Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:56:51 (3272042): wrapper (7.7.26015): starting
20:56:51 (3272042): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 20:56:51] Arguments: --nthreads 8
[2025-12-02 20:56:51] Threads: 8
[2025-12-02 20:56:51] Checking for CVMFS
[2025-12-02 20:56:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 20:56:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 20:56:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 20:56:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 20:56:53] 2.13.3.0 7314 39438 259276 153576 2 760 31566635 40960000 52919 16776704 0 595094542 99.748 380066051 48396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 20:56:53] CVMFS is ok
[2025-12-02 20:56:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 20:56:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 20:56:53] Further information can be found at the LHC@home message board.
[2025-12-02 20:56:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 20:56:53] Checking for apptainer binary...
[2025-12-02 20:56:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 20:56:53] Running /usr/bin/apptainer --version
[2025-12-02 20:56:54] apptainer version 1.4.4-1.el9
[2025-12-02 20:56:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 20:56:55] c8-16-1.aglt2.org
[2025-12-02 20:56:55] apptainer works
[2025-12-02 20:56:55] Set ATHENA_PROC_NUMBER=8
[2025-12-02 20:56:55] Set ATHENA_CORE_NUMBER=8
[2025-12-02 20:56:55] Starting ATLAS job with PandaID=6895330501
[2025-12-02 20:56:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:47:40]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:47:40] 2025-12-03 13:47:05,903 | INFO     | time since job start (42528s) is within the limit (172800.0s)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,445 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 08:47:40] 2025-12-03 13:47:07,456 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.956359375
[2025-12-03 08:47:40] 2025-12-03 13:47:07,475 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895330501/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,475 | INFO     | extracted standard info from prmon json
[2025-12-03 08:47:40] 2025-12-03 13:47:07,475 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:47:40] 2025-12-03 13:47:07,475 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:47:40] 2025-12-03 13:47:07,498 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:47:40] 2025-12-03 13:47:07,499 | INFO     | sum of square deviations: 103646908486.72029
[2025-12-03 08:47:40] 2025-12-03 13:47:07,506 | INFO     | sum of deviations: 1035848931359.5182
[2025-12-03 08:47:40] 2025-12-03 13:47:07,507 | INFO     | mean x: 1764748414.8616714
[2025-12-03 08:47:40] 2025-12-03 13:47:07,507 | INFO     | mean y: 2816451.880403458
[2025-12-03 08:47:40] 2025-12-03 13:47:07,507 | INFO     | intersect: -17634108627.14479
[2025-12-03 08:47:40] 2025-12-03 13:47:07,507 | INFO     | chi2: 16.542051556254584
[2025-12-03 08:47:40] 2025-12-03 13:47:07,508 | INFO     | sum of square deviations: 101423089884.88234
[2025-12-03 08:47:40] 2025-12-03 13:47:07,513 | INFO     | sum of deviations: 1275669551214.308
[2025-12-03 08:47:40] 2025-12-03 13:47:07,513 | INFO     | mean x: 1764748262.371553
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | mean y: 2832902.3933236576
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | intersect: -22193647469.29478
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | chi2: 13.12094607182619
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | current chi2=13.12094607182619 (change=20.681264792303637 %)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | right removable region: 688
[2025-12-03 08:47:40] 2025-12-03 13:47:07,514 | INFO     | sum of square deviations: 101422513434.88242
[2025-12-03 08:47:40] 2025-12-03 13:47:07,520 | INFO     | sum of deviations: 756179291159.374
[2025-12-03 08:47:40] 2025-12-03 13:47:07,520 | INFO     | mean x: 1764748567.371553
[2025-12-03 08:47:40] 2025-12-03 13:47:07,520 | INFO     | mean y: 2835622.6313497825
[2025-12-03 08:47:40] 2025-12-03 13:47:07,520 | INFO     | intersect: -13154660435.739616
[2025-12-03 08:47:40] 2025-12-03 13:47:07,521 | INFO     | chi2: 11.962717571079718
[2025-12-03 08:47:40] 2025-12-03 13:47:07,521 | INFO     | current chi2=11.962717571079718 (change=27.682987020091897 %)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,521 | INFO     | sum of square deviations: 99230165495.4078
[2025-12-03 08:47:40] 2025-12-03 13:47:07,526 | INFO     | sum of deviations: 505838573837.8418
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | mean x: 1764748719.881579
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | mean y: 2853040.590643275
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | intersect: -8993181292.218832
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | chi2: 8.455833588528787
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | current chi2=8.455833588528787 (change=29.31511140101597 %)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,527 | INFO     | sum of square deviations: 97069715067.3549
[2025-12-03 08:47:40] 2025-12-03 13:47:07,533 | INFO     | sum of deviations: 330800042483.07074
[2025-12-03 08:47:40] 2025-12-03 13:47:07,533 | INFO     | mean x: 1764748872.388807
[2025-12-03 08:47:40] 2025-12-03 13:47:07,533 | INFO     | mean y: 2865378.272459499
[2025-12-03 08:47:40] 2025-12-03 13:47:07,533 | INFO     | intersect: -6011152501.0743065
[2025-12-03 08:47:40] 2025-12-03 13:47:07,534 | INFO     | chi2: 6.60547240378403
[2025-12-03 08:47:40] 2025-12-03 13:47:07,534 | INFO     | current chi2=6.60547240378403 (change=21.882658467344523 %)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,534 | INFO     | left removable region: 30
[2025-12-03 08:47:40] 2025-12-03 13:47:07,534 | INFO     | sum of square deviations: 88339235073.38008
[2025-12-03 08:47:40] 2025-12-03 13:47:07,539 | INFO     | sum of deviations: 502964246852.87274
[2025-12-03 08:47:40] 2025-12-03 13:47:07,539 | INFO     | mean x: 1764749146.899696
[2025-12-03 08:47:40] 2025-12-03 13:47:07,539 | INFO     | mean y: 2894888.361702128
[2025-12-03 08:47:40] 2025-12-03 13:47:07,540 | INFO     | intersect: -10044800507.883858
[2025-12-03 08:47:40] 2025-12-03 13:47:07,540 | INFO     | chi2: 2.1446413635340154
[2025-12-03 08:47:40] 2025-12-03 13:47:07,540 | INFO     | current memory leak: 5.69 B/s (using 658 data points, chi2=2.14)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | could have reported an average CPU frequency of 3793 MHz (27 samples)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | ..............................
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . Timing measurements:
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . get job = 0 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . initial setup = 4 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . payload setup = 52 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . stage-in = 0 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . payload execution = 42377 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . stage-out = 3 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | . log creation = 0 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,541 | INFO     | ..............................
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | 
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | job summary report
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | --------------------------------------------------
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | PanDA job id: 6895330501
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | task id: 47556137
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | errors: (none)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | pilot state: finished 
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | transexitcode: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | exeerrorcode: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | exeerrordiag: 
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | exitcode: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | exitmsg: OK
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | cpuconsumptiontime: 137259 s
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | nevents: 1000
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | neventsw: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | pid: 3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | pgrp: 3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | corecount: 8
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | event service: False
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | sizes: {0: 2284138, 1: 2284166, 2: 2284365, 13: 2284365, 23: 2284421, 34: 2284449, 39: 2284867, 45: 2284895, 42433: 2328878, 42438: 2337872, 42439: 2337956, 42451:
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | --------------------------------------------------
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | 
[2025-12-03 08:47:40] 2025-12-03 13:47:07,596 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 08:47:40] 2025-12-03 13:47:07,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,616 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | job 6895330501 has completed (purged errors)
[2025-12-03 08:47:40] 2025-12-03 13:47:07,619 | INFO     | overall cleanup function is called
[2025-12-03 08:47:40] 2025-12-03 13:47:08,634 | INFO     | --- collectZombieJob: --- 10, [3333054]
[2025-12-03 08:47:40] 2025-12-03 13:47:08,634 | INFO     | zombie collector waiting for pid 3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:08,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:47:40] 2025-12-03 13:47:08,634 | INFO     | collected zombie processes
[2025-12-03 08:47:40] 2025-12-03 13:47:08,634 | INFO     | will attempt to kill all subprocesses of pid=3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:09,411 | INFO     | process IDs to be killed: [3333054] (in reverse order)
[2025-12-03 08:47:40] 2025-12-03 13:47:09,623 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:47:40] 2025-12-03 13:47:09,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:47:40] 2025-12-03 13:47:09,653 | INFO     | did not find any defunct processes belonging to 3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:09,681 | INFO     | did not find any defunct processes belonging to 3333054
[2025-12-03 08:47:40] 2025-12-03 13:47:09,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:47:40] 2025-12-03 13:47:09,683 | INFO     | ready for new job
[2025-12-03 08:47:40] 2025-12-03 13:47:09,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:47:40] 2025-12-03 13:47:09,686 | INFO     | ***************************************
[2025-12-03 08:47:40] 2025-12-03 13:47:09,686 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:47:40] 2025-12-03 13:47:09,686 | INFO     | ***************************************
[2025-12-03 08:47:40] 2025-12-03 13:47:09,686 | INFO     | 
[2025-12-03 08:47:40] 2025-12-03 13:47:09,690 | INFO     | architecture information:
[2025-12-03 08:47:40] 2025-12-03 13:47:09,690 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:47:40] 2025-12-03 13:47:09,736 | INFO     | cat /etc/os-release:
[2025-12-03 08:47:40] NAME="CentOS Linux"
[2025-12-03 08:47:40] VERSION="7 (Core)"
[2025-12-03 08:47:40] ID="centos"
[2025-12-03 08:47:40] ID_LIKE="rhel fedora"
[2025-12-03 08:47:40] VERSION_ID="7"
[2025-12-03 08:47:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:47:40] ANSI_COLOR="0;31"
[2025-12-03 08:47:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:47:40] HOME_URL="https://www.centos.org/"
[2025-12-03 08:47:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:47:40] 
[2025-12-03 08:47:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:47:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:47:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:47:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:47:40] 
[2025-12-03 08:47:40] 2025-12-03 13:47:09,736 | INFO     | ***************************************
[2025-12-03 08:47:40] 2025-12-03 13:47:10,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 08:47:40] 2025-12-03 13:47:10,256 | INFO     | sufficient remaining disk space (164470194176 B)
[2025-12-03 08:47:40] 2025-12-03 13:47:10,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:47:40] 2025-12-03 13:47:10,260 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:47:40] 2025-12-03 13:47:10,260 | INFO     | update_server=False
[2025-12-03 08:47:40] 2025-12-03 13:47:10,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:47:40] 2025-12-03 13:47:10,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:47:40] 2025-12-03 13:47:10,471 | INFO     | all job control threads have been joined
[2025-12-03 08:47:40] 2025-12-03 13:47:10,760 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 08:47:40] 2025-12-03 13:47:10,760 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 08:47:40] 2025-12-03 13:47:10,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:47:40] 2025-12-03 13:47:10,761 | INFO     | will abort loop
[2025-12-03 08:47:40] 2025-12-03 13:47:11,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:47:40] 2025-12-03 13:47:11,167 | INFO     | all data control threads have been joined
[2025-12-03 08:47:40] 2025-12-03 13:47:11,266 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,477 | INFO     | [job] control thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,574 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,597 | INFO     | [job] validate thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,711 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,766 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,771 | INFO     | all payload control threads have been joined
[2025-12-03 08:47:40] 2025-12-03 13:47:11,869 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:11,935 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,075 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,173 | INFO     | [data] control thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,326 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:47:40] 2025-12-03 13:47:12,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,766 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:12,777 | INFO     | [payload] control thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:13,612 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:15,056 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:47:40] 2025-12-03 13:47:31,685 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:47:40] 2025-12-03 13:47:33,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698268870464)>', '<ExcThread(monitor, started 139697986701056)>']
[2025-12-03 08:47:40] 2025-12-03 13:47:38,034 | INFO     | all workflow threads have been joined
[2025-12-03 08:47:40] 2025-12-03 13:47:38,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:47:40] 2025-12-03 13:47:38,034 | INFO     | traces error code: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:38,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:47:40] 2025-12-03 13:47:39,824 | INFO     | PID=3289288 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 08:47:40] 2025-12-03 13:47:39,825 | INFO     | .. there are 41 such processes running
[2025-12-03 08:47:40] 2025-12-03 13:47:39,825 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:47:40] 2025-12-03 13:47:39,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:47:40] 2025-12-03 13:47:39,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:47:40] 2025-12-03 13:47:39,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:47:40] 2025-12-03 13:47:39,826 | INFO     | [monitor] control thread has ended
[2025-12-03 08:47:40] 2025-12-03 13:47:39,967 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:47:40] 2025-12-03 13:47:39,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:47:40] 2025-12-03 13:47:39,986 [wrapper] pilotpid: 3289288
[2025-12-03 08:47:40] 2025-12-03 13:47:39,992 [wrapper] Pilot exit status: 0
[2025-12-03 08:47:40] 2025-12-03 13:47:40,046 [wrapper] pandaids: 6895330501
[2025-12-03 08:47:40] 2025-12-03 13:47:40,219 [wrapper] cleanup supervisor_pilot 3814410 3289289
[2025-12-03 08:47:40] 2025-12-03 13:47:40,225 [wrapper] Test setup, not cleaning
[2025-12-03 08:47:40] 2025-12-03 13:47:40,228 [wrapper] apfmon messages muted
[2025-12-03 08:47:40] 2025-12-03 13:47:40,261 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:47:40] 2025-12-03 13:47:40,264 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:47:40]  *** Error codes and diagnostics ***
[2025-12-03 08:47:40]     "exeErrorCode": 0,
[2025-12-03 08:47:40]     "exeErrorDiag": "",
[2025-12-03 08:47:40]     "pilotErrorCode": 0,
[2025-12-03 08:47:40]     "pilotErrorDiag": "",
[2025-12-03 08:47:40]  *** Listing of results directory ***
[2025-12-03 08:47:40] total 1297980
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 16:26 pilot3.tar.gz
[2025-12-03 08:47:40] -rwx------. 1 boincer umatlas     36292 Nov 21 16:32 runpilot2-wrapper.sh
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 16:32 queuedata.json
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas       100 Dec  2 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:47:40] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 20:56 run_atlas
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas       105 Dec  2 20:56 job.xml
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas 409478900 Dec  2 20:56 EVNT.47483658._000143.pool.root.1
[2025-12-03 08:47:40] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 20:56 shared
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 20:56 input.tar.gz
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 20:56 start_atlas.sh
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas         0 Dec  2 20:56 boinc_lockfile
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas      2783 Dec  2 20:56 pandaJob.out
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas        57 Dec  2 20:56 setup.sh.local
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas    989300 Dec  2 20:58 agis_schedconf.cvmfs.json
[2025-12-03 08:47:40] drwx------. 5 boincer umatlas      4096 Dec  2 20:58 pilot3
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas       533 Dec  3 08:33 boinc_task_state.xml
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas 901578827 Dec  3 08:46 HITS.47556137._001421.pool.root.1
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas      1072 Dec  3 08:46 memory_monitor_summary.json
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas   1516240 Dec  3 08:46 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas   1887003 Dec  3 08:46 log.47556137._001421.job.log.tgz.1
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas      8630 Dec  3 08:47 heartbeat.json
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas      7175 Dec  3 08:47 init_data.xml
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 08:47 boinc_mmap_file
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas       823 Dec  3 08:47 pilotlog.txt
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas        95 Dec  3 08:47 pilot_heartbeat.json
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas        29 Dec  3 08:47 wrapper_checkpoint.txt
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas   5189759 Dec  3 08:47 log.47556137._001421.job.log.1
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas       353 Dec  3 08:47 output.list
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas       620 Dec  3 08:47 runtime_log
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas   7096320 Dec  3 08:47 result.tar.gz
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas      9338 Dec  3 08:47 runtime_log.err
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas       665 Dec  3 08:47 C6qNDmZvng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnoHKDmuFNbrm.diag
[2025-12-03 08:47:40] -rw-r--r--. 1 boincer umatlas     21346 Dec  3 08:47 stderr.txt
[2025-12-03 08:47:40] HITS file was successfully produced:
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas 901578827 Dec  3 08:46 shared/HITS.pool.root.1
[2025-12-03 08:47:40]  *** Contents of shared directory: ***
[2025-12-03 08:47:40] total 1287872
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas 409478900 Dec  2 20:56 ATLAS.root_0
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 20:56 input.tar.gz
[2025-12-03 08:47:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 20:56 start_atlas.sh
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas 901578827 Dec  3 08:46 HITS.pool.root.1
[2025-12-03 08:47:40] -rw-------. 1 boincer umatlas   7096320 Dec  3 08:47 result.tar.gz
08:47:42 (3272042): run_atlas exited; CPU time 138066.720652
08:47:42 (3272042): called boinc_finish(0)

</stderr_txt>
]]>

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