Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:37:50 (680665): wrapper (7.7.26015): starting
20:37:50 (680665): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 20:37:50] Arguments: --nthreads 8
[2025-12-02 20:37:50] Threads: 8
[2025-12-02 20:37:50] Checking for CVMFS
[2025-12-02 20:37:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 20:37:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 20:37:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 20:37:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 20:37:52] 2.13.3.0 9582 39457 257216 153576 2 593 36195081 40960000 47393 16776704 0 527520820 99.727 364309897 46884 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 20:37:52] CVMFS is ok
[2025-12-02 20:37:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 20:37:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 20:37:52] Further information can be found at the LHC@home message board.
[2025-12-02 20:37:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 20:37:52] Checking for apptainer binary...
[2025-12-02 20:37:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 20:37:52] Running /usr/bin/apptainer --version
[2025-12-02 20:37:52] apptainer version 1.4.4-1.el9
[2025-12-02 20:37:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 20:37:53] c8-7-4.aglt2.org
[2025-12-02 20:37:53] apptainer works
[2025-12-02 20:37:53] Set ATHENA_PROC_NUMBER=8
[2025-12-02 20:37:53] Set ATHENA_CORE_NUMBER=8
[2025-12-02 20:37:53] Starting ATLAS job with PandaID=6905025690
[2025-12-02 20:37:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 01:16:46]  *** The last 200 lines of the pilot log: ***
[2025-12-03 01:16:46] 2025-12-03 06:15:29,399 | INFO     | PID=689483 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 01:16:46] 2025-12-03 06:15:29,399 | INFO     | .. there are 52 such processes running
[2025-12-03 01:16:46] 2025-12-03 06:15:30,401 | INFO     | time since job start (16585s) is within the limit (172800.0s)
[2025-12-03 01:16:46] 2025-12-03 06:15:30,644 | INFO     | monitor loop #919: job 0:6905025690 is in state 'finished'
[2025-12-03 01:16:46] 2025-12-03 06:15:30,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:16:46] 2025-12-03 06:15:32,409 | INFO     | time since job start (16587s) is within the limit (172800.0s)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,149 | INFO     | monitor loop #920: job 0:6905025690 is in state 'finished'
[2025-12-03 01:16:46] 2025-12-03 06:15:33,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,869 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 01:16:46] 2025-12-03 06:15:33,885 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9870546874995
[2025-12-03 01:16:46] 2025-12-03 06:15:33,932 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6905025690/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,933 | INFO     | extracted standard info from prmon json
[2025-12-03 01:16:46] 2025-12-03 06:15:33,933 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 01:16:46] 2025-12-03 06:15:33,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 01:16:46] 2025-12-03 06:15:33,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-03 01:16:46] 2025-12-03 06:15:33,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-03 01:16:46] 2025-12-03 06:15:33,948 | INFO     | fitting pss+swap vs Time
[2025-12-03 01:16:46] 2025-12-03 06:15:33,948 | INFO     | sum of square deviations: 6035809596.795525
[2025-12-03 01:16:46] 2025-12-03 06:15:33,949 | INFO     | sum of deviations: -28160813639.73978
[2025-12-03 01:16:46] 2025-12-03 06:15:33,949 | INFO     | mean x: 1764734268.0669146
[2025-12-03 01:16:46] 2025-12-03 06:15:33,949 | INFO     | mean y: 2611683.096654275
[2025-12-03 01:16:46] 2025-12-03 06:15:33,949 | INFO     | intersect: 8236196929.56952
[2025-12-03 01:16:46] 2025-12-03 06:15:33,949 | INFO     | chi2: 2.9998159985767705
[2025-12-03 01:16:46] 2025-12-03 06:15:33,950 | INFO     | sum of square deviations: 5705464706.772757
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | sum of deviations: -10075285125.318174
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | mean x: 1764734115.5681818
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | mean y: 2619911.2954545454
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | intersect: 3118965432.391988
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | chi2: 2.3346517996645346
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | current chi2=2.3346517996645346 (change=22.173499948924054 %)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,963 | INFO     | right removable region: 263
[2025-12-03 01:16:46] 2025-12-03 06:15:33,964 | INFO     | sum of square deviations: 5705453726.772756
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | sum of deviations: -82078252873.11363
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | mean x: 1764734420.5681818
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | mean y: 2636394.7007575757
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | intersect: 25389980672.964504
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | chi2: 1.0267439155063385
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | current chi2=1.0267439155063385 (change=65.77310355056892 %)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,965 | INFO     | sum of square deviations: 5387377156.749022
[2025-12-03 01:16:46] 2025-12-03 06:15:33,966 | INFO     | sum of deviations: -79920840893.94983
[2025-12-03 01:16:46] 2025-12-03 06:15:33,966 | INFO     | mean x: 1764734573.069498
[2025-12-03 01:16:46] 2025-12-03 06:15:33,966 | INFO     | mean y: 2635337.3861003863
[2025-12-03 01:16:46] 2025-12-03 06:15:33,980 | INFO     | intersect: 26182178170.702225
[2025-12-03 01:16:46] 2025-12-03 06:15:33,981 | INFO     | chi2: 1.0148424838339976
[2025-12-03 01:16:46] 2025-12-03 06:15:33,981 | INFO     | current chi2=1.0148424838339976 (change=1.1591431410111386 %)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,981 | INFO     | left removable region: 20
[2025-12-03 01:16:46] 2025-12-03 06:15:33,981 | INFO     | sum of square deviations: 4449353316.666668
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | sum of deviations: -37815783063.2963
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | mean x: 1764734695.074074
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | mean y: 2631956.349794239
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | intersect: 15001401360.257105
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | chi2: 0.2576476290517377
[2025-12-03 01:16:46] 2025-12-03 06:15:33,982 | INFO     | current memory leak: -8.50 B/s (using 243 data points, chi2=0.26)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | could have reported an average CPU frequency of 3799 MHz (12 samples)
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | ..............................
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . Timing measurements:
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . get job = 0 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . initial setup = 4 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . payload setup = 33 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . stage-in = 0 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . payload execution = 16421 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . stage-out = 6 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | . log creation = 0 s
[2025-12-03 01:16:46] 2025-12-03 06:15:33,983 | INFO     | ..............................
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | 
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | job summary report
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | --------------------------------------------------
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | PanDA job id: 6905025690
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | task id: 47523969
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | errors: (none)
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | pilot state: finished 
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | transexitcode: 0
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | exeerrorcode: 0
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | exeerrordiag: 
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | exitcode: 0
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | exitmsg: OK
[2025-12-03 01:16:46] 2025-12-03 06:15:34,222 | INFO     | cpuconsumptiontime: 65267 s
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | nevents: 400
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | neventsw: 0
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | pid: 711175
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | pgrp: 711175
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | corecount: 8
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | event service: False
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | sizes: {0: 2283720, 1: 2283919, 12: 2283919, 23: 2283947, 34: 2283975, 37: 2284265, 44: 2284421, 16461: 2315747, 16468: 2324745, 16470: 2324801, 16511: 2324995}
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | --------------------------------------------------
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | 
[2025-12-03 01:16:46] 2025-12-03 06:15:34,223 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,327 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 01:16:46] 2025-12-03 06:15:34,328 | INFO     | job 6905025690 has completed (purged errors)
[2025-12-03 01:16:46] 2025-12-03 06:15:34,328 | INFO     | overall cleanup function is called
[2025-12-03 01:16:46] 2025-12-03 06:15:35,365 | INFO     | --- collectZombieJob: --- 10, [711175]
[2025-12-03 01:16:46] 2025-12-03 06:15:35,366 | INFO     | zombie collector waiting for pid 711175
[2025-12-03 01:16:46] 2025-12-03 06:15:35,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 01:16:46] 2025-12-03 06:15:35,366 | INFO     | collected zombie processes
[2025-12-03 01:16:46] 2025-12-03 06:15:35,366 | INFO     | will attempt to kill all subprocesses of pid=711175
[2025-12-03 01:16:46] 2025-12-03 06:15:39,433 | INFO     | process IDs to be killed: [711175] (in reverse order)
[2025-12-03 01:16:46] 2025-12-03 06:15:42,823 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 01:16:46] 2025-12-03 06:15:42,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 01:16:46] 2025-12-03 06:15:43,010 | INFO     | did not find any defunct processes belonging to 711175
[2025-12-03 01:16:46] 2025-12-03 06:15:43,425 | INFO     | did not find any defunct processes belonging to 711175
[2025-12-03 01:16:46] 2025-12-03 06:15:43,510 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:16:46] 2025-12-03 06:15:43,511 | INFO     | ready for new job
[2025-12-03 01:16:46] 2025-12-03 06:15:43,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 01:16:46] 2025-12-03 06:15:43,513 | INFO     | ***************************************
[2025-12-03 01:16:46] 2025-12-03 06:15:43,513 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 01:16:46] 2025-12-03 06:15:43,513 | INFO     | ***************************************
[2025-12-03 01:16:46] 2025-12-03 06:15:43,513 | INFO     | 
[2025-12-03 01:16:46] 2025-12-03 06:15:43,546 | INFO     | architecture information:
[2025-12-03 01:16:46] 2025-12-03 06:15:43,567 | INFO     | executing command: cat /etc/os-release
[2025-12-03 01:16:46] 2025-12-03 06:15:43,720 | INFO     | cat /etc/os-release:
[2025-12-03 01:16:46] NAME="CentOS Linux"
[2025-12-03 01:16:46] VERSION="7 (Core)"
[2025-12-03 01:16:46] ID="centos"
[2025-12-03 01:16:46] ID_LIKE="rhel fedora"
[2025-12-03 01:16:46] VERSION_ID="7"
[2025-12-03 01:16:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 01:16:46] ANSI_COLOR="0;31"
[2025-12-03 01:16:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 01:16:46] HOME_URL="https://www.centos.org/"
[2025-12-03 01:16:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 01:16:46] 
[2025-12-03 01:16:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 01:16:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 01:16:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 01:16:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 01:16:46] 
[2025-12-03 01:16:46] 2025-12-03 06:15:43,720 | INFO     | ***************************************
[2025-12-03 01:16:46] 2025-12-03 06:15:44,224 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 01:16:46] 2025-12-03 06:15:44,329 | INFO     | sufficient remaining disk space (165544984576 B)
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | INFO     | update_server=False
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:16:46] 2025-12-03 06:15:44,330 | INFO     | aborting loop
[2025-12-03 01:16:46] 2025-12-03 06:15:44,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 01:16:46] 2025-12-03 06:15:44,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 01:16:46] 2025-12-03 06:15:44,976 | INFO     | all data control threads have been joined
[2025-12-03 01:16:46] 2025-12-03 06:15:45,335 | INFO     | [job] retrieve thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,336 | INFO     | [job] queue monitor thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,336 | INFO     | [job] job monitor thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,413 | INFO     | [job] validate thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,515 | INFO     | all payload control threads have been joined
[2025-12-03 01:16:46] 2025-12-03 06:15:45,591 | INFO     | [payload] validate_post thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:45,754 | INFO     | all job control threads have been joined
[2025-12-03 01:16:46] 2025-12-03 06:15:45,982 | INFO     | [data] control thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,037 | INFO     | [data] copytool_in thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,100 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,521 | INFO     | [payload] control thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,575 | INFO     | [payload] failed_post thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,762 | INFO     | [job] control thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,764 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,765 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:46,914 | INFO     | [data] copytool_out thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:15:48,768 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 01:16:46] 2025-12-03 06:16:11,737 | INFO     | PID=689483 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-03 01:16:46] 2025-12-03 06:16:11,737 | INFO     | .. there are 52 such processes running
[2025-12-03 01:16:46] 2025-12-03 06:16:11,751 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 01:16:46] 2025-12-03 06:16:11,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 01:16:46] 2025-12-03 06:16:11,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 01:16:46] 2025-12-03 06:16:34,757 | INFO     | [monitor] cgroup control has ended
[2025-12-03 01:16:46] 2025-12-03 06:16:36,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127285532480)>', '<ExcThread(monitor, started 140126646687488)>']
[2025-12-03 01:16:46] 2025-12-03 06:16:36,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 01:16:46] 2025-12-03 06:16:36,966 | INFO     | [monitor] control thread has ended
[2025-12-03 01:16:46] 2025-12-03 06:16:41,691 | INFO     | all workflow threads have been joined
[2025-12-03 01:16:46] 2025-12-03 06:16:41,691 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 01:16:46] 2025-12-03 06:16:41,691 | INFO     | traces error code: 0
[2025-12-03 01:16:46] 2025-12-03 06:16:41,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 01:16:46] 2025-12-03 06:16:42,893 [wrapper] ==== pilot stdout END ====
[2025-12-03 01:16:46] 2025-12-03 06:16:43,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 01:16:46] 2025-12-03 06:16:43,434 [wrapper] pilotpid: 689483
[2025-12-03 01:16:46] 2025-12-03 06:16:44,093 [wrapper] Pilot exit status: 0
[2025-12-03 01:16:46] 2025-12-03 06:16:44,444 [wrapper] pandaids: 6905025690
[2025-12-03 01:16:46] 2025-12-03 06:16:45,468 [wrapper] cleanup supervisor_pilot 3339274 689484
[2025-12-03 01:16:46] 2025-12-03 06:16:45,499 [wrapper] Test setup, not cleaning
[2025-12-03 01:16:46] 2025-12-03 06:16:45,549 [wrapper] apfmon messages muted
[2025-12-03 01:16:46] 2025-12-03 06:16:45,606 [wrapper] ==== wrapper stdout END ====
[2025-12-03 01:16:46] 2025-12-03 06:16:45,708 [wrapper] ==== wrapper stderr END ====
[2025-12-03 01:16:46]  *** Error codes and diagnostics ***
[2025-12-03 01:16:46]     "exeErrorCode": 0,
[2025-12-03 01:16:46]     "exeErrorDiag": "",
[2025-12-03 01:16:46]     "pilotErrorCode": 0,
[2025-12-03 01:16:46]     "pilotErrorDiag": "",
[2025-12-03 01:16:46]  *** Listing of results directory ***
[2025-12-03 01:16:46] total 628260
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-03 01:16:46] -rwx------. 1 boincer umatlas     36292 Nov 29 19:17 runpilot2-wrapper.sh
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 19:17 queuedata.json
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas       100 Dec  2 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 01:16:46] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 20:37 run_atlas
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas       105 Dec  2 20:37 job.xml
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas 296750262 Dec  2 20:37 EVNT.47523965._000007.pool.root.1
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 20:37 start_atlas.sh
[2025-12-03 01:16:46] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 20:37 shared
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas    589945 Dec  2 20:37 input.tar.gz
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas         0 Dec  2 20:37 boinc_lockfile
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas      2604 Dec  2 20:37 pandaJob.out
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas        57 Dec  2 20:37 setup.sh.local
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas    989300 Dec  2 20:39 agis_schedconf.cvmfs.json
[2025-12-03 01:16:46] drwx------. 5 boincer umatlas      4096 Dec  2 20:39 pilot3
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas      7173 Dec  3 01:10 init_data.xml
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas 337795991 Dec  3 01:13 HITS.47523969._000149.pool.root.1
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas       531 Dec  3 01:13 boinc_task_state.xml
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas      1036 Dec  3 01:14 memory_monitor_summary.json
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas   1516240 Dec  3 01:14 agis_ddmendpoints.agis.ALL.json
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas    484593 Dec  3 01:14 log.47523969._000149.job.log.tgz.1
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas      7763 Dec  3 01:15 heartbeat.json
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas        95 Dec  3 01:16 pilot_heartbeat.json
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas      4824 Dec  3 01:16 pilotlog.txt
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas        28 Dec  3 01:16 wrapper_checkpoint.txt
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 01:16 boinc_mmap_file
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas   1954255 Dec  3 01:16 log.47523969._000149.job.log.1
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas       357 Dec  3 01:16 output.list
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas       620 Dec  3 01:16 runtime_log
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas   2457600 Dec  3 01:16 result.tar.gz
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas      9333 Dec  3 01:16 runtime_log.err
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas       657 Dec  3 01:16 kDlNDmdJkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdFPKDmIuXGfn.diag
[2025-12-03 01:16:46] -rw-r--r--. 1 boincer umatlas     21605 Dec  3 01:16 stderr.txt
[2025-12-03 01:16:46] HITS file was successfully produced:
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas 337795991 Dec  3 01:13 shared/HITS.pool.root.1
[2025-12-03 01:16:46]  *** Contents of shared directory: ***
[2025-12-03 01:16:46] total 622680
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas 296750262 Dec  2 20:37 ATLAS.root_0
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 20:37 start_atlas.sh
[2025-12-03 01:16:46] -rw-r--r--. 2 boincer umatlas    589945 Dec  2 20:37 input.tar.gz
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas 337795991 Dec  3 01:13 HITS.pool.root.1
[2025-12-03 01:16:46] -rw-------. 1 boincer umatlas   2457600 Dec  3 01:16 result.tar.gz
01:16:47 (680665): run_atlas exited; CPU time 65813.881140
01:16:47 (680665): called boinc_finish(0)

</stderr_txt>
]]>

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