Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:31:31 (3781715): wrapper (7.7.26015): starting
21:31:31 (3781715): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 21:31:31] Arguments: --nthreads 8
[2025-12-02 21:31:31] Threads: 8
[2025-12-02 21:31:31] Checking for CVMFS
[2025-12-02 21:31:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:31:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:31:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:31:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:31:33] 2.13.2.0 7528 42393 167236 153577 2 508 37725154 40960000 19527 16776704 0 108373556 99.784 68849305 43194 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 21:31:33] CVMFS is ok
[2025-12-02 21:31:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:31:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 21:31:33] Further information can be found at the LHC@home message board.
[2025-12-02 21:31:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:31:33] Checking for apptainer binary...
[2025-12-02 21:31:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 21:31:33] Running /usr/bin/apptainer --version
[2025-12-02 21:31:33] apptainer version 1.4.4-1.el9
[2025-12-02 21:31:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:31:33] c-212-9.aglt2.org
[2025-12-02 21:31:33] apptainer works
[2025-12-02 21:31:33] Set ATHENA_PROC_NUMBER=8
[2025-12-02 21:31:33] Set ATHENA_CORE_NUMBER=8
[2025-12-02 21:31:33] Starting ATLAS job with PandaID=6908987586
[2025-12-02 21:31:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 00:44:37]  *** The last 200 lines of the pilot log: ***
[2025-12-03 00:44:37] 2025-12-03 05:43:57,504 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3133.2184687499994
[2025-12-03 00:44:37] 2025-12-03 05:43:57,520 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6908987586/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,521 | INFO     | extracted standard info from prmon json
[2025-12-03 00:44:37] 2025-12-03 05:43:57,521 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 00:44:37] 2025-12-03 05:43:57,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 00:44:37] 2025-12-03 05:43:57,522 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 00:44:37] 2025-12-03 05:43:57,522 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 00:44:37] 2025-12-03 05:43:57,526 | INFO     | fitting pss+swap vs Time
[2025-12-03 00:44:37] 2025-12-03 05:43:57,527 | INFO     | sum of square deviations: 2060337160.9787238
[2025-12-03 00:44:37] 2025-12-03 05:43:57,528 | INFO     | sum of deviations: 4095512982.9574356
[2025-12-03 00:44:37] 2025-12-03 05:43:57,528 | INFO     | mean x: 1764734910.5106382
[2025-12-03 00:44:37] 2025-12-03 05:43:57,528 | INFO     | mean y: 2550043.7712765955
[2025-12-03 00:44:37] 2025-12-03 05:43:57,529 | INFO     | intersect: -3505368404.897224
[2025-12-03 00:44:37] 2025-12-03 05:43:57,529 | INFO     | chi2: 2.680407436047689
[2025-12-03 00:44:37] 2025-12-03 05:43:57,529 | INFO     | sum of square deviations: 1900278955.9781432
[2025-12-03 00:44:37] 2025-12-03 05:43:57,530 | INFO     | sum of deviations: 15346012312.016373
[2025-12-03 00:44:37] 2025-12-03 05:43:57,530 | INFO     | mean x: 1764734758.0109289
[2025-12-03 00:44:37] 2025-12-03 05:43:57,530 | INFO     | mean y: 2560513.4918032787
[2025-12-03 00:44:37] 2025-12-03 05:43:57,530 | INFO     | intersect: -14248842544.29717
[2025-12-03 00:44:37] 2025-12-03 05:43:57,531 | INFO     | chi2: 2.009232806459826
[2025-12-03 00:44:37] 2025-12-03 05:43:57,531 | INFO     | current chi2=2.009232806459826 (change=25.040022668252348 %)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,531 | INFO     | sum of square deviations: 1748732538.4775317
[2025-12-03 00:44:37] 2025-12-03 05:43:57,532 | INFO     | sum of deviations: 14230778610.713484
[2025-12-03 00:44:37] 2025-12-03 05:43:57,532 | INFO     | mean x: 1764734605.511236
[2025-12-03 00:44:37] 2025-12-03 05:43:57,537 | INFO     | mean y: 2559390.893258427
[2025-12-03 00:44:37] 2025-12-03 05:43:57,537 | INFO     | intersect: -14358440318.964808
[2025-12-03 00:44:37] 2025-12-03 05:43:57,537 | INFO     | chi2: 2.009554055800644
[2025-12-03 00:44:37] 2025-12-03 05:43:57,537 | INFO     | current chi2=2.009554055800644 (change=-0.01598865695331029 %)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,538 | INFO     | right removable region: 177
[2025-12-03 00:44:37] 2025-12-03 05:43:57,538 | INFO     | sum of square deviations: 1900277735.9781432
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | sum of deviations: -31370431481.99453
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | mean x: 1764735063.0109289
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | mean y: 2583476.4972677594
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | intersect: 29135430391.40444
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | chi2: 0.7933887741298915
[2025-12-03 00:44:37] 2025-12-03 05:43:57,539 | INFO     | current chi2=0.7933887741298915 (change=70.40044123665923 %)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,540 | INFO     | sum of square deviations: 1748730098.4775317
[2025-12-03 00:44:37] 2025-12-03 05:43:57,543 | INFO     | sum of deviations: -28635292127.151695
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | mean x: 1764735215.511236
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | mean y: 2580713.8258426967
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | intersect: 28899955138.4049
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | chi2: 0.7926749538809058
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | current chi2=0.7926749538809058 (change=0.0899710548297766 %)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,544 | INFO     | left removable region: 20
[2025-12-03 00:44:37] 2025-12-03 05:43:57,545 | INFO     | sum of square deviations: 1199932953.9745193
[2025-12-03 00:44:37] 2025-12-03 05:43:57,545 | INFO     | sum of deviations: -10196711050.808907
[2025-12-03 00:44:37] 2025-12-03 05:43:57,545 | INFO     | mean x: 1764735185.012739
[2025-12-03 00:44:37] 2025-12-03 05:43:57,546 | INFO     | mean y: 2583384.9044585987
[2025-12-03 00:44:37] 2025-12-03 05:43:57,546 | INFO     | intersect: 14998833553.022444
[2025-12-03 00:44:37] 2025-12-03 05:43:57,547 | INFO     | chi2: 0.07478899375292528
[2025-12-03 00:44:37] 2025-12-03 05:43:57,547 | INFO     | current memory leak: -8.50 B/s (using 157 data points, chi2=0.07)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | could have reported an average CPU frequency of 3022 MHz (10 samples)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | ..............................
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . Timing measurements:
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . get job = 0 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . initial setup = 4 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . payload setup = 25 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . stage-in = 0 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . payload execution = 11438 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . stage-out = 2 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | . log creation = 0 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,549 | INFO     | ..............................
[2025-12-03 00:44:37] 2025-12-03 05:43:57,655 | INFO     | 
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | job summary report
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | --------------------------------------------------
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | PanDA job id: 6908987586
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | task id: 46965017
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | errors: (none)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | pilot state: finished 
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | transexitcode: 0
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | exeerrorcode: 0
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | exeerrordiag: 
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | exitcode: 0
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | exitmsg: OK
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | cpuconsumptiontime: 33994 s
[2025-12-03 00:44:37] 2025-12-03 05:43:57,657 | INFO     | nevents: 400
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | neventsw: 0
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | pid: 3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | pgrp: 3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | corecount: 8
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | event service: False
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | sizes: {0: 2283753, 1: 2283837, 2: 2284036, 13: 2284036, 19: 2284354, 23: 2284382, 11464: 2314226, 11465: 2314225, 11467: 2323279, 11468: 2323335, 11473: 2323529}
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | --------------------------------------------------
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | 
[2025-12-03 00:44:37] 2025-12-03 05:43:57,658 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 00:44:37] 2025-12-03 05:43:57,711 | INFO     | time since job start (11507s) is within the limit (172800.0s)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,712 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,712 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,712 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | job 6908987586 has completed (purged errors)
[2025-12-03 00:44:37] 2025-12-03 05:43:57,714 | INFO     | overall cleanup function is called
[2025-12-03 00:44:37] 2025-12-03 05:43:58,723 | INFO     | --- collectZombieJob: --- 10, [3792264]
[2025-12-03 00:44:37] 2025-12-03 05:43:58,724 | INFO     | zombie collector waiting for pid 3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:58,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 00:44:37] 2025-12-03 05:43:58,724 | INFO     | collected zombie processes
[2025-12-03 00:44:37] 2025-12-03 05:43:58,724 | INFO     | will attempt to kill all subprocesses of pid=3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:59,155 | INFO     | process IDs to be killed: [3792264] (in reverse order)
[2025-12-03 00:44:37] 2025-12-03 05:43:59,286 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 00:44:37] 2025-12-03 05:43:59,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 00:44:37] 2025-12-03 05:43:59,364 | INFO     | did not find any defunct processes belonging to 3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:59,379 | INFO     | did not find any defunct processes belonging to 3792264
[2025-12-03 00:44:37] 2025-12-03 05:43:59,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 00:44:37] 2025-12-03 05:43:59,381 | INFO     | ready for new job
[2025-12-03 00:44:37] 2025-12-03 05:43:59,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 00:44:37] 2025-12-03 05:43:59,384 | INFO     | ***************************************
[2025-12-03 00:44:37] 2025-12-03 05:43:59,384 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 00:44:37] 2025-12-03 05:43:59,385 | INFO     | ***************************************
[2025-12-03 00:44:37] 2025-12-03 05:43:59,385 | INFO     | 
[2025-12-03 00:44:37] 2025-12-03 05:43:59,401 | INFO     | architecture information:
[2025-12-03 00:44:37] 2025-12-03 05:43:59,425 | INFO     | executing command: cat /etc/os-release
[2025-12-03 00:44:37] 2025-12-03 05:43:59,463 | INFO     | cat /etc/os-release:
[2025-12-03 00:44:37] NAME="CentOS Linux"
[2025-12-03 00:44:37] VERSION="7 (Core)"
[2025-12-03 00:44:37] ID="centos"
[2025-12-03 00:44:37] ID_LIKE="rhel fedora"
[2025-12-03 00:44:37] VERSION_ID="7"
[2025-12-03 00:44:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 00:44:37] ANSI_COLOR="0;31"
[2025-12-03 00:44:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 00:44:37] HOME_URL="https://www.centos.org/"
[2025-12-03 00:44:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 00:44:37] 
[2025-12-03 00:44:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 00:44:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 00:44:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 00:44:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 00:44:37] 
[2025-12-03 00:44:37] 2025-12-03 05:43:59,464 | INFO     | ***************************************
[2025-12-03 00:44:37] 2025-12-03 05:43:59,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 00:44:37] 2025-12-03 05:43:59,987 | INFO     | sufficient remaining disk space (125799759872 B)
[2025-12-03 00:44:37] 2025-12-03 05:43:59,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 00:44:37] 2025-12-03 05:43:59,987 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 00:44:37] 2025-12-03 05:43:59,988 | INFO     | update_server=False
[2025-12-03 00:44:37] 2025-12-03 05:43:59,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 00:44:37] 2025-12-03 05:44:00,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 00:44:37] 2025-12-03 05:44:00,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:44:37] 2025-12-03 05:44:00,652 | INFO     | aborting loop
[2025-12-03 00:44:37] 2025-12-03 05:44:00,897 | INFO     | all payload control threads have been joined
[2025-12-03 00:44:37] 2025-12-03 05:44:00,989 | INFO     | [job] retrieve thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:01,042 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:01,067 | INFO     | all data control threads have been joined
[2025-12-03 00:44:37] 2025-12-03 05:44:01,218 | INFO     | [job] validate thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:01,559 | INFO     | [data] copytool_in thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:01,652 | INFO     | [job] job monitor thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:01,673 | INFO     | all job control threads have been joined
[2025-12-03 00:44:37] 2025-12-03 05:44:01,903 | INFO     | [payload] control thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,032 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,073 | INFO     | [data] control thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,135 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,162 | INFO     | [payload] failed_post thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,163 | INFO     | [payload] validate_post thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,214 | INFO     | [data] copytool_out thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:02,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 00:44:37] 2025-12-03 05:44:02,679 | INFO     | [job] control thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:03,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 00:44:37] 2025-12-03 05:44:03,673 | INFO     | [job] queue monitor thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:07,434 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:10,349 | INFO     | job.realtimelogging is not enabled
[2025-12-03 00:44:37] 2025-12-03 05:44:11,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 00:44:37] 2025-12-03 05:44:29,970 | INFO     | [monitor] cgroup control has ended
[2025-12-03 00:44:37] 2025-12-03 05:44:31,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965993490240)>', '<ExcThread(monitor, started 139965644130048)>']
[2025-12-03 00:44:37] 2025-12-03 05:44:32,977 | INFO     | PID=3785664 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 00:44:37] 2025-12-03 05:44:32,977 | INFO     | .. there are 17 such processes running
[2025-12-03 00:44:37] 2025-12-03 05:44:32,978 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 00:44:37] 2025-12-03 05:44:32,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 00:44:37] 2025-12-03 05:44:32,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 00:44:37] 2025-12-03 05:44:32,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 00:44:37] 2025-12-03 05:44:32,998 | INFO     | [monitor] control thread has ended
[2025-12-03 00:44:37] 2025-12-03 05:44:36,958 | INFO     | all workflow threads have been joined
[2025-12-03 00:44:37] 2025-12-03 05:44:36,958 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 00:44:37] 2025-12-03 05:44:36,959 | INFO     | traces error code: 0
[2025-12-03 00:44:37] 2025-12-03 05:44:36,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 00:44:37] 2025-12-03 05:44:37,226 [wrapper] ==== pilot stdout END ====
[2025-12-03 00:44:37] 2025-12-03 05:44:37,230 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 00:44:37] 2025-12-03 05:44:37,235 [wrapper] pilotpid: 3785664
[2025-12-03 00:44:37] 2025-12-03 05:44:37,239 [wrapper] Pilot exit status: 0
[2025-12-03 00:44:37] 2025-12-03 05:44:37,252 [wrapper] pandaids: 6908987586
[2025-12-03 00:44:37] 2025-12-03 05:44:37,334 [wrapper] cleanup supervisor_pilot 4166695 3785665
[2025-12-03 00:44:37] 2025-12-03 05:44:37,337 [wrapper] Test setup, not cleaning
[2025-12-03 00:44:37] 2025-12-03 05:44:37,339 [wrapper] apfmon messages muted
[2025-12-03 00:44:37] 2025-12-03 05:44:37,342 [wrapper] ==== wrapper stdout END ====
[2025-12-03 00:44:37] 2025-12-03 05:44:37,344 [wrapper] ==== wrapper stderr END ====
[2025-12-03 00:44:37]  *** Error codes and diagnostics ***
[2025-12-03 00:44:37]     "exeErrorCode": 0,
[2025-12-03 00:44:37]     "exeErrorDiag": "",
[2025-12-03 00:44:37]     "pilotErrorCode": 0,
[2025-12-03 00:44:37]     "pilotErrorDiag": "",
[2025-12-03 00:44:37]  *** Listing of results directory ***
[2025-12-03 00:44:37] total 464460
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 30 06:05 pilot3.tar.gz
[2025-12-03 00:44:37] -rwx------. 1 boincer umatlas     36292 Nov 30 06:08 runpilot2-wrapper.sh
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 30 06:09 queuedata.json
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas       100 Dec  2 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 00:44:37] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 21:31 run_atlas
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas       105 Dec  2 21:31 job.xml
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas 272365296 Dec  2 21:31 EVNT.46965009._000067.pool.root.1
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:31 start_atlas.sh
[2025-12-03 00:44:37] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 21:31 shared
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas    589973 Dec  2 21:31 input.tar.gz
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas         0 Dec  2 21:31 boinc_lockfile
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas      2652 Dec  2 21:31 pandaJob.out
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas        57 Dec  2 21:31 setup.sh.local
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas    989292 Dec  2 21:32 agis_schedconf.cvmfs.json
[2025-12-03 00:44:37] drwx------. 5 boincer umatlas      4096 Dec  2 21:32 pilot3
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas      6948 Dec  3 00:39 init_data.xml
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas 195363171 Dec  3 00:43 HITS.46965017._001729.pool.root.1
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas       531 Dec  3 00:43 boinc_task_state.xml
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas        95 Dec  3 00:43 pilot_heartbeat.json
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas      1036 Dec  3 00:43 memory_monitor_summary.json
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas   1516240 Dec  3 00:43 agis_ddmendpoints.agis.ALL.json
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas    416194 Dec  3 00:43 log.46965017._001729.job.log.tgz.1
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas      7775 Dec  3 00:43 heartbeat.json
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas        28 Dec  3 00:44 wrapper_checkpoint.txt
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 00:44 boinc_mmap_file
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas      4897 Dec  3 00:44 pilotlog.txt
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas   1565642 Dec  3 00:44 log.46965017._001729.job.log.1
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas       357 Dec  3 00:44 output.list
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas       620 Dec  3 00:44 runtime_log
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas   1996800 Dec  3 00:44 result.tar.gz
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 00:44 runtime_log.err
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas       654 Dec  3 00:44 AoFKDmTTuj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAfPKDmyGD8Un.diag
[2025-12-03 00:44:37] -rw-r--r--. 1 boincer umatlas     21335 Dec  3 00:44 stderr.txt
[2025-12-03 00:44:37] HITS file was successfully produced:
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas 195363171 Dec  3 00:43 shared/HITS.pool.root.1
[2025-12-03 00:44:37]  *** Contents of shared directory: ***
[2025-12-03 00:44:37] total 459328
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas 272365296 Dec  2 21:31 ATLAS.root_0
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:31 start_atlas.sh
[2025-12-03 00:44:37] -rw-r--r--. 2 boincer umatlas    589973 Dec  2 21:31 input.tar.gz
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas 195363171 Dec  3 00:43 HITS.pool.root.1
[2025-12-03 00:44:37] -rw-------. 1 boincer umatlas   1996800 Dec  3 00:44 result.tar.gz
00:44:39 (3781715): run_atlas exited; CPU time 34334.060877
00:44:39 (3781715): called boinc_finish(0)

</stderr_txt>
]]>

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