Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
23:09:04 (2316659): wrapper (7.7.26015): starting
23:09:04 (2316659): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 23:09:04] Arguments: --nthreads 8
[2025-12-02 23:09:04] Threads: 8
[2025-12-02 23:09:04] Checking for CVMFS
[2025-12-02 23:09:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 23:09:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 23:09:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 23:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 23:09:05] 2.12.7.0 135827 3577 67836 153582 0 80 3775733 4096000 2841 130560 0 7076795 99.829 921327 496 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 23:09:05] CVMFS is ok
[2025-12-02 23:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 23:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 23:09:05] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 23:09:05] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 23:09:05] Further information can be found at the LHC@home message board.
[2025-12-02 23:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 23:09:05] Checking for apptainer binary...
[2025-12-02 23:09:05] apptainer is not installed, using version from CVMFS
[2025-12-02 23:09:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 23:09:05] X570UD
[2025-12-02 23:09:05] apptainer works
[2025-12-02 23:09:05] Set ATHENA_PROC_NUMBER=8
[2025-12-02 23:09:05] Set ATHENA_CORE_NUMBER=8
[2025-12-02 23:09:05] Starting ATLAS job with PandaID=6895372528
[2025-12-02 23:09:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:31:06]  *** The last 200 lines of the pilot log: ***
[2025-12-03 04:31:06] 2025-12-03 11:30:33,659 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 04:31:06] 2025-12-03 11:30:33,661 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4063.86284375
[2025-12-03 04:31:06] 2025-12-03 11:30:33,663 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6895372528/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,664 | INFO     | extracted standard info from prmon json
[2025-12-03 04:31:06] 2025-12-03 11:30:33,664 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 04:31:06] 2025-12-03 11:30:33,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 04:31:06] 2025-12-03 11:30:33,666 | INFO     | fitting pss+swap vs Time
[2025-12-03 04:31:06] 2025-12-03 11:30:33,666 | INFO     | sum of square deviations: 9784492011.022137
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | sum of deviations: 182012604929.94635
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | mean x: 1764751783.579114
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | mean y: 2856178.0221518986
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | intersect: -32825324255.072052
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | chi2: 3.26990492472643
[2025-12-03 04:31:06] 2025-12-03 11:30:33,667 | INFO     | sum of square deviations: 9327356180.990356
[2025-12-03 04:31:06] 2025-12-03 11:30:33,668 | INFO     | sum of deviations: 244288689873.4343
[2025-12-03 04:31:06] 2025-12-03 11:30:33,668 | INFO     | mean x: 1764751631.080386
[2025-12-03 04:31:06] 2025-12-03 11:30:33,668 | INFO     | mean y: 2876862.382636656
[2025-12-03 04:31:06] 2025-12-03 11:30:33,668 | INFO     | intersect: -46216958163.02964
[2025-12-03 04:31:06] 2025-12-03 11:30:33,669 | INFO     | chi2: 1.8223156259280375
[2025-12-03 04:31:06] 2025-12-03 11:30:33,669 | INFO     | current chi2=1.8223156259280375 (change=44.27007304866829 %)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,669 | INFO     | sum of square deviations: 8884685738.457514
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | sum of deviations: 237205931860.15036
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | mean x: 1764751478.5816994
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | mean y: 2874422.633986928
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | intersect: -47112975400.46011
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | chi2: 1.819898672496993
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | current chi2=1.819898672496993 (change=0.13263088987746943 %)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | right removable region: 305
[2025-12-03 04:31:06] 2025-12-03 11:30:33,670 | INFO     | sum of square deviations: 9327360084.147993
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | sum of deviations: 112728752747.27005
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | mean x: 1764751936.0771704
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | mean y: 2879158.488745981
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | intersect: -21325587081.429283
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | chi2: 1.5237772063681538
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | current chi2=1.5237772063681538 (change=53.39995377707694 %)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,671 | INFO     | sum of square deviations: 8884674696.617682
[2025-12-03 04:31:06] 2025-12-03 11:30:33,672 | INFO     | sum of deviations: 101411554051.89214
[2025-12-03 04:31:06] 2025-12-03 11:30:33,672 | INFO     | mean x: 1764752088.5784314
[2025-12-03 04:31:06] 2025-12-03 11:30:33,672 | INFO     | mean y: 2883057.3169934643
[2025-12-03 04:31:06] 2025-12-03 11:30:33,672 | INFO     | intersect: -20140370120.78665
[2025-12-03 04:31:06] 2025-12-03 11:30:33,673 | INFO     | chi2: 1.5146844992829573
[2025-12-03 04:31:06] 2025-12-03 11:30:33,673 | INFO     | current chi2=1.5146844992829573 (change=0.5967215579283078 %)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,673 | INFO     | left removable region: 20
[2025-12-03 04:31:06] 2025-12-03 11:30:33,673 | INFO     | sum of square deviations: 7178141837.978955
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | sum of deviations: 130558986640.87376
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | mean x: 1764752058.0842106
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | mean y: 2912448.505263158
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | intersect: -32095121496.271526
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | chi2: 0.029988679563486675
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | current memory leak: 18.19 B/s (using 285 data points, chi2=0.03)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | could have reported an average CPU frequency of 4071 MHz (14 samples)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | ..............................
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . Timing measurements:
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . get job = 0 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . initial setup = 3 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . payload setup = 3 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . stage-in = 0 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . payload execution = 19247 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . stage-out = 2 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | . log creation = 0 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,674 | INFO     | ..............................
[2025-12-03 04:31:06] 2025-12-03 11:30:33,706 | INFO     | 
[2025-12-03 04:31:06] 2025-12-03 11:30:33,706 | INFO     | job summary report
[2025-12-03 04:31:06] 2025-12-03 11:30:33,706 | INFO     | --------------------------------------------------
[2025-12-03 04:31:06] 2025-12-03 11:30:33,706 | INFO     | PanDA job id: 6895372528
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | task id: 47556137
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | errors: (none)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | pilot state: finished 
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | transexitcode: 0
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | exeerrorcode: 0
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | exeerrordiag: 
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | exitcode: 0
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | exitmsg: OK
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | cpuconsumptiontime: 149394 s
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | nevents: 1000
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | neventsw: 0
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | pid: 2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | pgrp: 2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | corecount: 8
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | event service: False
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | sizes: {0: 2284271, 3: 2284533, 11: 2284561, 19254: 2318572, 19255: 2318571, 19258: 2327663, 19260: 2327847, 19265: 2328093}
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | --------------------------------------------------
[2025-12-03 04:31:06] 2025-12-03 11:30:33,707 | INFO     | 
[2025-12-03 04:31:06] 2025-12-03 11:30:33,708 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-12-03 04:31:06] 2025-12-03 11:30:33,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | job 6895372528 has completed (purged errors)
[2025-12-03 04:31:06] 2025-12-03 11:30:33,724 | INFO     | overall cleanup function is called
[2025-12-03 04:31:06] 2025-12-03 11:30:34,738 | INFO     | --- collectZombieJob: --- 10, [2327155]
[2025-12-03 04:31:06] 2025-12-03 11:30:34,738 | INFO     | zombie collector waiting for pid 2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:34,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 04:31:06] 2025-12-03 11:30:34,738 | INFO     | collected zombie processes
[2025-12-03 04:31:06] 2025-12-03 11:30:34,738 | INFO     | will attempt to kill all subprocesses of pid=2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:34,858 | INFO     | process IDs to be killed: [2327155] (in reverse order)
[2025-12-03 04:31:06] 2025-12-03 11:30:34,908 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 04:31:06] 2025-12-03 11:30:34,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 04:31:06] 2025-12-03 11:30:34,912 | INFO     | did not find any defunct processes belonging to 2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:34,915 | INFO     | did not find any defunct processes belonging to 2327155
[2025-12-03 04:31:06] 2025-12-03 11:30:34,916 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 04:31:06] 2025-12-03 11:30:34,916 | INFO     | ready for new job
[2025-12-03 04:31:06] 2025-12-03 11:30:34,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 04:31:06] 2025-12-03 11:30:34,918 | INFO     | ***************************************
[2025-12-03 04:31:06] 2025-12-03 11:30:34,918 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 04:31:06] 2025-12-03 11:30:34,918 | INFO     | ***************************************
[2025-12-03 04:31:06] 2025-12-03 11:30:34,918 | INFO     | 
[2025-12-03 04:31:06] 2025-12-03 11:30:34,920 | INFO     | architecture information:
[2025-12-03 04:31:06] 2025-12-03 11:30:34,920 | INFO     | executing command: cat /etc/os-release
[2025-12-03 04:31:06] 2025-12-03 11:30:34,931 | INFO     | cat /etc/os-release:
[2025-12-03 04:31:06] NAME="CentOS Linux"
[2025-12-03 04:31:06] VERSION="7 (Core)"
[2025-12-03 04:31:06] ID="centos"
[2025-12-03 04:31:06] ID_LIKE="rhel fedora"
[2025-12-03 04:31:06] VERSION_ID="7"
[2025-12-03 04:31:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 04:31:06] ANSI_COLOR="0;31"
[2025-12-03 04:31:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 04:31:06] HOME_URL="https://www.centos.org/"
[2025-12-03 04:31:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 04:31:06] 
[2025-12-03 04:31:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 04:31:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 04:31:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 04:31:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 04:31:06] 
[2025-12-03 04:31:06] 2025-12-03 11:30:34,932 | INFO     | ***************************************
[2025-12-03 04:31:06] 2025-12-03 11:30:35,434 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | INFO     | sufficient remaining disk space (170901110784 B)
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | INFO     | update_server=False
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:31:06] 2025-12-03 11:30:35,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 04:31:06] 2025-12-03 11:30:35,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 04:31:06] 2025-12-03 11:30:35,468 | INFO     | all data control threads have been joined
[2025-12-03 04:31:06] 2025-12-03 11:30:35,487 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 04:31:06] 2025-12-03 11:30:35,487 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 04:31:06] 2025-12-03 11:30:35,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 04:31:06] 2025-12-03 11:30:35,488 | INFO     | will abort loop
[2025-12-03 04:31:06] 2025-12-03 11:30:36,079 | INFO     | all payload control threads have been joined
[2025-12-03 04:31:06] 2025-12-03 11:30:36,450 | INFO     | [job] queue monitor thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:36,453 | INFO     | [job] retrieve thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:36,473 | INFO     | [data] control thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:36,492 | INFO     | [job] job monitor thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:36,646 | INFO     | [payload] validate_post thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:36,669 | INFO     | all job control threads have been joined
[2025-12-03 04:31:06] 2025-12-03 11:30:37,079 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,081 | INFO     | [job] validate thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,085 | INFO     | [payload] control thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,193 | INFO     | [data] copytool_in thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,273 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,300 | INFO     | [payload] failed_post thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,439 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,454 | INFO     | [data] copytool_out thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:37,674 | INFO     | [job] control thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:39,454 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:46,195 | INFO     | [monitor] cgroup control has ended
[2025-12-03 04:31:06] 2025-12-03 11:30:46,246 | INFO     | job.realtimelogging is not enabled
[2025-12-03 04:31:06] 2025-12-03 11:30:47,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 04:31:06] 2025-12-03 11:30:49,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131692926650176)>', '<ExcThread(monitor, started 131692505306880)>']
[2025-12-03 04:31:06] 2025-12-03 11:30:54,333 | INFO     | all workflow threads have been joined
[2025-12-03 04:31:06] 2025-12-03 11:30:54,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 04:31:06] 2025-12-03 11:30:54,333 | INFO     | traces error code: 0
[2025-12-03 04:31:06] 2025-12-03 11:30:54,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | INFO     | PID=2320494 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | INFO     | .. there are 4 such processes running
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 04:31:06] 2025-12-03 11:31:06,450 | INFO     | [monitor] control thread has ended
[2025-12-03 04:31:06] 2025-12-03 11:31:06,528 [wrapper] ==== pilot stdout END ====
[2025-12-03 04:31:06] 2025-12-03 11:31:06,530 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 04:31:06] 2025-12-03 11:31:06,532 [wrapper] pilotpid: 2320494
[2025-12-03 04:31:06] 2025-12-03 11:31:06,534 [wrapper] Pilot exit status: 0
[2025-12-03 04:31:06] 2025-12-03 11:31:06,541 [wrapper] pandaids: 6895372528
[2025-12-03 04:31:06] 2025-12-03 11:31:06,571 [wrapper] cleanup supervisor_pilot 2495716 2320495
[2025-12-03 04:31:06] 2025-12-03 11:31:06,574 [wrapper] Test setup, not cleaning
[2025-12-03 04:31:06] 2025-12-03 11:31:06,576 [wrapper] apfmon messages muted
[2025-12-03 04:31:06] 2025-12-03 11:31:06,577 [wrapper] ==== wrapper stdout END ====
[2025-12-03 04:31:06] 2025-12-03 11:31:06,579 [wrapper] ==== wrapper stderr END ====
[2025-12-03 04:31:06]  *** Error codes and diagnostics ***
[2025-12-03 04:31:06]     "exeErrorCode": 0,
[2025-12-03 04:31:06]     "exeErrorDiag": "",
[2025-12-03 04:31:06]     "pilotErrorCode": 0,
[2025-12-03 04:31:06]     "pilotErrorDiag": "",
[2025-12-03 04:31:06]  *** Listing of results directory ***
[2025-12-03 04:31:06] total 1298596
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc    576529 Nov 23 14:23 pilot3.tar.gz
[2025-12-03 04:31:06] -rwx------ 1 boinc boinc     36292 Nov 23 14:48 runpilot2-wrapper.sh
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc      5112 Nov 23 14:48 queuedata.json
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc       100 Dec  2 23:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 04:31:06] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 23:09 run_atlas
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc       105 Dec  2 23:09 job.xml
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc      9767 Dec  2 23:09 init_data.xml
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc 409131222 Dec  2 23:09 EVNT.47483658._000905.pool.root.1
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc     15847 Dec  2 23:09 start_atlas.sh
[2025-12-03 04:31:06] drwxrwx--x 2 boinc boinc      4096 Dec  2 23:09 shared
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc    590102 Dec  2 23:09 input.tar.gz
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc         0 Dec  2 23:09 boinc_lockfile
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc      2785 Dec  2 23:09 pandaJob.out
[2025-12-03 04:31:06] -rw------- 1 boinc boinc    985779 Dec  2 23:09 agis_schedconf.cvmfs.json
[2025-12-03 04:31:06] drwx------ 5 boinc boinc      4096 Dec  2 23:09 pilot3
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc       533 Dec  3 04:25 boinc_task_state.xml
[2025-12-03 04:31:06] -rw------- 1 boinc boinc 907929862 Dec  3 04:29 HITS.47556137._008916.pool.root.1
[2025-12-03 04:31:06] -rw------- 1 boinc boinc      1036 Dec  3 04:30 memory_monitor_summary.json
[2025-12-03 04:31:06] -rw------- 1 boinc boinc   1516240 Dec  3 04:30 agis_ddmendpoints.agis.ALL.json
[2025-12-03 04:31:06] -rw------- 1 boinc boinc   1617939 Dec  3 04:30 log.47556137._008916.job.log.tgz.1
[2025-12-03 04:31:06] -rw------- 1 boinc boinc        95 Dec  3 04:30 pilot_heartbeat.json
[2025-12-03 04:31:06] -rw------- 1 boinc boinc      8560 Dec  3 04:30 heartbeat.json
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc      8192 Dec  3 04:31 boinc_mmap_file
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc        29 Dec  3 04:31 wrapper_checkpoint.txt
[2025-12-03 04:31:06] -rw------- 1 boinc boinc       822 Dec  3 04:31 pilotlog.txt
[2025-12-03 04:31:06] -rw------- 1 boinc boinc   2776773 Dec  3 04:31 log.47556137._008916.job.log.1
[2025-12-03 04:31:06] -rw------- 1 boinc boinc       353 Dec  3 04:31 output.list
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc       620 Dec  3 04:31 runtime_log
[2025-12-03 04:31:06] -rw------- 1 boinc boinc   4413440 Dec  3 04:31 result.tar.gz
[2025-12-03 04:31:06] -rw------- 1 boinc boinc       662 Dec  3 04:31 Tx7LDmS7Wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjCLKDmWkPRCn.diag
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc      8915 Dec  3 04:31 runtime_log.err
[2025-12-03 04:31:06] -rw-r--r-- 1 boinc boinc     21502 Dec  3 04:31 stderr.txt
[2025-12-03 04:31:06] HITS file was successfully produced:
[2025-12-03 04:31:06] -rw------- 1 boinc boinc 907929862 Dec  3 04:29 shared/HITS.pool.root.1
[2025-12-03 04:31:06]  *** Contents of shared directory: ***
[2025-12-03 04:31:06] total 1291112
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc 409131222 Dec  2 23:09 ATLAS.root_0
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc     15847 Dec  2 23:09 start_atlas.sh
[2025-12-03 04:31:06] -rw-r--r-- 2 boinc boinc    590102 Dec  2 23:09 input.tar.gz
[2025-12-03 04:31:06] -rw------- 1 boinc boinc 907929862 Dec  3 04:29 HITS.pool.root.1
[2025-12-03 04:31:06] -rw------- 1 boinc boinc   4413440 Dec  3 04:31 result.tar.gz
04:31:07 (2316659): run_atlas exited; CPU time 149295.817186
04:31:07 (2316659): called boinc_finish(0)

</stderr_txt>
]]>

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