Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:52:35 (2376654): wrapper (7.7.26015): starting
21:52:35 (2376654): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 21:52:35] Arguments: --nthreads 8
[2025-12-02 21:52:35] Threads: 8
[2025-12-02 21:52:35] Checking for CVMFS
[2025-12-02 21:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:52:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:52:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:52:36] 2.13.3.0 12357 39507 319096 153577 3 716 21681649 32503809 51707 16776704 0 633192476 99.628 565870965 45207 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 21:52:36] CVMFS is ok
[2025-12-02 21:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:52:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 21:52:37] Further information can be found at the LHC@home message board.
[2025-12-02 21:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:52:37] Checking for apptainer binary...
[2025-12-02 21:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 21:52:37] Running /usr/bin/apptainer --version
[2025-12-02 21:52:37] apptainer version 1.4.4-1.el9
[2025-12-02 21:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:52:37] c8-7-2.aglt2.org
[2025-12-02 21:52:37] apptainer works
[2025-12-02 21:52:37] Set ATHENA_PROC_NUMBER=8
[2025-12-02 21:52:37] Set ATHENA_CORE_NUMBER=8
[2025-12-02 21:52:37] Starting ATLAS job with PandaID=6909088783
[2025-12-02 21:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 03:12:23]  *** The last 200 lines of the pilot log: ***
[2025-12-03 03:12:23] 2025-12-03 08:11:01,948 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6909088783/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,949 | INFO     | extracted standard info from prmon json
[2025-12-03 03:12:23] 2025-12-03 08:11:01,949 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 03:12:23] 2025-12-03 08:11:01,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 03:12:23] 2025-12-03 08:11:01,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 03:12:23] 2025-12-03 08:11:01,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 03:12:23] 2025-12-03 08:11:01,951 | INFO     | fitting pss+swap vs Time
[2025-12-03 03:12:23] 2025-12-03 08:11:01,952 | INFO     | sum of square deviations: 9059692108.555164
[2025-12-03 03:12:23] 2025-12-03 08:11:01,953 | INFO     | sum of deviations: 181452506932.63312
[2025-12-03 03:12:23] 2025-12-03 08:11:01,953 | INFO     | mean x: 1764740016.6201298
[2025-12-03 03:12:23] 2025-12-03 08:11:01,953 | INFO     | mean y: 2528773.672077922
[2025-12-03 03:12:23] 2025-12-03 08:11:01,953 | INFO     | intersect: -35342656941.59912
[2025-12-03 03:12:23] 2025-12-03 08:11:01,953 | INFO     | chi2: 7.001826146848415
[2025-12-03 03:12:23] 2025-12-03 08:11:01,954 | INFO     | sum of square deviations: 8625592928.481869
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | sum of deviations: 199187111559.34967
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | mean x: 1764739864.1221123
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | mean y: 2534906.828382838
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | intersect: -40749844564.66497
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | chi2: 6.284337188596478
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | current chi2=6.284337188596478 (change=10.247168998545973 %)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | right removable region: 302
[2025-12-03 03:12:23] 2025-12-03 08:11:01,955 | INFO     | sum of square deviations: 8625570358.481869
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | sum of deviations: 77778955652.33002
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | mean x: 1764740169.1221123
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | mean y: 2565159.234323432
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | intersect: -15910544542.208347
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | chi2: 2.836289874800884
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | current chi2=2.836289874800884 (change=59.49214083132407 %)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,957 | INFO     | sum of square deviations: 8205541895.906049
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | sum of deviations: 10644264998.604038
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | mean x: 1764740321.624161
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | mean y: 2589487.9161073826
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | intersect: -2286639410.721444
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | chi2: 1.1385299940121585
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | current chi2=1.1385299940121585 (change=59.85847553427216 %)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,959 | INFO     | sum of square deviations: 7799392091.576788
[2025-12-03 03:12:23] 2025-12-03 08:11:01,960 | INFO     | sum of deviations: -15280858373.860079
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | mean x: 1764740474.1228669
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | mean y: 2599212.023890785
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | intersect: 3460144227.719903
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | chi2: 0.8704512283680961
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | current chi2=0.8704512283680961 (change=23.546043323756262 %)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | left removable region: 30
[2025-12-03 03:12:23] 2025-12-03 08:11:01,961 | INFO     | sum of square deviations: 6239625873.235255
[2025-12-03 03:12:23] 2025-12-03 08:11:01,962 | INFO     | sum of deviations: -7197045480.117644
[2025-12-03 03:12:23] 2025-12-03 08:11:01,962 | INFO     | mean x: 1764740748.6323528
[2025-12-03 03:12:23] 2025-12-03 08:11:01,962 | INFO     | mean y: 2611678.3088235296
[2025-12-03 03:12:23] 2025-12-03 08:11:01,962 | INFO     | intersect: 2038137475.2967858
[2025-12-03 03:12:23] 2025-12-03 08:11:01,962 | INFO     | chi2: 0.04897267251550921
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | current memory leak: -1.15 B/s (using 272 data points, chi2=0.05)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | could have reported an average CPU frequency of 3779 MHz (14 samples)
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | ..............................
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . Timing measurements:
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . get job = 0 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . initial setup = 8 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . payload setup = 63 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . stage-in = 0 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . payload execution = 18796 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . stage-out = 4 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | . log creation = 1 s
[2025-12-03 03:12:23] 2025-12-03 08:11:01,963 | INFO     | ..............................
[2025-12-03 03:12:23] 2025-12-03 08:11:02,078 | INFO     | 
[2025-12-03 03:12:23] 2025-12-03 08:11:02,078 | INFO     | job summary report
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | --------------------------------------------------
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | PanDA job id: 6909088783
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | task id: 47523939
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | errors: (none)
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | pilot state: finished 
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | transexitcode: 0
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | exeerrorcode: 0
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | exeerrordiag: 
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | exitcode: 0
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | exitmsg: OK
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | cpuconsumptiontime: 64003 s
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | nevents: 400
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | neventsw: 0
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | pid: 2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | pgrp: 2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | corecount: 8
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | event service: False
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | sizes: {0: 2283025, 1: 2283710, 2: 2283909, 3: 2283909, 14: 2283937, 24: 2283965, 35: 2284121, 39: 2284411, 46: 2284439, 18863: 2316997, 18864: 2316996, 18869: 232
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | --------------------------------------------------
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | 
[2025-12-03 03:12:23] 2025-12-03 08:11:02,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | job 6909088783 has completed (purged errors)
[2025-12-03 03:12:23] 2025-12-03 08:11:02,393 | INFO     | overall cleanup function is called
[2025-12-03 03:12:23] 2025-12-03 08:11:03,402 | INFO     | --- collectZombieJob: --- 10, [2427164]
[2025-12-03 03:12:23] 2025-12-03 08:11:03,402 | INFO     | zombie collector waiting for pid 2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:03,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 03:12:23] 2025-12-03 08:11:03,402 | INFO     | collected zombie processes
[2025-12-03 03:12:23] 2025-12-03 08:11:03,402 | INFO     | will attempt to kill all subprocesses of pid=2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:05,296 | INFO     | process IDs to be killed: [2427164] (in reverse order)
[2025-12-03 03:12:23] 2025-12-03 08:11:05,586 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 03:12:23] 2025-12-03 08:11:05,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 03:12:23] 2025-12-03 08:11:05,697 | INFO     | did not find any defunct processes belonging to 2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:05,865 | INFO     | did not find any defunct processes belonging to 2427164
[2025-12-03 03:12:23] 2025-12-03 08:11:05,870 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 03:12:23] 2025-12-03 08:11:05,870 | INFO     | ready for new job
[2025-12-03 03:12:23] 2025-12-03 08:11:05,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 03:12:23] 2025-12-03 08:11:05,872 | INFO     | ***************************************
[2025-12-03 03:12:23] 2025-12-03 08:11:05,872 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 03:12:23] 2025-12-03 08:11:05,872 | INFO     | ***************************************
[2025-12-03 03:12:23] 2025-12-03 08:11:05,872 | INFO     | 
[2025-12-03 03:12:23] 2025-12-03 08:11:05,885 | INFO     | architecture information:
[2025-12-03 03:12:23] 2025-12-03 08:11:05,885 | INFO     | executing command: cat /etc/os-release
[2025-12-03 03:12:23] 2025-12-03 08:11:05,931 | INFO     | cat /etc/os-release:
[2025-12-03 03:12:23] NAME="CentOS Linux"
[2025-12-03 03:12:23] VERSION="7 (Core)"
[2025-12-03 03:12:23] ID="centos"
[2025-12-03 03:12:23] ID_LIKE="rhel fedora"
[2025-12-03 03:12:23] VERSION_ID="7"
[2025-12-03 03:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 03:12:23] ANSI_COLOR="0;31"
[2025-12-03 03:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 03:12:23] HOME_URL="https://www.centos.org/"
[2025-12-03 03:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 03:12:23] 
[2025-12-03 03:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 03:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 03:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 03:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 03:12:23] 
[2025-12-03 03:12:23] 2025-12-03 08:11:05,931 | INFO     | ***************************************
[2025-12-03 03:12:23] 2025-12-03 08:11:06,434 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 03:12:23] 2025-12-03 08:11:06,513 | INFO     | sufficient remaining disk space (91039465472 B)
[2025-12-03 03:12:23] 2025-12-03 08:11:06,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 03:12:23] 2025-12-03 08:11:06,513 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 03:12:23] 2025-12-03 08:11:06,514 | INFO     | update_server=False
[2025-12-03 03:12:23] 2025-12-03 08:11:06,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 03:12:23] 2025-12-03 08:11:06,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 03:12:23] 2025-12-03 08:11:07,022 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 03:12:23] 2025-12-03 08:11:07,022 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 03:12:23] 2025-12-03 08:11:07,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:12:23] 2025-12-03 08:11:07,022 | INFO     | will abort loop
[2025-12-03 03:12:23] 2025-12-03 08:11:07,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 03:12:23] 2025-12-03 08:11:07,516 | INFO     | all data control threads have been joined
[2025-12-03 03:12:23] 2025-12-03 08:11:07,518 | INFO     | [job] retrieve thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:07,596 | INFO     | [payload] failed_post thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:07,643 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:07,723 | INFO     | all payload control threads have been joined
[2025-12-03 03:12:23] 2025-12-03 08:11:07,948 | INFO     | [payload] validate_post thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,032 | INFO     | [job] job monitor thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,116 | INFO     | [job] queue monitor thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,242 | INFO     | all job control threads have been joined
[2025-12-03 03:12:23] 2025-12-03 08:11:08,332 | INFO     | [data] copytool_in thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,333 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,333 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,336 | INFO     | [job] validate thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 03:12:23] 2025-12-03 08:11:08,521 | INFO     | [data] copytool_out thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,522 | INFO     | [data] control thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:08,731 | INFO     | [payload] control thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:09,248 | INFO     | [job] control thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:12,485 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:17,075 | INFO     | job.realtimelogging is not enabled
[2025-12-03 03:12:23] 2025-12-03 08:11:18,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 03:12:23] 2025-12-03 08:11:35,225 | INFO     | PID=2394765 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 03:12:23] 2025-12-03 08:11:35,236 | INFO     | .. there are 41 such processes running
[2025-12-03 03:12:23] 2025-12-03 08:11:35,237 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 03:12:23] 2025-12-03 08:11:35,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 03:12:23] 2025-12-03 08:11:35,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 03:12:23] 2025-12-03 08:11:55,381 | INFO     | [monitor] cgroup control has ended
[2025-12-03 03:12:23] 2025-12-03 08:11:57,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140242042513216)>', '<ExcThread(monitor, started 140241411237632)>']
[2025-12-03 03:12:23] 2025-12-03 08:11:57,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 03:12:23] 2025-12-03 08:11:57,379 | INFO     | [monitor] control thread has ended
[2025-12-03 03:12:23] 2025-12-03 08:12:02,093 | INFO     | all workflow threads have been joined
[2025-12-03 03:12:23] 2025-12-03 08:12:02,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 03:12:23] 2025-12-03 08:12:02,121 | INFO     | traces error code: 0
[2025-12-03 03:12:23] 2025-12-03 08:12:02,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 03:12:23] 2025-12-03 08:12:02,404 [wrapper] ==== pilot stdout END ====
[2025-12-03 03:12:23] 2025-12-03 08:12:02,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 03:12:23] 2025-12-03 08:12:02,529 [wrapper] pilotpid: 2394765
[2025-12-03 03:12:23] 2025-12-03 08:12:02,573 [wrapper] Pilot exit status: 0
[2025-12-03 03:12:23] 2025-12-03 08:12:02,887 [wrapper] pandaids: 6909088783
[2025-12-03 03:12:23] 2025-12-03 08:12:03,961 [wrapper] cleanup supervisor_pilot 3914926 2394766
[2025-12-03 03:12:23] 2025-12-03 08:12:03,997 [wrapper] Test setup, not cleaning
[2025-12-03 03:12:23] 2025-12-03 08:12:04,024 [wrapper] apfmon messages muted
[2025-12-03 03:12:23] 2025-12-03 08:12:04,063 [wrapper] ==== wrapper stdout END ====
[2025-12-03 03:12:23] 2025-12-03 08:12:04,114 [wrapper] ==== wrapper stderr END ====
[2025-12-03 03:12:23]  *** Error codes and diagnostics ***
[2025-12-03 03:12:23]     "exeErrorCode": 0,
[2025-12-03 03:12:23]     "exeErrorDiag": "",
[2025-12-03 03:12:23]     "pilotErrorCode": 0,
[2025-12-03 03:12:23]     "pilotErrorDiag": "",
[2025-12-03 03:12:23]  *** Listing of results directory ***
[2025-12-03 03:12:23] total 620592
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 30 06:05 pilot3.tar.gz
[2025-12-03 03:12:23] -rwx------. 1 boincer umatlas     36292 Nov 30 06:08 runpilot2-wrapper.sh
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 30 06:09 queuedata.json
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas       100 Dec  2 21:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 03:12:23] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 21:52 run_atlas
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas       105 Dec  2 21:52 job.xml
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas 293470049 Dec  2 21:52 EVNT.47523935._000005.pool.root.1
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:52 start_atlas.sh
[2025-12-03 03:12:23] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 21:52 shared
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas    589959 Dec  2 21:52 input.tar.gz
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas         0 Dec  2 21:52 boinc_lockfile
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas      2614 Dec  2 21:52 pandaJob.out
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas        57 Dec  2 21:52 setup.sh.local
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas    989292 Dec  2 21:54 agis_schedconf.cvmfs.json
[2025-12-03 03:12:23] drwx------. 5 boincer umatlas      4096 Dec  2 21:54 pilot3
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas      7171 Dec  3 03:02 init_data.xml
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas 332410138 Dec  3 03:09 HITS.47523939._000136.pool.root.1
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas       530 Dec  3 03:09 boinc_task_state.xml
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas      1049 Dec  3 03:10 memory_monitor_summary.json
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas   1516240 Dec  3 03:10 agis_ddmendpoints.agis.ALL.json
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas    520863 Dec  3 03:10 log.47523939._000136.job.log.tgz.1
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas      7791 Dec  3 03:11 heartbeat.json
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas        95 Dec  3 03:11 pilot_heartbeat.json
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas      5082 Dec  3 03:12 pilotlog.txt
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas   2329367 Dec  3 03:12 log.47523939._000136.job.log.1
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas       357 Dec  3 03:12 output.list
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas       620 Dec  3 03:12 runtime_log
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas   2867200 Dec  3 03:12 result.tar.gz
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas       659 Dec  3 03:12 AWeLDmTTuj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsOMKDmes1o2m.diag
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 03:12 runtime_log.err
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas        28 Dec  3 03:12 wrapper_checkpoint.txt
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 03:12 boinc_mmap_file
[2025-12-03 03:12:23] -rw-r--r--. 1 boincer umatlas     21296 Dec  3 03:12 stderr.txt
[2025-12-03 03:12:23] HITS file was successfully produced:
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas 332410138 Dec  3 03:09 shared/HITS.pool.root.1
[2025-12-03 03:12:23]  *** Contents of shared directory: ***
[2025-12-03 03:12:23] total 614612
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas 293470049 Dec  2 21:52 ATLAS.root_0
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:52 start_atlas.sh
[2025-12-03 03:12:23] -rw-r--r--. 2 boincer umatlas    589959 Dec  2 21:52 input.tar.gz
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas 332410138 Dec  3 03:09 HITS.pool.root.1
[2025-12-03 03:12:23] -rw-------. 1 boincer umatlas   2867200 Dec  3 03:12 result.tar.gz
03:12:25 (2376654): run_atlas exited; CPU time 64816.286053
03:12:25 (2376654): called boinc_finish(0)

</stderr_txt>
]]>

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