Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
11:22:41 (252113): wrapper (7.7.26015): starting
11:22:41 (252113): wrapper: running run_atlas (--nthreads 10)
[2025-12-08 11:22:41] Arguments: --nthreads 10
[2025-12-08 11:22:41] Threads: 10
[2025-12-08 11:22:41] Checking for CVMFS
[2025-12-08 11:22:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-08 11:22:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-08 11:22:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-08 11:22:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-08 11:22:42] 2.13.3.0 11319 3138 77536 153778 2 52 2370366 4096000 12871 130560 0 456241445 100.000 189084 640 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-08 11:22:42] CVMFS is ok
[2025-12-08 11:22:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 11:22:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-08 11:22:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-08 11:22:42] Further information can be found at the LHC@home message board.
[2025-12-08 11:22:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 11:22:42] Checking for apptainer binary...
[2025-12-08 11:22:42] apptainer is not installed, using version from CVMFS
[2025-12-08 11:22:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 11:22:42] 7950x-linux
[2025-12-08 11:22:42] apptainer works
[2025-12-08 11:22:42] Set ATHENA_PROC_NUMBER=10
[2025-12-08 11:22:42] Set ATHENA_CORE_NUMBER=10
[2025-12-08 11:22:42] Starting ATLAS job with PandaID=6895369816
[2025-12-08 11:22:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc534/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 03:37:54]  *** The last 200 lines of the pilot log: ***
[2025-12-09 03:37:54] 2025-12-09 11:37:19,670 | INFO     | monitor loop #4247: job 0:6895369816 is in state 'finished'
[2025-12-09 03:37:54] 2025-12-09 11:37:19,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 03:37:54] 2025-12-09 11:37:20,692 | INFO     | time since job start (58462s) is within the limit (172800.0s)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,533 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-09 03:37:54] 2025-12-09 11:37:21,536 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.990875
[2025-12-09 03:37:54] 2025-12-09 11:37:21,540 | INFO     | using path: /var/lib/multiboinc/boinc534/slots/2/PanDA_Pilot-6895369816/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,540 | INFO     | extracted standard info from prmon json
[2025-12-09 03:37:54] 2025-12-09 11:37:21,540 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 03:37:54] 2025-12-09 11:37:21,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 03:37:54] 2025-12-09 11:37:21,548 | INFO     | fitting pss+swap vs Time
[2025-12-09 03:37:54] 2025-12-09 11:37:21,549 | INFO     | sum of square deviations: 272630523819.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,559 | INFO     | sum of deviations: 1980028762296.4993
[2025-12-09 03:37:54] 2025-12-09 11:37:21,559 | INFO     | mean x: 1765250995.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,559 | INFO     | mean y: 3149437.4018789143
[2025-12-09 03:37:54] 2025-12-09 11:37:21,559 | INFO     | intersect: -12817306961.95794
[2025-12-09 03:37:54] 2025-12-09 11:37:21,560 | INFO     | chi2: 3.8333476307794387
[2025-12-09 03:37:54] 2025-12-09 11:37:21,560 | INFO     | sum of square deviations: 268384016292.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | sum of deviations: 2218277980800.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | mean x: 1765250843.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | mean y: 3157984.1238195174
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | intersect: -14587193295.794264
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | chi2: 2.1223268874118824
[2025-12-09 03:37:54] 2025-12-09 11:37:21,574 | INFO     | current chi2=2.1223268874118824 (change=44.635157261217465 %)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,575 | INFO     | sum of square deviations: 264181835177.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | sum of deviations: 2245206273633.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | mean x: 1765250690.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | mean y: 3158955.4883966246
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | intersect: -14999204557.472477
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | chi2: 1.974027621037941
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | current chi2=1.974027621037941 (change=6.987578928276599 %)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,585 | INFO     | right removable region: 947
[2025-12-09 03:37:54] 2025-12-09 11:37:21,586 | INFO     | sum of square deviations: 268384016292.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,596 | INFO     | sum of deviations: 1737113039096.0005
[2025-12-09 03:37:54] 2025-12-09 11:37:21,596 | INFO     | mean x: 1765251148.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,596 | INFO     | mean y: 3158145.9359916053
[2025-12-09 03:37:54] 2025-12-09 11:37:21,596 | INFO     | intersect: -11422413424.368391
[2025-12-09 03:37:54] 2025-12-09 11:37:21,597 | INFO     | chi2: 2.0391146002129075
[2025-12-09 03:37:54] 2025-12-09 11:37:21,597 | INFO     | current chi2=2.0391146002129075 (change=46.80590448306688 %)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,597 | INFO     | sum of square deviations: 264181835177.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,607 | INFO     | sum of deviations: 1667833007279.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,607 | INFO     | mean x: 1765251300.5
[2025-12-09 03:37:54] 2025-12-09 11:37:21,607 | INFO     | mean y: 3160659.695147679
[2025-12-09 03:37:54] 2025-12-09 11:37:21,607 | INFO     | intersect: -11141225490.641066
[2025-12-09 03:37:54] 2025-12-09 11:37:21,608 | INFO     | chi2: 1.9948189331685016
[2025-12-09 03:37:54] 2025-12-09 11:37:21,608 | INFO     | current chi2=1.9948189331685016 (change=2.1722990478210944 %)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,608 | INFO     | left removable region: 20
[2025-12-09 03:37:54] 2025-12-09 11:37:21,609 | INFO     | sum of square deviations: 247011470448.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,618 | INFO     | sum of deviations: 1831118029532.9995
[2025-12-09 03:37:54] 2025-12-09 11:37:21,618 | INFO     | mean x: 1765251270.0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,618 | INFO     | mean y: 3173928.3203883497
[2025-12-09 03:37:54] 2025-12-09 11:37:21,618 | INFO     | intersect: -13082790951.328773
[2025-12-09 03:37:54] 2025-12-09 11:37:21,619 | INFO     | chi2: 0.11033077672651052
[2025-12-09 03:37:54] 2025-12-09 11:37:21,619 | INFO     | current memory leak: 7.41 B/s (using 927 data points, chi2=0.11)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,619 | INFO     | could have reported an average CPU frequency of 3999 MHz (36 samples)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | ..............................
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . Timing measurements:
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . get job = 0 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . initial setup = 3 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . payload setup = 7 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . stage-in = 0 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . payload execution = 58424 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . stage-out = 3 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | . log creation = 0 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,620 | INFO     | ..............................
[2025-12-09 03:37:54] 2025-12-09 11:37:21,673 | INFO     | 
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | job summary report
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | --------------------------------------------------
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | PanDA job id: 6895369816
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | task id: 47556137
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | errors: (none)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | pilot state: finished 
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | transexitcode: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | exeerrorcode: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | exeerrordiag: 
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | exitcode: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | exitmsg: OK
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | cpuconsumptiontime: 133006 s
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | nevents: 1000
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | neventsw: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | pid: 262660
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | pgrp: 262660
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | corecount: 10
[2025-12-09 03:37:54] 2025-12-09 11:37:21,674 | INFO     | event service: False
[2025-12-09 03:37:54] 2025-12-09 11:37:21,675 | INFO     | sizes: {0: 2284328, 6: 2284590, 11: 2284618, 58435: 2336517, 58440: 2345595, 58447: 2345785}
[2025-12-09 03:37:54] 2025-12-09 11:37:21,675 | INFO     | --------------------------------------------------
[2025-12-09 03:37:54] 2025-12-09 11:37:21,675 | INFO     | 
[2025-12-09 03:37:54] 2025-12-09 11:37:21,675 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc534/slots/2
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,704 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | job 6895369816 has completed (purged errors)
[2025-12-09 03:37:54] 2025-12-09 11:37:21,705 | INFO     | overall cleanup function is called
[2025-12-09 03:37:54] 2025-12-09 11:37:22,722 | INFO     | --- collectZombieJob: --- 10, [262660]
[2025-12-09 03:37:54] 2025-12-09 11:37:22,722 | INFO     | zombie collector waiting for pid 262660
[2025-12-09 03:37:54] 2025-12-09 11:37:22,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 03:37:54] 2025-12-09 11:37:22,722 | INFO     | collected zombie processes
[2025-12-09 03:37:54] 2025-12-09 11:37:22,722 | INFO     | will attempt to kill all subprocesses of pid=262660
[2025-12-09 03:37:54] 2025-12-09 11:37:23,054 | INFO     | process IDs to be killed: [262660] (in reverse order)
[2025-12-09 03:37:54] 2025-12-09 11:37:23,197 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 03:37:54] 2025-12-09 11:37:23,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 03:37:54] 2025-12-09 11:37:23,203 | INFO     | did not find any defunct processes belonging to 262660
[2025-12-09 03:37:54] 2025-12-09 11:37:23,209 | INFO     | did not find any defunct processes belonging to 262660
[2025-12-09 03:37:54] 2025-12-09 11:37:23,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-09 03:37:54] 2025-12-09 11:37:23,210 | INFO     | ready for new job
[2025-12-09 03:37:54] 2025-12-09 11:37:23,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 03:37:54] 2025-12-09 11:37:23,216 | INFO     | ***************************************
[2025-12-09 03:37:54] 2025-12-09 11:37:23,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-09 03:37:54] 2025-12-09 11:37:23,216 | INFO     | ***************************************
[2025-12-09 03:37:54] 2025-12-09 11:37:23,216 | INFO     | 
[2025-12-09 03:37:54] 2025-12-09 11:37:23,217 | INFO     | architecture information:
[2025-12-09 03:37:54] 2025-12-09 11:37:23,217 | INFO     | executing command: cat /etc/os-release
[2025-12-09 03:37:54] 2025-12-09 11:37:23,232 | INFO     | cat /etc/os-release:
[2025-12-09 03:37:54] NAME="CentOS Linux"
[2025-12-09 03:37:54] VERSION="7 (Core)"
[2025-12-09 03:37:54] ID="centos"
[2025-12-09 03:37:54] ID_LIKE="rhel fedora"
[2025-12-09 03:37:54] VERSION_ID="7"
[2025-12-09 03:37:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 03:37:54] ANSI_COLOR="0;31"
[2025-12-09 03:37:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 03:37:54] HOME_URL="https://www.centos.org/"
[2025-12-09 03:37:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 03:37:54] 
[2025-12-09 03:37:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 03:37:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 03:37:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 03:37:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 03:37:54] 
[2025-12-09 03:37:54] 2025-12-09 11:37:23,232 | INFO     | ***************************************
[2025-12-09 03:37:54] 2025-12-09 11:37:23,734 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc534/slots/2
[2025-12-09 03:37:54] 2025-12-09 11:37:23,766 | INFO     | sufficient remaining disk space (178514821120 B)
[2025-12-09 03:37:54] 2025-12-09 11:37:23,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 03:37:54] 2025-12-09 11:37:23,766 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 03:37:54] 2025-12-09 11:37:23,766 | INFO     | update_server=False
[2025-12-09 03:37:54] 2025-12-09 11:37:23,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 03:37:54] 2025-12-09 11:37:23,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 03:37:54] 2025-12-09 11:37:23,767 | INFO     | aborting loop
[2025-12-09 03:37:54] 2025-12-09 11:37:23,986 | INFO     | all payload control threads have been joined
[2025-12-09 03:37:54] 2025-12-09 11:37:24,551 | INFO     | all data control threads have been joined
[2025-12-09 03:37:54] 2025-12-09 11:37:24,640 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 03:37:54] 2025-12-09 11:37:24,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 03:37:54] 2025-12-09 11:37:24,767 | INFO     | all job control threads have been joined
[2025-12-09 03:37:54] 2025-12-09 11:37:24,772 | INFO     | [job] retrieve thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:24,772 | INFO     | [job] job monitor thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:24,991 | INFO     | [payload] control thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,069 | INFO     | [payload] validate_post thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,143 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,181 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,261 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,392 | INFO     | [job] validate thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,556 | INFO     | [data] control thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,568 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:25,772 | INFO     | [job] control thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:26,098 | INFO     | [data] copytool_in thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:26,361 | INFO     | [payload] failed_post thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:26,645 | INFO     | [data] copytool_out thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:26,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 03:37:54] 2025-12-09 11:37:27,692 | INFO     | [job] queue monitor thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:28,694 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 03:37:54] 2025-12-09 11:37:35,528 | INFO     | [monitor] cgroup control has ended
[2025-12-09 03:37:54] 2025-12-09 11:37:35,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134111972230976)>', '<ExcThread(monitor, started 134111335270144)>']
[2025-12-09 03:37:54] 2025-12-09 11:37:40,626 | INFO     | all workflow threads have been joined
[2025-12-09 03:37:54] 2025-12-09 11:37:40,626 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 03:37:54] 2025-12-09 11:37:40,626 | INFO     | traces error code: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:40,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | INFO     | PID=255962 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | INFO     | .. there are 14 such processes running
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 03:37:54] 2025-12-09 11:37:54,084 | INFO     | [monitor] control thread has ended
[2025-12-09 03:37:54] 2025-12-09 11:37:54,180 [wrapper] ==== pilot stdout END ====
[2025-12-09 03:37:54] 2025-12-09 11:37:54,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 03:37:54] 2025-12-09 11:37:54,183 [wrapper] pilotpid: 255962
[2025-12-09 03:37:54] 2025-12-09 11:37:54,190 [wrapper] Pilot exit status: 0
[2025-12-09 03:37:54] 2025-12-09 11:37:54,204 [wrapper] pandaids: 6895369816
[2025-12-09 03:37:54] 2025-12-09 11:37:54,247 [wrapper] cleanup supervisor_pilot 1548544 255963
[2025-12-09 03:37:54] 2025-12-09 11:37:54,253 [wrapper] Test setup, not cleaning
[2025-12-09 03:37:54] 2025-12-09 11:37:54,254 [wrapper] apfmon messages muted
[2025-12-09 03:37:54] 2025-12-09 11:37:54,256 [wrapper] ==== wrapper stdout END ====
[2025-12-09 03:37:54] 2025-12-09 11:37:54,258 [wrapper] ==== wrapper stderr END ====
[2025-12-09 03:37:54]  *** Error codes and diagnostics ***
[2025-12-09 03:37:54]     "exeErrorCode": 0,
[2025-12-09 03:37:54]     "exeErrorDiag": "",
[2025-12-09 03:37:54]     "pilotErrorCode": 0,
[2025-12-09 03:37:54]     "pilotErrorDiag": "",
[2025-12-09 03:37:54]  *** Listing of results directory ***
[2025-12-09 03:37:54] total 1311420
[2025-12-09 03:37:54] -rw-r--r-- 1 root root    576529 Nov 23 12:16 pilot3.tar.gz
[2025-12-09 03:37:54] -rw-r--r-- 1 root root      5112 Nov 23 12:27 queuedata.json
[2025-12-09 03:37:54] -rwx------ 1 4871 1028     36292 Nov 23 12:27 runpilot2-wrapper.sh
[2025-12-09 03:37:54] -rw-r--r-- 1 root root       100 Dec  8 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 03:37:54] -rwxr-xr-x 1 root root      7986 Dec  8 11:22 run_atlas
[2025-12-09 03:37:54] -rw-r--r-- 1 root root       105 Dec  8 11:22 job.xml
[2025-12-09 03:37:54] -rw-r--r-- 2 root root 408854092 Dec  8 11:22 EVNT.47483658._000889.pool.root.1
[2025-12-09 03:37:54] -rw-r--r-- 1 root root      9523 Dec  8 11:22 init_data.xml
[2025-12-09 03:37:54] -rw-r--r-- 2 root root     15847 Dec  8 11:22 start_atlas.sh
[2025-12-09 03:37:54] drwxrwx--x 2 root root      4096 Dec  8 11:22 shared
[2025-12-09 03:37:54] -rw-r--r-- 2 root root    590102 Dec  8 11:22 input.tar.gz
[2025-12-09 03:37:54] -rw-r--r-- 1 root root         0 Dec  8 11:22 boinc_lockfile
[2025-12-09 03:37:54] -rw-r--r-- 1 root root      2785 Dec  8 11:22 pandaJob.out
[2025-12-09 03:37:54] -rw------- 1 root root    981538 Dec  8 11:22 agis_schedconf.cvmfs.json
[2025-12-09 03:37:54] drwxr-xr-x 5  320  320      4096 Dec  8 11:22 pilot3
[2025-12-09 03:37:54] -rw-r--r-- 1 root root       532 Dec  9 03:28 boinc_task_state.xml
[2025-12-09 03:37:54] -rw------- 1 root root 908878123 Dec  9 03:36 HITS.47556137._008759.pool.root.1
[2025-12-09 03:37:54] -rw------- 1 root root        95 Dec  9 03:36 pilot_heartbeat.json
[2025-12-09 03:37:54] -rw------- 1 root root      1050 Dec  9 03:37 memory_monitor_summary.json
[2025-12-09 03:37:54] -rw------- 1 root root   1516240 Dec  9 03:37 agis_ddmendpoints.agis.ALL.json
[2025-12-09 03:37:54] -rw------- 1 root root   2323652 Dec  9 03:37 log.47556137._008759.job.log.tgz.1
[2025-12-09 03:37:54] -rw------- 1 root root      8601 Dec  9 03:37 heartbeat.json
[2025-12-09 03:37:54] -rw-r--r-- 1 root root        29 Dec  9 03:37 wrapper_checkpoint.txt
[2025-12-09 03:37:54] -rw-r--r-- 1 root root      8192 Dec  9 03:37 boinc_mmap_file
[2025-12-09 03:37:54] -rw------- 1 root root       822 Dec  9 03:37 pilotlog.txt
[2025-12-09 03:37:54] -rw------- 1 root root   8302553 Dec  9 03:37 log.47556137._008759.job.log.1
[2025-12-09 03:37:54] -rw------- 1 root root       353 Dec  9 03:37 output.list
[2025-12-09 03:37:54] -rw-r--r-- 1 root root       620 Dec  9 03:37 runtime_log
[2025-12-09 03:37:54] -rw------- 1 root root  10649600 Dec  9 03:37 result.tar.gz
[2025-12-09 03:37:54] -rw-r--r-- 1 root root      9021 Dec  9 03:37 runtime_log.err
[2025-12-09 03:37:54] -rw------- 1 root root       662 Dec  9 03:37 b3NODmlrVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWBLKDmdrDCSo.diag
[2025-12-09 03:37:54] -rw-r--r-- 1 root root     21380 Dec  9 03:37 stderr.txt
[2025-12-09 03:37:54] HITS file was successfully produced:
[2025-12-09 03:37:54] -rw------- 1 root root 908878123 Dec  9 03:36 shared/HITS.pool.root.1
[2025-12-09 03:37:54]  *** Contents of shared directory: ***
[2025-12-09 03:37:54] total 1297856
[2025-12-09 03:37:54] -rw-r--r-- 2 root root 408854092 Dec  8 11:22 ATLAS.root_0
[2025-12-09 03:37:54] -rw-r--r-- 2 root root     15847 Dec  8 11:22 start_atlas.sh
[2025-12-09 03:37:54] -rw-r--r-- 2 root root    590102 Dec  8 11:22 input.tar.gz
[2025-12-09 03:37:54] -rw------- 1 root root 908878123 Dec  9 03:36 HITS.pool.root.1
[2025-12-09 03:37:54] -rw------- 1 root root  10649600 Dec  9 03:37 result.tar.gz
03:37:55 (252113): run_atlas exited; CPU time 133163.595498
03:37:55 (252113): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN