Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:17:52 (2136723): wrapper (7.7.26015): starting
22:17:52 (2136723): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 22:17:52] Arguments: --nthreads 8
[2025-12-02 22:17:52] Threads: 8
[2025-12-02 22:17:52] Checking for CVMFS
[2025-12-02 22:17:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 22:17:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 22:17:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 22:17:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 22:17:53] 2.13.3.0 12213 39580 341512 153579 1 476 30899890 40960000 34812 16776704 0 370969474 99.722 266400742 34135 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 22:17:53] CVMFS is ok
[2025-12-02 22:17:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 22:17:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 22:17:53] Further information can be found at the LHC@home message board.
[2025-12-02 22:17:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 22:17:53] Checking for apptainer binary...
[2025-12-02 22:17:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 22:17:53] Running /usr/bin/apptainer --version
[2025-12-02 22:17:53] apptainer version 1.4.4-1.el9
[2025-12-02 22:17:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 22:17:54] c7-3-35.aglt2.org
[2025-12-02 22:17:54] apptainer works
[2025-12-02 22:17:54] Set ATHENA_PROC_NUMBER=8
[2025-12-02 22:17:54] Set ATHENA_CORE_NUMBER=8
[2025-12-02 22:17:54] Starting ATLAS job with PandaID=6905025599
[2025-12-02 22:17:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 10:50:04]  *** The last 200 lines of the pilot log: ***
[2025-12-03 10:50:04] 2025-12-03 15:48:47,389 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 10:50:04] 2025-12-03 15:48:48,006 | INFO     | monitor loop #2471: job 0:6905025599 is in state 'finished'
[2025-12-03 10:50:04] 2025-12-03 15:48:48,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:50:04] 2025-12-03 15:48:50,597 | INFO     | monitor loop #2472: job 0:6905025599 is in state 'finished'
[2025-12-03 10:50:04] 2025-12-03 15:48:50,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:50:04] 2025-12-03 15:48:52,406 | INFO     | PID=2143134 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-03 10:50:04] 2025-12-03 15:48:52,407 | INFO     | .. there are 57 such processes running
[2025-12-03 10:50:04] 2025-12-03 15:48:53,102 | INFO     | monitor loop #2473: job 0:6905025599 is in state 'finished'
[2025-12-03 10:50:04] 2025-12-03 15:48:53,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:50:04] 2025-12-03 15:48:53,415 | INFO     | time since job start (45017s) is within the limit (172800.0s)
[2025-12-03 10:50:04] 2025-12-03 15:48:55,422 | INFO     | time since job start (45019s) is within the limit (172800.0s)
[2025-12-03 10:50:04] 2025-12-03 15:48:55,616 | INFO     | monitor loop #2474: job 0:6905025599 is in state 'finished'
[2025-12-03 10:50:04] 2025-12-03 15:48:55,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:50:04] 2025-12-03 15:48:57,439 | INFO     | time since job start (45021s) is within the limit (172800.0s)
[2025-12-03 10:50:04] 2025-12-03 15:48:58,132 | INFO     | monitor loop #2475: job 0:6905025599 is in state 'finished'
[2025-12-03 10:50:04] 2025-12-03 15:48:58,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 10:50:04] 2025-12-03 15:48:58,957 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 10:50:04] 2025-12-03 15:48:58,989 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3221.8507604166666
[2025-12-03 10:50:04] 2025-12-03 15:48:59,109 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6905025599/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,110 | INFO     | extracted standard info from prmon json
[2025-12-03 10:50:04] 2025-12-03 15:48:59,110 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 10:50:04] 2025-12-03 15:48:59,110 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 10:50:04] 2025-12-03 15:48:59,154 | INFO     | fitting pss+swap vs Time
[2025-12-03 10:50:04] 2025-12-03 15:48:59,155 | INFO     | sum of square deviations: 124122643025.15887
[2025-12-03 10:50:04] 2025-12-03 15:48:59,249 | INFO     | sum of deviations: 121331519006.60838
[2025-12-03 10:50:04] 2025-12-03 15:48:59,250 | INFO     | mean x: 1764754459.862958
[2025-12-03 10:50:04] 2025-12-03 15:48:59,250 | INFO     | mean y: 3414184.1248303936
[2025-12-03 10:50:04] 2025-12-03 15:48:59,250 | INFO     | intersect: -1721656552.932054
[2025-12-03 10:50:04] 2025-12-03 15:48:59,250 | INFO     | chi2: 13.672125776658902
[2025-12-03 10:50:04] 2025-12-03 15:48:59,251 | INFO     | sum of square deviations: 121613524836.40977
[2025-12-03 10:50:04] 2025-12-03 15:48:59,300 | INFO     | sum of deviations: 417197166915.31036
[2025-12-03 10:50:04] 2025-12-03 15:48:59,327 | INFO     | mean x: 1764754307.3688524
[2025-12-03 10:50:04] 2025-12-03 15:48:59,327 | INFO     | mean y: 3432161.180327869
[2025-12-03 10:50:04] 2025-12-03 15:48:59,327 | INFO     | intersect: -6050586076.727456
[2025-12-03 10:50:04] 2025-12-03 15:48:59,328 | INFO     | chi2: 10.346486410598544
[2025-12-03 10:50:04] 2025-12-03 15:48:59,328 | INFO     | current chi2=10.346486410598544 (change=24.32423033832749 %)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,328 | INFO     | right removable region: 731
[2025-12-03 10:50:04] 2025-12-03 15:48:59,329 | INFO     | sum of square deviations: 121613136876.40965
[2025-12-03 10:50:04] 2025-12-03 15:48:59,388 | INFO     | sum of deviations: -173636535226.95123
[2025-12-03 10:50:04] 2025-12-03 15:48:59,389 | INFO     | mean x: 1764754612.3688524
[2025-12-03 10:50:04] 2025-12-03 15:48:59,389 | INFO     | mean y: 3432092.6775956284
[2025-12-03 10:50:04] 2025-12-03 15:48:59,389 | INFO     | intersect: 2523109524.638887
[2025-12-03 10:50:04] 2025-12-03 15:48:59,390 | INFO     | chi2: 10.653296243013225
[2025-12-03 10:50:04] 2025-12-03 15:48:59,390 | INFO     | current chi2=10.653296243013225 (change=22.08017672569567 %)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,390 | INFO     | left removable region: 10
[2025-12-03 10:50:04] 2025-12-03 15:48:59,390 | INFO     | sum of square deviations: 116212251585.74207
[2025-12-03 10:50:04] 2025-12-03 15:48:59,460 | INFO     | time since job start (45023s) is within the limit (172800.0s)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,462 | INFO     | sum of deviations: 143515952174.75467
[2025-12-03 10:50:04] 2025-12-03 15:48:59,462 | INFO     | mean x: 1764754581.8807213
[2025-12-03 10:50:04] 2025-12-03 15:48:59,462 | INFO     | mean y: 3456016.392510402
[2025-12-03 10:50:04] 2025-12-03 15:48:59,462 | INFO     | intersect: -2175922067.393332
[2025-12-03 10:50:04] 2025-12-03 15:48:59,462 | INFO     | chi2: 6.659635478518868
[2025-12-03 10:50:04] 2025-12-03 15:48:59,463 | INFO     | current memory leak: 1.23 B/s (using 721 data points, chi2=6.66)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,463 | INFO     | could have reported an average CPU frequency of 3180 MHz (28 samples)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,464 | INFO     | ..............................
[2025-12-03 10:50:04] 2025-12-03 15:48:59,481 | INFO     | . Timing measurements:
[2025-12-03 10:50:04] 2025-12-03 15:48:59,481 | INFO     | . get job = 0 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,481 | INFO     | . initial setup = 4 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,481 | INFO     | . payload setup = 40 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,481 | INFO     | . stage-in = 0 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,482 | INFO     | . payload execution = 44916 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,482 | INFO     | . stage-out = 5 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,482 | INFO     | . log creation = 1 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,482 | INFO     | ..............................
[2025-12-03 10:50:04] 2025-12-03 15:48:59,834 | INFO     | 
[2025-12-03 10:50:04] 2025-12-03 15:48:59,834 | INFO     | job summary report
[2025-12-03 10:50:04] 2025-12-03 15:48:59,834 | INFO     | --------------------------------------------------
[2025-12-03 10:50:04] 2025-12-03 15:48:59,834 | INFO     | PanDA job id: 6905025599
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | task id: 47538113
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | errors: (none)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | pilot state: finished 
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | transexitcode: 0
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | exeerrorcode: 0
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | exeerrordiag: 
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | exitcode: 0
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | exitmsg: OK
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | cpuconsumptiontime: 163572 s
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | nevents: 1000
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | neventsw: 0
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | pid: 2174546
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | pgrp: 2174546
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | corecount: 8
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | event service: False
[2025-12-03 10:50:04] 2025-12-03 15:48:59,835 | INFO     | sizes: {0: 2284229, 1: 2284428, 12: 2284428, 18: 2284718, 23: 2284746, 44961: 2349734, 44962: 2349861, 44968: 2358967, 44983: 2359157}
[2025-12-03 10:50:04] 2025-12-03 15:48:59,836 | INFO     | --------------------------------------------------
[2025-12-03 10:50:04] 2025-12-03 15:48:59,836 | INFO     | 
[2025-12-03 10:50:04] 2025-12-03 15:48:59,836 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-03 10:50:04] 2025-12-03 15:48:59,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | job 6905025599 has completed (purged errors)
[2025-12-03 10:50:04] 2025-12-03 15:48:59,965 | INFO     | overall cleanup function is called
[2025-12-03 10:50:04] 2025-12-03 15:49:01,063 | INFO     | --- collectZombieJob: --- 10, [2174546]
[2025-12-03 10:50:04] 2025-12-03 15:49:01,063 | INFO     | zombie collector waiting for pid 2174546
[2025-12-03 10:50:04] 2025-12-03 15:49:01,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 10:50:04] 2025-12-03 15:49:01,063 | INFO     | collected zombie processes
[2025-12-03 10:50:04] 2025-12-03 15:49:01,063 | INFO     | will attempt to kill all subprocesses of pid=2174546
[2025-12-03 10:50:04] 2025-12-03 15:49:05,080 | INFO     | process IDs to be killed: [2174546] (in reverse order)
[2025-12-03 10:50:04] 2025-12-03 15:49:05,406 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 10:50:04] 2025-12-03 15:49:05,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 10:50:04] 2025-12-03 15:49:05,548 | INFO     | did not find any defunct processes belonging to 2174546
[2025-12-03 10:50:04] 2025-12-03 15:49:05,710 | INFO     | did not find any defunct processes belonging to 2174546
[2025-12-03 10:50:04] 2025-12-03 15:49:05,730 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 10:50:04] 2025-12-03 15:49:05,730 | INFO     | ready for new job
[2025-12-03 10:50:04] 2025-12-03 15:49:05,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 10:50:04] 2025-12-03 15:49:05,740 | INFO     | ***************************************
[2025-12-03 10:50:04] 2025-12-03 15:49:05,740 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 10:50:04] 2025-12-03 15:49:05,740 | INFO     | ***************************************
[2025-12-03 10:50:04] 2025-12-03 15:49:05,740 | INFO     | 
[2025-12-03 10:50:04] 2025-12-03 15:49:05,768 | INFO     | architecture information:
[2025-12-03 10:50:04] 2025-12-03 15:49:05,785 | INFO     | executing command: cat /etc/os-release
[2025-12-03 10:50:04] 2025-12-03 15:49:05,944 | INFO     | cat /etc/os-release:
[2025-12-03 10:50:04] NAME="CentOS Linux"
[2025-12-03 10:50:04] VERSION="7 (Core)"
[2025-12-03 10:50:04] ID="centos"
[2025-12-03 10:50:04] ID_LIKE="rhel fedora"
[2025-12-03 10:50:04] VERSION_ID="7"
[2025-12-03 10:50:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 10:50:04] ANSI_COLOR="0;31"
[2025-12-03 10:50:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 10:50:04] HOME_URL="https://www.centos.org/"
[2025-12-03 10:50:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 10:50:04] 
[2025-12-03 10:50:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 10:50:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 10:50:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 10:50:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 10:50:04] 
[2025-12-03 10:50:04] 2025-12-03 15:49:05,945 | INFO     | ***************************************
[2025-12-03 10:50:04] 2025-12-03 15:49:06,448 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-03 10:50:04] 2025-12-03 15:49:06,498 | INFO     | sufficient remaining disk space (122139181056 B)
[2025-12-03 10:50:04] 2025-12-03 15:49:06,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 10:50:04] 2025-12-03 15:49:06,499 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 10:50:04] 2025-12-03 15:49:06,499 | INFO     | update_server=False
[2025-12-03 10:50:04] 2025-12-03 15:49:06,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 10:50:04] 2025-12-03 15:49:06,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 10:50:04] 2025-12-03 15:49:06,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:50:04] 2025-12-03 15:49:06,773 | INFO     | aborting loop
[2025-12-03 10:50:04] 2025-12-03 15:49:06,926 | INFO     | all payload control threads have been joined
[2025-12-03 10:50:04] 2025-12-03 15:49:07,395 | INFO     | all data control threads have been joined
[2025-12-03 10:50:04] 2025-12-03 15:49:07,434 | INFO     | all job control threads have been joined
[2025-12-03 10:50:04] 2025-12-03 15:49:07,506 | INFO     | [job] retrieve thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:07,649 | INFO     | [payload] validate_post thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:07,813 | INFO     | [job] job monitor thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:07,932 | INFO     | [payload] control thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,055 | INFO     | [data] copytool_in thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,412 | INFO     | [data] control thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,424 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,438 | INFO     | [job] validate thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,439 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,446 | INFO     | [job] control thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,506 | INFO     | [data] copytool_out thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,698 | INFO     | [payload] failed_post thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,823 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:08,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:50:04] 2025-12-03 15:49:09,586 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 10:50:04] 2025-12-03 15:49:09,939 | INFO     | [job] queue monitor thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:13,620 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 10:50:04] 2025-12-03 15:49:33,344 | INFO     | PID=2143134 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 10:50:04] 2025-12-03 15:49:33,345 | INFO     | .. there are 57 such processes running
[2025-12-03 10:50:04] 2025-12-03 15:49:33,345 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 10:50:04] 2025-12-03 15:49:33,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 10:50:04] 2025-12-03 15:49:33,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 10:50:04] 2025-12-03 15:49:56,360 | INFO     | [monitor] cgroup control has ended
[2025-12-03 10:50:04] 2025-12-03 15:49:58,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784039319360)>', '<ExcThread(monitor, started 139783326131968)>']
[2025-12-03 10:50:04] 2025-12-03 15:49:58,504 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 10:50:04] 2025-12-03 15:49:58,504 | INFO     | [monitor] control thread has ended
[2025-12-03 10:50:04] 2025-12-03 15:50:03,061 | INFO     | all workflow threads have been joined
[2025-12-03 10:50:04] 2025-12-03 15:50:03,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 10:50:04] 2025-12-03 15:50:03,061 | INFO     | traces error code: 0
[2025-12-03 10:50:04] 2025-12-03 15:50:03,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 10:50:04] 2025-12-03 15:50:03,464 [wrapper] ==== pilot stdout END ====
[2025-12-03 10:50:04] 2025-12-03 15:50:03,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 10:50:04] 2025-12-03 15:50:03,500 [wrapper] pilotpid: 2143134
[2025-12-03 10:50:04] 2025-12-03 15:50:03,520 [wrapper] Pilot exit status: 0
[2025-12-03 10:50:04] 2025-12-03 15:50:03,563 [wrapper] pandaids: 6905025599
[2025-12-03 10:50:04] 2025-12-03 15:50:03,772 [wrapper] cleanup supervisor_pilot 2896828 2143135
[2025-12-03 10:50:04] 2025-12-03 15:50:03,806 [wrapper] Test setup, not cleaning
[2025-12-03 10:50:04] 2025-12-03 15:50:03,833 [wrapper] apfmon messages muted
[2025-12-03 10:50:04] 2025-12-03 15:50:03,861 [wrapper] ==== wrapper stdout END ====
[2025-12-03 10:50:04] 2025-12-03 15:50:03,889 [wrapper] ==== wrapper stderr END ====
[2025-12-03 10:50:04]  *** Error codes and diagnostics ***
[2025-12-03 10:50:04]     "exeErrorCode": 0,
[2025-12-03 10:50:04]     "exeErrorDiag": "",
[2025-12-03 10:50:04]     "pilotErrorCode": 0,
[2025-12-03 10:50:04]     "pilotErrorDiag": "",
[2025-12-03 10:50:04]  *** Listing of results directory ***
[2025-12-03 10:50:04] total 1069188
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-03 10:50:04] -rwx------. 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:23 queuedata.json
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas       100 Dec  2 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 10:50:04] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 22:17 run_atlas
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas       105 Dec  2 22:17 job.xml
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas 378421961 Dec  2 22:17 EVNT.47528871._000044.pool.root.1
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 22:17 start_atlas.sh
[2025-12-03 10:50:04] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 22:17 shared
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas    590141 Dec  2 22:17 input.tar.gz
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas         0 Dec  2 22:17 boinc_lockfile
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas      2879 Dec  2 22:17 pandaJob.out
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas        57 Dec  2 22:17 setup.sh.local
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas    989300 Dec  2 22:18 agis_schedconf.cvmfs.json
[2025-12-03 10:50:04] drwx------. 5 boincer umatlas      4096 Dec  2 22:18 pilot3
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas       532 Dec  3 10:30 boinc_task_state.xml
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas      6950 Dec  3 10:45 init_data.xml
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas 697680979 Dec  3 10:47 HITS.47538113._002029.pool.root.1
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas      1058 Dec  3 10:48 memory_monitor_summary.json
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas   1516240 Dec  3 10:48 agis_ddmendpoints.agis.ALL.json
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas        95 Dec  3 10:48 pilot_heartbeat.json
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas   2008743 Dec  3 10:48 log.47538113._002029.job.log.tgz.1
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas     28318 Dec  3 10:48 heartbeat.json
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 10:50 boinc_mmap_file
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas        29 Dec  3 10:50 wrapper_checkpoint.txt
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas      4825 Dec  3 10:50 pilotlog.txt
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas   5382468 Dec  3 10:50 log.47538113._002029.job.log.1
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas       353 Dec  3 10:50 output.list
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas       620 Dec  3 10:50 runtime_log
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas   7434240 Dec  3 10:50 result.tar.gz
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 10:50 runtime_log.err
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas       662 Dec  3 10:50 8PZMDmLKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbMPKDmVeRqsm.diag
[2025-12-03 10:50:04] -rw-r--r--. 1 boincer umatlas     21973 Dec  3 10:50 stderr.txt
[2025-12-03 10:50:04] HITS file was successfully produced:
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas 697680979 Dec  3 10:47 shared/HITS.pool.root.1
[2025-12-03 10:50:04]  *** Contents of shared directory: ***
[2025-12-03 10:50:04] total 1058752
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas 378421961 Dec  2 22:17 ATLAS.root_0
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 22:17 start_atlas.sh
[2025-12-03 10:50:04] -rw-r--r--. 2 boincer umatlas    590141 Dec  2 22:17 input.tar.gz
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas 697680979 Dec  3 10:47 HITS.pool.root.1
[2025-12-03 10:50:04] -rw-------. 1 boincer umatlas   7434240 Dec  3 10:50 result.tar.gz
10:50:05 (2136723): run_atlas exited; CPU time 164686.246230
10:50:05 (2136723): called boinc_finish(0)

</stderr_txt>
]]>

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