi2: 2.6055826310763197
[2025-12-03 11:06:13] 2025-12-03 16:05:20,647 | INFO     | current chi2=2.6055826310763197 (change=1.2305292577485558 %)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,647 | INFO     | left removable region: 20
[2025-12-03 11:06:13] 2025-12-03 16:05:20,647 | INFO     | sum of square deviations: 17149319189.737501
[2025-12-03 11:06:13] 2025-12-03 16:05:20,649 | INFO     | sum of deviations: 394253690317.5696
[2025-12-03 11:06:13] 2025-12-03 16:05:20,649 | INFO     | mean x: 1764765624.0262468
[2025-12-03 11:06:13] 2025-12-03 16:05:20,649 | INFO     | mean y: 3115909.6430446194
[2025-12-03 11:06:13] 2025-12-03 16:05:20,649 | INFO     | intersect: -40567903389.72928
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | chi2: 0.02923768470604867
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | current memory leak: 22.99 B/s (using 381 data points, chi2=0.03)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | could have reported an average CPU frequency of 2659 MHz (17 samples)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | ..............................
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | . Timing measurements:
[2025-12-03 11:06:13] 2025-12-03 16:05:20,650 | INFO     | . get job = 0 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . initial setup = 2 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . payload setup = 5 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . stage-in = 0 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . payload execution = 25096 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . stage-out = 2 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | . log creation = 0 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,651 | INFO     | ..............................
[2025-12-03 11:06:13] 2025-12-03 16:05:20,814 | INFO     | 
[2025-12-03 11:06:13] 2025-12-03 16:05:20,814 | INFO     | job summary report
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | --------------------------------------------------
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | PanDA job id: 6895363906
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | task id: 47556137
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | errors: (none)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | pilot state: finished 
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | transexitcode: 0
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | exeerrorcode: 0
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | exeerrordiag: 
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | exitcode: 0
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | exitmsg: OK
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | cpuconsumptiontime: 221210 s
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | nevents: 1000
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | neventsw: 0
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | pid: 3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | pgrp: 3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:20,815 | INFO     | corecount: 9
[2025-12-03 11:06:13] 2025-12-03 16:05:20,816 | INFO     | event service: False
[2025-12-03 11:06:13] 2025-12-03 16:05:20,816 | INFO     | sizes: {0: 2284143, 1: 2284342, 4: 2284604, 12: 2284632, 25105: 2321322, 25109: 2330316, 25110: 2330500, 25115: 2330810}
[2025-12-03 11:06:13] 2025-12-03 16:05:20,816 | INFO     | --------------------------------------------------
[2025-12-03 11:06:13] 2025-12-03 16:05:20,816 | INFO     | 
[2025-12-03 11:06:13] 2025-12-03 16:05:20,816 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 11:06:13] 2025-12-03 16:05:20,826 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,827 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | job 6895363906 has completed (purged errors)
[2025-12-03 11:06:13] 2025-12-03 16:05:20,828 | INFO     | overall cleanup function is called
[2025-12-03 11:06:13] 2025-12-03 16:05:21,840 | INFO     | --- collectZombieJob: --- 10, [3580604]
[2025-12-03 11:06:13] 2025-12-03 16:05:21,840 | INFO     | zombie collector waiting for pid 3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:21,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 11:06:13] 2025-12-03 16:05:21,840 | INFO     | collected zombie processes
[2025-12-03 11:06:13] 2025-12-03 16:05:21,840 | INFO     | will attempt to kill all subprocesses of pid=3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:21,951 | INFO     | process IDs to be killed: [3580604] (in reverse order)
[2025-12-03 11:06:13] 2025-12-03 16:05:21,982 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 11:06:13] 2025-12-03 16:05:21,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 11:06:13] 2025-12-03 16:05:21,985 | INFO     | did not find any defunct processes belonging to 3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:21,988 | INFO     | did not find any defunct processes belonging to 3580604
[2025-12-03 11:06:13] 2025-12-03 16:05:21,988 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 11:06:13] 2025-12-03 16:05:21,988 | INFO     | ready for new job
[2025-12-03 11:06:13] 2025-12-03 16:05:21,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 11:06:13] 2025-12-03 16:05:21,990 | INFO     | ***************************************
[2025-12-03 11:06:13] 2025-12-03 16:05:21,990 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 11:06:13] 2025-12-03 16:05:21,990 | INFO     | ***************************************
[2025-12-03 11:06:13] 2025-12-03 16:05:21,990 | INFO     | 
[2025-12-03 11:06:13] 2025-12-03 16:05:21,992 | INFO     | architecture information:
[2025-12-03 11:06:13] 2025-12-03 16:05:21,992 | INFO     | executing command: cat /etc/os-release
[2025-12-03 11:06:13] 2025-12-03 16:05:21,999 | INFO     | cat /etc/os-release:
[2025-12-03 11:06:13] NAME="CentOS Linux"
[2025-12-03 11:06:13] VERSION="7 (Core)"
[2025-12-03 11:06:13] ID="centos"
[2025-12-03 11:06:13] ID_LIKE="rhel fedora"
[2025-12-03 11:06:13] VERSION_ID="7"
[2025-12-03 11:06:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 11:06:13] ANSI_COLOR="0;31"
[2025-12-03 11:06:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 11:06:13] HOME_URL="https://www.centos.org/"
[2025-12-03 11:06:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 11:06:13] 
[2025-12-03 11:06:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 11:06:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 11:06:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 11:06:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 11:06:13] 
[2025-12-03 11:06:13] 2025-12-03 16:05:21,999 | INFO     | ***************************************
[2025-12-03 11:06:13] 2025-12-03 16:05:22,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 11:06:13] 2025-12-03 16:05:22,510 | INFO     | sufficient remaining disk space (40703623168 B)
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | INFO     | update_server=False
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 11:06:13] 2025-12-03 16:05:22,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 11:06:13] 2025-12-03 16:05:22,512 | INFO     | aborting loop
[2025-12-03 11:06:13] 2025-12-03 16:05:22,936 | INFO     | all payload control threads have been joined
[2025-12-03 11:06:13] 2025-12-03 16:05:23,298 | INFO     | all data control threads have been joined
[2025-12-03 11:06:13] 2025-12-03 16:05:23,515 | INFO     | [job] queue monitor thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:23,516 | INFO     | [job] retrieve thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:23,517 | INFO     | [job] job monitor thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:23,579 | INFO     | [job] validate thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:23,606 | INFO     | all job control threads have been joined
[2025-12-03 11:06:13] 2025-12-03 16:05:23,942 | INFO     | [payload] control thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,147 | INFO     | [payload] validate_post thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,303 | INFO     | [data] control thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,517 | INFO     | [data] copytool_out thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,611 | INFO     | [job] control thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,631 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,782 | INFO     | [data] copytool_in thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,793 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,806 | INFO     | [payload] failed_post thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:24,845 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:25,002 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:25,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 11:06:13] 2025-12-03 16:05:29,967 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 11:06:13] 2025-12-03 16:05:52,037 | INFO     | PID=3574159 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 11:06:13] 2025-12-03 16:05:52,038 | INFO     | .. there are 2 such processes running
[2025-12-03 11:06:13] 2025-12-03 16:05:52,038 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 11:06:13] 2025-12-03 16:05:52,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 11:06:13] 2025-12-03 16:05:52,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 11:06:13] 2025-12-03 16:06:06,897 | INFO     | [monitor] cgroup control has ended
[2025-12-03 11:06:13] 2025-12-03 16:06:08,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140121270695744)>', '<ExcThread(monitor, started 140120422348544)>']
[2025-12-03 11:06:13] 2025-12-03 16:06:09,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 11:06:13] 2025-12-03 16:06:09,120 | INFO     | [monitor] control thread has ended
[2025-12-03 11:06:13] 2025-12-03 16:06:13,213 | INFO     | all workflow threads have been joined
[2025-12-03 11:06:13] 2025-12-03 16:06:13,214 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 11:06:13] 2025-12-03 16:06:13,214 | INFO     | traces error code: 0
[2025-12-03 11:06:13] 2025-12-03 16:06:13,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 11:06:13] 2025-12-03 16:06:13,285 [wrapper] ==== pilot stdout END ====
[2025-12-03 11:06:13] 2025-12-03 16:06:13,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 11:06:13] 2025-12-03 16:06:13,288 [wrapper] pilotpid: 3574159
[2025-12-03 11:06:13] 2025-12-03 16:06:13,290 [wrapper] Pilot exit status: 0
[2025-12-03 11:06:13] 2025-12-03 16:06:13,296 [wrapper] pandaids: 6895363906
[2025-12-03 11:06:13] 2025-12-03 16:06:13,317 [wrapper] cleanup supervisor_pilot 3933307 3574160
[2025-12-03 11:06:13] 2025-12-03 16:06:13,319 [wrapper] Test setup, not cleaning
[2025-12-03 11:06:13] 2025-12-03 16:06:13,320 [wrapper] apfmon messages muted
[2025-12-03 11:06:13] 2025-12-03 16:06:13,322 [wrapper] ==== wrapper stdout END ====
[2025-12-03 11:06:13] 2025-12-03 16:06:13,323 [wrapper] ==== wrapper stderr END ====
[2025-12-03 11:06:13]  *** Error codes and diagnostics ***
[2025-12-03 11:06:13]     "exeErrorCode": 0,
[2025-12-03 11:06:13]     "exeErrorDiag": "",
[2025-12-03 11:06:13]     "pilotErrorCode": 0,
[2025-12-03 11:06:13]     "pilotErrorDiag": "",
[2025-12-03 11:06:13]  *** Listing of results directory ***
[2025-12-03 11:06:13] total 1310552
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 10:18 pilot3.tar.gz
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:38 queuedata.json
[2025-12-03 11:06:13] -rwx------. 1 boincer umatlas     36292 Nov 23 10:38 runpilot2-wrapper.sh
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas       100 Dec  3 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 11:06:13] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  3 04:06 run_atlas
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas       105 Dec  3 04:06 job.xml
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas 409765681 Dec  3 04:06 EVNT.47483658._000797.pool.root.1
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 04:06 start_atlas.sh
[2025-12-03 11:06:13] drwxrwx--x. 2 boincer umatlas      4096 Dec  3 04:06 shared
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas    590106 Dec  3 04:06 input.tar.gz
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas         0 Dec  3 04:06 boinc_lockfile
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas      2785 Dec  3 04:06 pandaJob.out
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas    985766 Dec  3 04:06 agis_schedconf.cvmfs.json
[2025-12-03 11:06:13] drwx------. 5 boincer umatlas      4096 Dec  3 04:06 pilot3
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas       533 Dec  3 10:58 boinc_task_state.xml
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas      6527 Dec  3 11:04 init_data.xml
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas 917522570 Dec  3 11:04 HITS.47556137._007834.pool.root.1
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas        95 Dec  3 11:04 pilot_heartbeat.json
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas      1045 Dec  3 11:05 memory_monitor_summary.json
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas   1516240 Dec  3 11:05 agis_ddmendpoints.agis.ALL.json
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas   1816922 Dec  3 11:05 log.47556137._007834.job.log.tgz.1
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas      8614 Dec  3 11:05 heartbeat.json
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 11:06 boinc_mmap_file
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas        29 Dec  3 11:06 wrapper_checkpoint.txt
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas      4823 Dec  3 11:06 pilotlog.txt
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas   3587743 Dec  3 11:06 log.47556137._007834.job.log.1
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas       353 Dec  3 11:06 output.list
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas       620 Dec  3 11:06 runtime_log
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas   5427200 Dec  3 11:06 result.tar.gz
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas      8818 Dec  3 11:06 runtime_log.err
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas       659 Dec  3 11:06 D4KLDmlLRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm10KKDm5lppUn.diag
[2025-12-03 11:06:13] -rw-r--r--. 1 boincer umatlas     21334 Dec  3 11:06 stderr.txt
[2025-12-03 11:06:13] HITS file was successfully produced:
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas 917522570 Dec  3 11:04 shared/HITS.pool.root.1
[2025-12-03 11:06:13]  *** Contents of shared directory: ***
[2025-12-03 11:06:13] total 1302084
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas 409765681 Dec  3 04:06 ATLAS.root_0
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas     15847 Dec  3 04:06 start_atlas.sh
[2025-12-03 11:06:13] -rw-r--r--. 2 boincer umatlas    590106 Dec  3 04:06 input.tar.gz
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas 917522570 Dec  3 11:04 HITS.pool.root.1
[2025-12-03 11:06:13] -rw-------. 1 boincer umatlas   5427200 Dec  3 11:06 result.tar.gz
11:06:15 (3570468): run_atlas exited; CPU time 221387.089875
11:06:15 (3570468): called boinc_finish(0)

</stderr_txt>
]]>

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