Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
23:16:29 (584390): wrapper (7.7.26015): starting
23:16:29 (584390): wrapper: running run_atlas (--nthreads 10)
[2025-12-06 23:16:29] Arguments: --nthreads 10
[2025-12-06 23:16:29] Threads: 10
[2025-12-06 23:16:29] Checking for CVMFS
[2025-12-06 23:16:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-06 23:16:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-06 23:16:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-06 23:16:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-06 23:16:30] 2.13.3.0 8606 8016 63332 153719 0 92 3384711 4096001 10821 130560 0 26010306 99.968 959284 684 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-06 23:16:30] CVMFS is ok
[2025-12-06 23:16:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 23:16:30] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-06 23:16:30] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-06 23:16:30] Further information can be found at the LHC@home message board.
[2025-12-06 23:16:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 23:16:30] Checking for apptainer binary...
[2025-12-06 23:16:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-06 23:16:30] Running /usr/bin/apptainer --version
[2025-12-06 23:16:30] apptainer version 1.4.2
[2025-12-06 23:16:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 23:16:31] 3950x-linux
[2025-12-06 23:16:31] apptainer works
[2025-12-06 23:16:31] Set ATHENA_PROC_NUMBER=10
[2025-12-06 23:16:31] Set ATHENA_CORE_NUMBER=10
[2025-12-06 23:16:31] Starting ATLAS job with PandaID=6895559482
[2025-12-06 23:16:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc241/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-07 21:48:29]  *** The last 200 lines of the pilot log: ***
[2025-12-07 21:48:29] 2025-12-08 05:47:16,176 | INFO     | time since job start (81008s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:17,600 | INFO     | monitor loop #5246: job 0:6895559482 is in state 'finished'
[2025-12-07 21:48:29] 2025-12-08 05:47:17,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 21:48:29] 2025-12-08 05:47:18,184 | INFO     | time since job start (81010s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:20,108 | INFO     | monitor loop #5247: job 0:6895559482 is in state 'finished'
[2025-12-07 21:48:29] 2025-12-08 05:47:20,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 21:48:29] 2025-12-08 05:47:20,189 | INFO     | time since job start (81012s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:22,197 | INFO     | time since job start (81014s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:22,614 | INFO     | monitor loop #5248: job 0:6895559482 is in state 'finished'
[2025-12-07 21:48:29] 2025-12-08 05:47:22,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 21:48:29] 2025-12-08 05:47:24,207 | INFO     | time since job start (81016s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:25,118 | INFO     | monitor loop #5249: job 0:6895559482 is in state 'finished'
[2025-12-07 21:48:29] 2025-12-08 05:47:25,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 21:48:29] 2025-12-08 05:47:26,217 | INFO     | time since job start (81018s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,378 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-07 21:48:29] 2025-12-08 05:47:27,387 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3400.1222812499996
[2025-12-07 21:48:29] 2025-12-08 05:47:27,405 | INFO     | using path: /var/lib/multiboinc/boinc241/slots/2/PanDA_Pilot-6895559482/memory_monitor_summary.json (trf name=prmon)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,406 | INFO     | extracted standard info from prmon json
[2025-12-07 21:48:29] 2025-12-08 05:47:27,406 | INFO     | extracted standard memory fields from prmon json
[2025-12-07 21:48:29] 2025-12-08 05:47:27,406 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-07 21:48:29] 2025-12-08 05:47:27,457 | INFO     | fitting pss+swap vs Time
[2025-12-07 21:48:29] 2025-12-08 05:47:27,465 | INFO     | sum of square deviations: 724586955878.1309
[2025-12-07 21:48:29] 2025-12-08 05:47:27,579 | INFO     | sum of deviations: 2832150840856.041
[2025-12-07 21:48:29] 2025-12-08 05:47:27,579 | INFO     | mean x: 1765132355.8402412
[2025-12-07 21:48:29] 2025-12-08 05:47:27,579 | INFO     | mean y: 3137344.1228334587
[2025-12-07 21:48:29] 2025-12-08 05:47:27,579 | INFO     | intersect: -6896132709.333596
[2025-12-07 21:48:29] 2025-12-08 05:47:27,580 | INFO     | chi2: 15.251555666947327
[2025-12-07 21:48:29] 2025-12-08 05:47:27,587 | INFO     | sum of square deviations: 716428812906.6151
[2025-12-07 21:48:29] 2025-12-08 05:47:27,627 | INFO     | monitor loop #5250: job 0:6895559482 is in state 'finished'
[2025-12-07 21:48:29] 2025-12-08 05:47:27,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,663 | INFO     | sum of deviations: 3342007820788.167
[2025-12-07 21:48:29] 2025-12-08 05:47:27,665 | INFO     | mean x: 1765132203.3547654
[2025-12-07 21:48:29] 2025-12-08 05:47:27,665 | INFO     | mean y: 3146871.758698941
[2025-12-07 21:48:29] 2025-12-08 05:47:27,665 | INFO     | intersect: -8230868179.092708
[2025-12-07 21:48:29] 2025-12-08 05:47:27,667 | INFO     | chi2: 11.720716028100995
[2025-12-07 21:48:29] 2025-12-08 05:47:27,667 | INFO     | current chi2=11.720716028100995 (change=23.150685188778823 %)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,667 | INFO     | right removable region: 1321
[2025-12-07 21:48:29] 2025-12-08 05:47:27,668 | INFO     | sum of square deviations: 716425704346.6151
[2025-12-07 21:48:29] 2025-12-08 05:47:27,766 | INFO     | sum of deviations: 2305644006329.1875
[2025-12-07 21:48:29] 2025-12-08 05:47:27,770 | INFO     | mean x: 1765132508.3547654
[2025-12-07 21:48:29] 2025-12-08 05:47:27,770 | INFO     | mean y: 3147180.6051437217
[2025-12-07 21:48:29] 2025-12-08 05:47:27,770 | INFO     | intersect: -5677507719.928644
[2025-12-07 21:48:29] 2025-12-08 05:47:27,777 | INFO     | chi2: 11.866459969056585
[2025-12-07 21:48:29] 2025-12-08 05:47:27,777 | INFO     | current chi2=11.866459969056585 (change=22.195084697011012 %)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,777 | INFO     | left removable region: 10
[2025-12-07 21:48:29] 2025-12-08 05:47:27,779 | INFO     | sum of square deviations: 698691357668.6746
[2025-12-07 21:48:29] 2025-12-08 05:47:27,844 | INFO     | sum of deviations: 2595288279094.5005
[2025-12-07 21:48:29] 2025-12-08 05:47:27,848 | INFO     | mean x: 1765132477.8817697
[2025-12-07 21:48:29] 2025-12-08 05:47:27,848 | INFO     | mean y: 3164423.1967963385
[2025-12-07 21:48:29] 2025-12-08 05:47:27,848 | INFO     | intersect: -6553418223.225391
[2025-12-07 21:48:29] 2025-12-08 05:47:27,855 | INFO     | chi2: 6.576038563215956
[2025-12-07 21:48:29] 2025-12-08 05:47:27,855 | INFO     | current memory leak: 3.71 B/s (using 1311 data points, chi2=6.58)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,856 | INFO     | could have reported an average CPU frequency of 3400 MHz (48 samples)
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | ..............................
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . Timing measurements:
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . get job = 0 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . initial setup = 5 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . payload setup = 22 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . stage-in = 0 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . payload execution = 80915 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . stage-out = 10 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | . log creation = 3 s
[2025-12-07 21:48:29] 2025-12-08 05:47:27,857 | INFO     | ..............................
[2025-12-07 21:48:29] 2025-12-08 05:47:28,225 | INFO     | time since job start (81020s) is within the limit (172800.0s)
[2025-12-07 21:48:29] 2025-12-08 05:47:28,522 | INFO     | 
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | job summary report
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | --------------------------------------------------
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | PanDA job id: 6895559482
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | task id: 47556161
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | errors: (none)
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | pilot state: finished 
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | transexitcode: 0
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | exeerrorcode: 0
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | exeerrordiag: 
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | exitcode: 0
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | exitmsg: OK
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | cpuconsumptiontime: 210371 s
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | nevents: 1000
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | neventsw: 0
[2025-12-07 21:48:29] 2025-12-08 05:47:28,523 | INFO     | pid: 595068
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | pgrp: 595068
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | corecount: 10
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | event service: False
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | sizes: {0: 2284049, 1: 2284133, 2: 2284332, 13: 2284332, 20: 2284650, 24: 2284678, 80942: 2349330, 80953: 2358352, 80955: 2358408, 80978: 2358654}
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | --------------------------------------------------
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | 
[2025-12-07 21:48:29] 2025-12-08 05:47:28,524 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc241/slots/2
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | job 6895559482 has completed (purged errors)
[2025-12-07 21:48:29] 2025-12-08 05:47:28,595 | INFO     | overall cleanup function is called
[2025-12-07 21:48:29] 2025-12-08 05:47:29,658 | INFO     | --- collectZombieJob: --- 10, [595068]
[2025-12-07 21:48:29] 2025-12-08 05:47:29,659 | INFO     | zombie collector waiting for pid 595068
[2025-12-07 21:48:29] 2025-12-08 05:47:29,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-07 21:48:29] 2025-12-08 05:47:29,659 | INFO     | collected zombie processes
[2025-12-07 21:48:29] 2025-12-08 05:47:29,659 | INFO     | will attempt to kill all subprocesses of pid=595068
[2025-12-07 21:48:29] 2025-12-08 05:47:30,349 | INFO     | process IDs to be killed: [595068] (in reverse order)
[2025-12-07 21:48:29] 2025-12-08 05:47:30,679 | WARNING  | found no corresponding commands to process id(s)
[2025-12-07 21:48:29] 2025-12-08 05:47:30,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-07 21:48:29] 2025-12-08 05:47:30,716 | INFO     | did not find any defunct processes belonging to 595068
[2025-12-07 21:48:29] 2025-12-08 05:47:30,741 | INFO     | did not find any defunct processes belonging to 595068
[2025-12-07 21:48:29] 2025-12-08 05:47:30,749 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-07 21:48:29] 2025-12-08 05:47:30,749 | INFO     | ready for new job
[2025-12-07 21:48:29] 2025-12-08 05:47:30,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-07 21:48:29] 2025-12-08 05:47:30,771 | INFO     | ***************************************
[2025-12-07 21:48:29] 2025-12-08 05:47:30,771 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-07 21:48:29] 2025-12-08 05:47:30,771 | INFO     | ***************************************
[2025-12-07 21:48:29] 2025-12-08 05:47:30,771 | INFO     | 
[2025-12-07 21:48:29] 2025-12-08 05:47:30,782 | INFO     | architecture information:
[2025-12-07 21:48:29] 2025-12-08 05:47:30,783 | INFO     | executing command: cat /etc/os-release
[2025-12-07 21:48:29] 2025-12-08 05:47:30,885 | INFO     | cat /etc/os-release:
[2025-12-07 21:48:29] NAME="CentOS Linux"
[2025-12-07 21:48:29] VERSION="7 (Core)"
[2025-12-07 21:48:29] ID="centos"
[2025-12-07 21:48:29] ID_LIKE="rhel fedora"
[2025-12-07 21:48:29] VERSION_ID="7"
[2025-12-07 21:48:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-07 21:48:29] ANSI_COLOR="0;31"
[2025-12-07 21:48:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-07 21:48:29] HOME_URL="https://www.centos.org/"
[2025-12-07 21:48:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-07 21:48:29] 
[2025-12-07 21:48:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-07 21:48:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-07 21:48:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-07 21:48:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-07 21:48:29] 
[2025-12-07 21:48:29] 2025-12-08 05:47:30,885 | INFO     | ***************************************
[2025-12-07 21:48:29] 2025-12-08 05:47:31,388 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc241/slots/2
[2025-12-07 21:48:29] 2025-12-08 05:47:31,467 | INFO     | sufficient remaining disk space (59489910784 B)
[2025-12-07 21:48:29] 2025-12-08 05:47:31,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-07 21:48:29] 2025-12-08 05:47:31,467 | INFO     | current server update state: UPDATING_FINAL
[2025-12-07 21:48:29] 2025-12-08 05:47:31,468 | INFO     | update_server=False
[2025-12-07 21:48:29] 2025-12-08 05:47:31,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-07 21:48:29] 2025-12-08 05:47:31,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-07 21:48:29] 2025-12-08 05:47:31,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-07 21:48:29] 2025-12-08 05:47:31,469 | INFO     | aborting loop
[2025-12-07 21:48:29] 2025-12-08 05:47:31,764 | INFO     | all data control threads have been joined
[2025-12-07 21:48:29] 2025-12-08 05:47:32,287 | INFO     | all payload control threads have been joined
[2025-12-07 21:48:29] 2025-12-08 05:47:32,473 | INFO     | [job] retrieve thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:32,475 | INFO     | [job] job monitor thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:32,633 | INFO     | all job control threads have been joined
[2025-12-07 21:48:29] 2025-12-08 05:47:32,770 | INFO     | [data] control thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:32,775 | INFO     | [payload] failed_post thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:32,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,057 | INFO     | [payload] execute_payloads thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-07 21:48:29] 2025-12-08 05:47:33,211 | INFO     | [payload] validate_pre thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,218 | INFO     | [payload] validate_post thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,293 | INFO     | [payload] control thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,473 | INFO     | [data] copytool_out thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-07 21:48:29] 2025-12-08 05:47:33,528 | INFO     | [data] copytool_in thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,639 | INFO     | [job] control thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,932 | INFO     | [job] validate thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:33,965 | INFO     | [job] create_data_payload thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:34,115 | INFO     | [job] queue monitor thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:47:37,504 | INFO     | [data] queue_monitor thread has finished
[2025-12-07 21:48:29] 2025-12-08 05:48:02,090 | INFO     | PID=588293 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-07 21:48:29] 2025-12-08 05:48:02,090 | INFO     | .. there are 12 such processes running
[2025-12-07 21:48:29] 2025-12-08 05:48:02,090 | INFO     | found 0 job(s) in 20 queues
[2025-12-07 21:48:29] 2025-12-08 05:48:02,090 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-07 21:48:29] 2025-12-08 05:48:02,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-07 21:48:29] 2025-12-08 05:48:23,540 | INFO     | [monitor] cgroup control has ended
[2025-12-07 21:48:29] 2025-12-08 05:48:23,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123630881589056)>', '<ExcThread(monitor, started 123630524540672)>']
[2025-12-07 21:48:29] 2025-12-08 05:48:24,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-07 21:48:29] 2025-12-08 05:48:24,211 | INFO     | [monitor] control thread has ended
[2025-12-07 21:48:29] 2025-12-08 05:48:28,635 | INFO     | all workflow threads have been joined
[2025-12-07 21:48:29] 2025-12-08 05:48:28,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-07 21:48:29] 2025-12-08 05:48:28,636 | INFO     | traces error code: 0
[2025-12-07 21:48:29] 2025-12-08 05:48:28,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-07 21:48:29] 2025-12-08 05:48:29,119 [wrapper] ==== pilot stdout END ====
[2025-12-07 21:48:29] 2025-12-08 05:48:29,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-07 21:48:29] 2025-12-08 05:48:29,142 [wrapper] pilotpid: 588293
[2025-12-07 21:48:29] 2025-12-08 05:48:29,157 [wrapper] Pilot exit status: 0
[2025-12-07 21:48:29] 2025-12-08 05:48:29,224 [wrapper] pandaids: 6895559482
[2025-12-07 21:48:29] 2025-12-08 05:48:29,489 [wrapper] cleanup supervisor_pilot 2106077 588294
[2025-12-07 21:48:29] 2025-12-08 05:48:29,500 [wrapper] Test setup, not cleaning
[2025-12-07 21:48:29] 2025-12-08 05:48:29,518 [wrapper] apfmon messages muted
[2025-12-07 21:48:29] 2025-12-08 05:48:29,530 [wrapper] ==== wrapper stdout END ====
[2025-12-07 21:48:29] 2025-12-08 05:48:29,544 [wrapper] ==== wrapper stderr END ====
[2025-12-07 21:48:29]  *** Error codes and diagnostics ***
[2025-12-07 21:48:29]     "exeErrorCode": 0,
[2025-12-07 21:48:29]     "exeErrorDiag": "",
[2025-12-07 21:48:29]     "pilotErrorCode": 0,
[2025-12-07 21:48:29]     "pilotErrorDiag": "",
[2025-12-07 21:48:29]  *** Listing of results directory ***
[2025-12-07 21:48:29] total 1332460
[2025-12-07 21:48:29] -rw-r--r-- 1 root root    576529 Nov 24 02:13 pilot3.tar.gz
[2025-12-07 21:48:29] -rw-r--r-- 1 root root      5112 Nov 24 02:42 queuedata.json
[2025-12-07 21:48:29] -rwx------ 1 4871 1028     36292 Nov 24 02:45 runpilot2-wrapper.sh
[2025-12-07 21:48:29] -rw-r--r-- 1 root root       100 Dec  6 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-07 21:48:29] -rwxr-xr-x 1 root root      7986 Dec  6 23:16 run_atlas
[2025-12-07 21:48:29] -rw-r--r-- 1 root root       105 Dec  6 23:16 job.xml
[2025-12-07 21:48:29] -rw-r--r-- 2 root root 410532111 Dec  6 23:16 EVNT.47483658._002034.pool.root.1
[2025-12-07 21:48:29] drwxrwx--x 2 root root      4096 Dec  6 23:16 shared
[2025-12-07 21:48:29] -rw-r--r-- 2 root root    590107 Dec  6 23:16 input.tar.gz
[2025-12-07 21:48:29] -rw-r--r-- 2 root root     15847 Dec  6 23:16 start_atlas.sh
[2025-12-07 21:48:29] -rw-r--r-- 1 root root         0 Dec  6 23:16 boinc_setup_complete
[2025-12-07 21:48:29] -rw-r--r-- 1 root root      9229 Dec  6 23:16 init_data.xml
[2025-12-07 21:48:29] -rw-r--r-- 1 root root         0 Dec  6 23:16 boinc_lockfile
[2025-12-07 21:48:29] -rw-r--r-- 1 root root      2784 Dec  6 23:16 pandaJob.out
[2025-12-07 21:48:29] -rw------- 1 root root    981451 Dec  6 23:17 agis_schedconf.cvmfs.json
[2025-12-07 21:48:29] drwxr-xr-x 5  320  320      4096 Dec  6 23:17 pilot3
[2025-12-07 21:48:29] -rw-r--r-- 1 root root       533 Dec  7 21:20 boinc_task_state.xml
[2025-12-07 21:48:29] -rw------- 1 root root 922687060 Dec  7 21:45 HITS.47556161._000176.pool.root.1
[2025-12-07 21:48:29] -rw------- 1 root root      1048 Dec  7 21:46 memory_monitor_summary.json
[2025-12-07 21:48:29] -rw------- 1 root root   1516240 Dec  7 21:46 agis_ddmendpoints.agis.ALL.json
[2025-12-07 21:48:29] -rw------- 1 root root   2646379 Dec  7 21:47 log.47556161._000176.job.log.tgz.1
[2025-12-07 21:48:29] -rw------- 1 root root        95 Dec  7 21:47 pilot_heartbeat.json
[2025-12-07 21:48:29] -rw------- 1 root root      8614 Dec  7 21:47 heartbeat.json
[2025-12-07 21:48:29] -rw-r--r-- 1 root root      8192 Dec  7 21:48 boinc_mmap_file
[2025-12-07 21:48:29] -rw-r--r-- 1 root root        29 Dec  7 21:48 wrapper_checkpoint.txt
[2025-12-07 21:48:29] -rw------- 1 root root      4837 Dec  7 21:48 pilotlog.txt
[2025-12-07 21:48:29] -rw------- 1 root root  11009410 Dec  7 21:48 log.47556161._000176.job.log.1
[2025-12-07 21:48:29] -rw------- 1 root root       353 Dec  7 21:48 output.list
[2025-12-07 21:48:29] -rw-r--r-- 1 root root       620 Dec  7 21:48 runtime_log
[2025-12-07 21:48:29] -rw------- 1 root root  13670400 Dec  7 21:48 result.tar.gz
[2025-12-07 21:48:29] -rw-r--r-- 1 root root      9021 Dec  7 21:48 runtime_log.err
[2025-12-07 21:48:29] -rw------- 1 root root       662 Dec  7 21:48 jBGODm6Fjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9bLKDmMGdtGm.diag
[2025-12-07 21:48:29] -rw-r--r-- 1 root root     21901 Dec  7 21:48 stderr.txt
[2025-12-07 21:48:30] HITS file was successfully produced:
[2025-12-07 21:48:30] -rw------- 1 root root 922687060 Dec  7 21:45 shared/HITS.pool.root.1
[2025-12-07 21:48:30]  *** Contents of shared directory: ***
[2025-12-07 21:48:30] total 1315932
[2025-12-07 21:48:30] -rw-r--r-- 2 root root 410532111 Dec  6 23:16 ATLAS.root_0
[2025-12-07 21:48:30] -rw-r--r-- 2 root root    590107 Dec  6 23:16 input.tar.gz
[2025-12-07 21:48:30] -rw-r--r-- 2 root root     15847 Dec  6 23:16 start_atlas.sh
[2025-12-07 21:48:30] -rw------- 1 root root 922687060 Dec  7 21:45 HITS.pool.root.1
[2025-12-07 21:48:30] -rw------- 1 root root  13670400 Dec  7 21:48 result.tar.gz
21:48:31 (584390): run_atlas exited; CPU time 210462.370823
21:48:31 (584390): called boinc_finish(0)

</stderr_txt>
]]>

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