Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:03:37 (3377883): wrapper (7.7.26015): starting
21:03:37 (3377883): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 21:03:37] Arguments: --nthreads 8
[2025-12-02 21:03:37] Threads: 8
[2025-12-02 21:03:37] Checking for CVMFS
[2025-12-02 21:03:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 21:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 21:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 21:03:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 21:03:39] 2.13.3.0 7314 39444 264928 153576 3 761 31801192 40960000 54346 16776704 0 595314230 99.748 380147696 48393 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 21:03:39] CVMFS is ok
[2025-12-02 21:03:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 21:03:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 21:03:39] Further information can be found at the LHC@home message board.
[2025-12-02 21:03:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 21:03:39] Checking for apptainer binary...
[2025-12-02 21:03:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 21:03:39] Running /usr/bin/apptainer --version
[2025-12-02 21:03:39] apptainer version 1.4.4-1.el9
[2025-12-02 21:03:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 21:03:40] c8-16-1.aglt2.org
[2025-12-02 21:03:40] apptainer works
[2025-12-02 21:03:40] Set ATHENA_PROC_NUMBER=8
[2025-12-02 21:03:40] Set ATHENA_CORE_NUMBER=8
[2025-12-02 21:03:40] Starting ATLAS job with PandaID=6904974451
[2025-12-02 21:03:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 06:37:49]  *** The last 200 lines of the pilot log: ***
[2025-12-03 06:37:49] 2025-12-03 11:36:52,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:37:49] 2025-12-03 11:36:54,843 | INFO     | time since job start (34301s) is within the limit (172800.0s)
[2025-12-03 06:37:49] 2025-12-03 11:36:55,350 | INFO     | monitor loop #1967: job 0:6904974451 is in state 'finished'
[2025-12-03 06:37:49] 2025-12-03 11:36:55,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:37:49] 2025-12-03 11:36:56,850 | INFO     | time since job start (34303s) is within the limit (172800.0s)
[2025-12-03 06:37:49] 2025-12-03 11:36:57,860 | INFO     | monitor loop #1968: job 0:6904974451 is in state 'finished'
[2025-12-03 06:37:49] 2025-12-03 11:36:57,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:37:49] 2025-12-03 11:36:58,857 | INFO     | time since job start (34305s) is within the limit (172800.0s)
[2025-12-03 06:37:49] 2025-12-03 11:37:00,365 | INFO     | monitor loop #1969: job 0:6904974451 is in state 'finished'
[2025-12-03 06:37:49] 2025-12-03 11:37:00,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:37:49] 2025-12-03 11:37:00,863 | INFO     | time since job start (34307s) is within the limit (172800.0s)
[2025-12-03 06:37:49] 2025-12-03 11:37:02,878 | INFO     | monitor loop #1970: job 0:6904974451 is in state 'finished'
[2025-12-03 06:37:49] 2025-12-03 11:37:02,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 06:37:49] 2025-12-03 11:37:02,878 | INFO     | time since job start (34309s) is within the limit (172800.0s)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,084 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 06:37:49] 2025-12-03 11:37:03,093 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3796.8116874999987
[2025-12-03 06:37:49] 2025-12-03 11:37:03,118 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6904974451/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,118 | INFO     | extracted standard info from prmon json
[2025-12-03 06:37:49] 2025-12-03 11:37:03,118 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 06:37:49] 2025-12-03 11:37:03,118 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 06:37:49] 2025-12-03 11:37:03,131 | INFO     | fitting pss+swap vs Time
[2025-12-03 06:37:49] 2025-12-03 11:37:03,132 | INFO     | sum of square deviations: 54165741910.43646
[2025-12-03 06:37:49] 2025-12-03 11:37:03,140 | INFO     | sum of deviations: 405311196954.2207
[2025-12-03 06:37:49] 2025-12-03 11:37:03,140 | INFO     | mean x: 1764744748.4025044
[2025-12-03 06:37:49] 2025-12-03 11:37:03,140 | INFO     | mean y: 3183617.270125224
[2025-12-03 06:37:49] 2025-12-03 11:37:03,140 | INFO     | intersect: -13202041328.718815
[2025-12-03 06:37:49] 2025-12-03 11:37:03,141 | INFO     | chi2: 39.48082646054918
[2025-12-03 06:37:49] 2025-12-03 11:37:03,141 | INFO     | sum of square deviations: 52725516803.01277
[2025-12-03 06:37:49] 2025-12-03 11:37:03,149 | INFO     | sum of deviations: 612502957447.4547
[2025-12-03 06:37:49] 2025-12-03 11:37:03,149 | INFO     | mean x: 1764744595.9151626
[2025-12-03 06:37:49] 2025-12-03 11:37:03,149 | INFO     | mean y: 3205545.9458483756
[2025-12-03 06:37:49] 2025-12-03 11:37:03,149 | INFO     | intersect: -20497518765.127888
[2025-12-03 06:37:49] 2025-12-03 11:37:03,150 | INFO     | chi2: 35.86770523072172
[2025-12-03 06:37:49] 2025-12-03 11:37:03,153 | INFO     | current chi2=35.86770523072172 (change=9.151584588630227 %)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,153 | INFO     | right removable region: 553
[2025-12-03 06:37:49] 2025-12-03 11:37:03,153 | INFO     | sum of square deviations: 52725038563.01285
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | sum of deviations: 140359301748.7279
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | mean x: 1764744900.9151626
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | mean y: 3211661.972924188
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | intersect: -4694714955.208219
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | chi2: 34.29609125464835
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | current chi2=34.29609125464835 (change=13.132286405102544 %)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,160 | INFO     | left removable region: 10
[2025-12-03 06:37:49] 2025-12-03 11:37:03,161 | INFO     | sum of square deviations: 49646440734.03743
[2025-12-03 06:37:49] 2025-12-03 11:37:03,168 | INFO     | sum of deviations: 142039030698.67258
[2025-12-03 06:37:49] 2025-12-03 11:37:03,169 | INFO     | mean x: 1764744870.4438305
[2025-12-03 06:37:49] 2025-12-03 11:37:03,169 | INFO     | mean y: 3266335.349907919
[2025-12-03 06:37:49] 2025-12-03 11:37:03,169 | INFO     | intersect: -5045688778.494593
[2025-12-03 06:37:49] 2025-12-03 11:37:03,169 | INFO     | chi2: 25.369745577405514
[2025-12-03 06:37:49] 2025-12-03 11:37:03,169 | INFO     | current memory leak: 2.86 B/s (using 543 data points, chi2=25.37)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | could have reported an average CPU frequency of 3787 MHz (22 samples)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | ..............................
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . Timing measurements:
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . get job = 0 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . initial setup = 4 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . payload setup = 98 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . stage-in = 0 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . payload execution = 34087 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . stage-out = 7 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | . log creation = 1 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,170 | INFO     | ..............................
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | 
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | job summary report
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | --------------------------------------------------
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | PanDA job id: 6904974451
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | task id: 47538113
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | errors: (none)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | pilot state: finished 
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | transexitcode: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:03,361 | INFO     | exeerrorcode: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | exeerrordiag: 
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | exitcode: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | exitmsg: OK
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | cpuconsumptiontime: 123600 s
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | nevents: 1000
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | neventsw: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | pid: 3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | pgrp: 3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | corecount: 8
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | event service: False
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | sizes: {0: 2284229, 1: 2284428, 12: 2284428, 23: 2284456, 34: 2284484, 36: 2284774, 44: 2284930, 34186: 2345333, 34187: 2345332, 34194: 2354382, 34196: 2354438, 34
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | --------------------------------------------------
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | 
[2025-12-03 06:37:49] 2025-12-03 11:37:03,362 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-03 06:37:49] 2025-12-03 11:37:03,568 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,582 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 06:37:49] 2025-12-03 11:37:03,582 | INFO     | job 6904974451 has completed (purged errors)
[2025-12-03 06:37:49] 2025-12-03 11:37:03,582 | INFO     | overall cleanup function is called
[2025-12-03 06:37:49] 2025-12-03 11:37:04,636 | INFO     | --- collectZombieJob: --- 10, [3419961]
[2025-12-03 06:37:49] 2025-12-03 11:37:04,636 | INFO     | zombie collector waiting for pid 3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:04,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 06:37:49] 2025-12-03 11:37:04,636 | INFO     | collected zombie processes
[2025-12-03 06:37:49] 2025-12-03 11:37:04,636 | INFO     | will attempt to kill all subprocesses of pid=3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:09,997 | INFO     | process IDs to be killed: [3419961] (in reverse order)
[2025-12-03 06:37:49] 2025-12-03 11:37:10,116 | INFO     | PID=3398156 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:37:49] 2025-12-03 11:37:10,116 | INFO     | .. there are 40 such processes running
[2025-12-03 06:37:49] 2025-12-03 11:37:10,632 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 06:37:49] 2025-12-03 11:37:10,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 06:37:49] 2025-12-03 11:37:10,678 | INFO     | did not find any defunct processes belonging to 3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:10,712 | INFO     | did not find any defunct processes belonging to 3419961
[2025-12-03 06:37:49] 2025-12-03 11:37:10,728 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 06:37:49] 2025-12-03 11:37:10,728 | INFO     | ready for new job
[2025-12-03 06:37:49] 2025-12-03 11:37:10,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 06:37:49] 2025-12-03 11:37:10,730 | INFO     | ***************************************
[2025-12-03 06:37:49] 2025-12-03 11:37:10,730 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 06:37:49] 2025-12-03 11:37:10,730 | INFO     | ***************************************
[2025-12-03 06:37:49] 2025-12-03 11:37:10,730 | INFO     | 
[2025-12-03 06:37:49] 2025-12-03 11:37:10,739 | INFO     | architecture information:
[2025-12-03 06:37:49] 2025-12-03 11:37:10,743 | INFO     | executing command: cat /etc/os-release
[2025-12-03 06:37:49] 2025-12-03 11:37:10,786 | INFO     | cat /etc/os-release:
[2025-12-03 06:37:49] NAME="CentOS Linux"
[2025-12-03 06:37:49] VERSION="7 (Core)"
[2025-12-03 06:37:49] ID="centos"
[2025-12-03 06:37:49] ID_LIKE="rhel fedora"
[2025-12-03 06:37:49] VERSION_ID="7"
[2025-12-03 06:37:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 06:37:49] ANSI_COLOR="0;31"
[2025-12-03 06:37:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 06:37:49] HOME_URL="https://www.centos.org/"
[2025-12-03 06:37:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 06:37:49] 
[2025-12-03 06:37:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 06:37:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 06:37:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 06:37:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 06:37:49] 
[2025-12-03 06:37:49] 2025-12-03 11:37:10,787 | INFO     | ***************************************
[2025-12-03 06:37:49] 2025-12-03 11:37:11,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-03 06:37:49] 2025-12-03 11:37:11,628 | INFO     | sufficient remaining disk space (162473705472 B)
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | INFO     | update_server=False
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:37:49] 2025-12-03 11:37:11,629 | INFO     | aborting loop
[2025-12-03 06:37:49] 2025-12-03 11:37:11,965 | INFO     | all job control threads have been joined
[2025-12-03 06:37:49] 2025-12-03 11:37:12,301 | INFO     | all data control threads have been joined
[2025-12-03 06:37:49] 2025-12-03 11:37:12,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 06:37:49] 2025-12-03 11:37:12,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 06:37:49] 2025-12-03 11:37:12,635 | INFO     | [job] job monitor thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:12,639 | INFO     | [job] retrieve thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:12,657 | INFO     | all payload control threads have been joined
[2025-12-03 06:37:49] 2025-12-03 11:37:12,846 | INFO     | [payload] validate_post thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:12,907 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:12,972 | INFO     | [job] control thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,131 | INFO     | [data] copytool_in thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,152 | INFO     | [payload] failed_post thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,309 | INFO     | [data] control thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,433 | INFO     | [job] queue monitor thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 06:37:49] 2025-12-03 11:37:13,466 | INFO     | [job] validate thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,501 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,663 | INFO     | [payload] control thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,941 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:13,946 | INFO     | [monitor] cgroup control has ended
[2025-12-03 06:37:49] 2025-12-03 11:37:14,432 | INFO     | [data] copytool_out thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:17,458 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:22,093 | INFO     | job.realtimelogging is not enabled
[2025-12-03 06:37:49] 2025-12-03 11:37:23,099 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 06:37:49] 2025-12-03 11:37:24,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570840409920)>', '<ExcThread(monitor, started 140570479535872)>']
[2025-12-03 06:37:49] 2025-12-03 11:37:30,016 | INFO     | all workflow threads have been joined
[2025-12-03 06:37:49] 2025-12-03 11:37:30,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 06:37:49] 2025-12-03 11:37:30,016 | INFO     | traces error code: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:30,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | INFO     | PID=3398156 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | INFO     | .. there are 40 such processes running
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 06:37:49] 2025-12-03 11:37:46,506 | INFO     | [monitor] control thread has ended
[2025-12-03 06:37:49] 2025-12-03 11:37:47,532 [wrapper] ==== pilot stdout END ====
[2025-12-03 06:37:49] 2025-12-03 11:37:47,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 06:37:49] 2025-12-03 11:37:47,568 [wrapper] pilotpid: 3398156
[2025-12-03 06:37:49] 2025-12-03 11:37:47,687 [wrapper] Pilot exit status: 0
[2025-12-03 06:37:49] 2025-12-03 11:37:47,815 [wrapper] pandaids: 6904974451
[2025-12-03 06:37:49] 2025-12-03 11:37:48,494 [wrapper] cleanup supervisor_pilot 2101865 3398157
[2025-12-03 06:37:49] 2025-12-03 11:37:48,519 [wrapper] Test setup, not cleaning
[2025-12-03 06:37:49] 2025-12-03 11:37:48,558 [wrapper] apfmon messages muted
[2025-12-03 06:37:49] 2025-12-03 11:37:48,610 [wrapper] ==== wrapper stdout END ====
[2025-12-03 06:37:49] 2025-12-03 11:37:48,722 [wrapper] ==== wrapper stderr END ====
[2025-12-03 06:37:49]  *** Error codes and diagnostics ***
[2025-12-03 06:37:49]     "exeErrorCode": 0,
[2025-12-03 06:37:49]     "exeErrorDiag": "",
[2025-12-03 06:37:49]     "pilotErrorCode": 0,
[2025-12-03 06:37:49]     "pilotErrorDiag": "",
[2025-12-03 06:37:49]  *** Listing of results directory ***
[2025-12-03 06:37:49] total 1076072
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-03 06:37:49] -rwx------. 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:23 queuedata.json
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas       100 Dec  2 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 06:37:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 21:03 run_atlas
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas       105 Dec  2 21:03 job.xml
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas 377345048 Dec  2 21:03 EVNT.47528871._000023.pool.root.1
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:03 start_atlas.sh
[2025-12-03 06:37:49] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 21:03 shared
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas    590140 Dec  2 21:03 input.tar.gz
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas         0 Dec  2 21:03 boinc_lockfile
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas      2879 Dec  2 21:03 pandaJob.out
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas        57 Dec  2 21:03 setup.sh.local
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas    989300 Dec  2 21:05 agis_schedconf.cvmfs.json
[2025-12-03 06:37:49] drwx------. 5 boincer umatlas      4096 Dec  2 21:05 pilot3
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas       533 Dec  3 06:07 boinc_task_state.xml
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas      7175 Dec  3 06:30 init_data.xml
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas 708410979 Dec  3 06:35 HITS.47538113._001913.pool.root.1
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas      1072 Dec  3 06:36 memory_monitor_summary.json
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas   1516240 Dec  3 06:36 agis_ddmendpoints.agis.ALL.json
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas   1898167 Dec  3 06:36 log.47538113._001913.job.log.tgz.1
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas        95 Dec  3 06:36 pilot_heartbeat.json
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas     28757 Dec  3 06:37 heartbeat.json
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 06:37 boinc_mmap_file
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas        29 Dec  3 06:37 wrapper_checkpoint.txt
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas       823 Dec  3 06:37 pilotlog.txt
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas   4192483 Dec  3 06:37 log.47538113._001913.job.log.1
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas       353 Dec  3 06:37 output.list
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas       620 Dec  3 06:37 runtime_log
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas   6133760 Dec  3 06:37 result.tar.gz
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 06:37 runtime_log.err
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas       664 Dec  3 06:37 qT9MDmLKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN4LKDmvaW4Xm.diag
[2025-12-03 06:37:49] -rw-r--r--. 1 boincer umatlas     21867 Dec  3 06:37 stderr.txt
[2025-12-03 06:37:49] HITS file was successfully produced:
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas 708410979 Dec  3 06:35 shared/HITS.pool.root.1
[2025-12-03 06:37:49]  *** Contents of shared directory: ***
[2025-12-03 06:37:49] total 1066908
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas 377345048 Dec  2 21:03 ATLAS.root_0
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 21:03 start_atlas.sh
[2025-12-03 06:37:49] -rw-r--r--. 2 boincer umatlas    590140 Dec  2 21:03 input.tar.gz
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas 708410979 Dec  3 06:35 HITS.pool.root.1
[2025-12-03 06:37:49] -rw-------. 1 boincer umatlas   6133760 Dec  3 06:37 result.tar.gz
06:37:51 (3377883): run_atlas exited; CPU time 124109.804485
06:37:51 (3377883): called boinc_finish(0)

</stderr_txt>
]]>

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