Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:40:11 (10223): wrapper (7.7.26015): starting
04:40:11 (10223): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 04:40:11] Arguments: --nthreads 8
[2025-12-03 04:40:11] Threads: 8
[2025-12-03 04:40:11] Checking for CVMFS
[2025-12-03 04:40:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 04:40:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 04:40:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 04:40:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 04:40:11] 2.11.0.0 3942 75492 92100 153579 2 64 2977730 4096000 1832 130560 3 9639500 99.512 8092918 695 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 04:40:11] CVMFS is ok
[2025-12-03 04:40:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 04:40:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 04:40:11] Further information can be found at the LHC@home message board.
[2025-12-03 04:40:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:40:11] Checking for apptainer binary...
[2025-12-03 04:40:11] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 04:40:11] apptainer is not installed, using version from CVMFS
[2025-12-03 04:40:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:40:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_10947105/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node259
[2025-12-03 04:40:12] apptainer works
[2025-12-03 04:40:12] Set ATHENA_PROC_NUMBER=8
[2025-12-03 04:40:12] Set ATHENA_CORE_NUMBER=8
[2025-12-03 04:40:12] Starting ATLAS job with PandaID=6905164654
[2025-12-03 04:40:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10947105/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:24:45]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:24:45] 2025-12-03 07:23:53,429 | INFO     | monitor loop #976: job 0:6905164654 is in state 'finished'
[2025-12-03 08:24:45] 2025-12-03 07:23:53,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,220 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:24:45] 2025-12-03 07:23:54,237 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2502.82540625
[2025-12-03 08:24:45] 2025-12-03 07:23:54,242 | INFO     | using path: /tmp/job_10947105/atlas/pilot/slots/0/PanDA_Pilot-6905164654/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,242 | INFO     | extracted standard info from prmon json
[2025-12-03 08:24:45] 2025-12-03 07:23:54,242 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:24:45] 2025-12-03 07:23:54,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:24:45] 2025-12-03 07:23:54,245 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:24:45] 2025-12-03 07:23:54,245 | INFO     | sum of square deviations: 3301699115.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | sum of deviations: 1429838388288.5015
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | mean x: 1764739917.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | mean y: 5679398.859090909
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | intersect: -764235031671.0782
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | chi2: 4.572612528349263
[2025-12-03 08:24:45] 2025-12-03 07:23:54,246 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,247 | INFO     | sum of deviations: 1509009258395.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,247 | INFO     | mean x: 1764739765.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,247 | INFO     | mean y: 5733474.009302326
[2025-12-03 08:24:45] 2025-12-03 07:23:54,247 | INFO     | intersect: -864142343358.46
[2025-12-03 08:24:45] 2025-12-03 07:23:54,247 | INFO     | chi2: 2.1134023151518644
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | current chi2=2.1134023151518644 (change=53.78129456521405 %)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | sum of square deviations: 2871616632.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | sum of deviations: 1422632817944.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | mean x: 1764739612.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | mean y: 5670752.395238095
[2025-12-03 08:24:45] 2025-12-03 07:23:54,248 | INFO     | intersect: -874267189856.9535
[2025-12-03 08:24:45] 2025-12-03 07:23:54,249 | INFO     | chi2: 2.133800729388848
[2025-12-03 08:24:45] 2025-12-03 07:23:54,249 | INFO     | current chi2=2.133800729388848 (change=-0.9651931433375824 %)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,249 | INFO     | right removable region: 209
[2025-12-03 08:24:45] 2025-12-03 07:23:54,249 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | sum of deviations: 1300029813028.0002
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | mean x: 1764740070.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | mean y: 5769024.455813954
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | intersect: -744468428641.0358
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | chi2: 3.082158257394356
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | current chi2=3.082158257394356 (change=32.59524531576633 %)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,250 | INFO     | sum of square deviations: 2871616632.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | sum of deviations: 1218938717455.5002
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | mean x: 1764740222.5
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | mean y: 5827900.566666666
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | intersect: -749087960981.534
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | chi2: 3.033309411688376
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | current chi2=3.033309411688376 (change=1.5848908987326475 %)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | left removable region: 20
[2025-12-03 08:24:45] 2025-12-03 07:23:54,251 | INFO     | sum of square deviations: 2093397390.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | sum of deviations: 1059354044201.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | mean x: 1764740192.0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | mean y: 5941580.195767196
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | intersect: -893032651230.5315
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | chi2: 0.1742108418775785
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | current memory leak: 506.05 B/s (using 189 data points, chi2=0.17)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | could have reported an average CPU frequency of 2614 MHz (11 samples)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | ..............................
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | . Timing measurements:
[2025-12-03 08:24:45] 2025-12-03 07:23:54,252 | INFO     | . get job = 0 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . initial setup = 1 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . payload setup = 4 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . stage-in = 0 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . payload execution = 13388 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . stage-out = 1 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | . log creation = 0 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,253 | INFO     | ..............................
[2025-12-03 08:24:45] 2025-12-03 07:23:54,303 | INFO     | 
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | job summary report
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | --------------------------------------------------
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | PanDA job id: 6905164654
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | task id: 47538113
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | errors: (none)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | pilot state: finished 
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | transexitcode: 0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | exeerrorcode: 0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | exeerrordiag: 
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | exitcode: 0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | exitmsg: OK
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | cpuconsumptiontime: 101740 s
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | nevents: 1000
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | neventsw: 0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | pid: 24558
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | pgrp: 24558
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | corecount: 8
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | event service: False
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | sizes: {0: 2284526, 2: 2284788, 11: 2284816, 13396: 2335085, 13397: 2344109, 13400: 2344193, 13404: 2344567}
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | --------------------------------------------------
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | 
[2025-12-03 08:24:45] 2025-12-03 07:23:54,304 | INFO     | executing command: ls -lF /tmp/job_10947105/atlas/pilot/slots/0
[2025-12-03 08:24:45] 2025-12-03 07:23:54,314 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | job 6905164654 has completed (purged errors)
[2025-12-03 08:24:45] 2025-12-03 07:23:54,315 | INFO     | overall cleanup function is called
[2025-12-03 08:24:45] 2025-12-03 07:23:55,323 | INFO     | --- collectZombieJob: --- 10, [24558]
[2025-12-03 08:24:45] 2025-12-03 07:23:55,323 | INFO     | zombie collector waiting for pid 24558
[2025-12-03 08:24:45] 2025-12-03 07:23:55,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:24:45] 2025-12-03 07:23:55,323 | INFO     | collected zombie processes
[2025-12-03 08:24:45] 2025-12-03 07:23:55,323 | INFO     | will attempt to kill all subprocesses of pid=24558
[2025-12-03 08:24:45] 2025-12-03 07:23:55,414 | INFO     | process IDs to be killed: [24558] (in reverse order)
[2025-12-03 08:24:45] 2025-12-03 07:23:55,448 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:24:45] 2025-12-03 07:23:55,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:24:45] 2025-12-03 07:23:55,451 | INFO     | did not find any defunct processes belonging to 24558
[2025-12-03 08:24:45] 2025-12-03 07:23:55,454 | INFO     | did not find any defunct processes belonging to 24558
[2025-12-03 08:24:45] 2025-12-03 07:23:55,455 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:24:45] 2025-12-03 07:23:55,455 | INFO     | ready for new job
[2025-12-03 08:24:45] 2025-12-03 07:23:55,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:24:45] 2025-12-03 07:23:55,456 | INFO     | ***************************************
[2025-12-03 08:24:45] 2025-12-03 07:23:55,456 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:24:45] 2025-12-03 07:23:55,456 | INFO     | ***************************************
[2025-12-03 08:24:45] 2025-12-03 07:23:55,456 | INFO     | 
[2025-12-03 08:24:45] 2025-12-03 07:23:55,469 | INFO     | architecture information:
[2025-12-03 08:24:45] 2025-12-03 07:23:55,470 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:24:45] 2025-12-03 07:23:55,476 | INFO     | cat /etc/os-release:
[2025-12-03 08:24:45] NAME="CentOS Linux"
[2025-12-03 08:24:45] VERSION="7 (Core)"
[2025-12-03 08:24:45] ID="centos"
[2025-12-03 08:24:45] ID_LIKE="rhel fedora"
[2025-12-03 08:24:45] VERSION_ID="7"
[2025-12-03 08:24:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:24:45] ANSI_COLOR="0;31"
[2025-12-03 08:24:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:24:45] HOME_URL="https://www.centos.org/"
[2025-12-03 08:24:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:24:45] 
[2025-12-03 08:24:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:24:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:24:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:24:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:24:45] 
[2025-12-03 08:24:45] 2025-12-03 07:23:55,477 | INFO     | ***************************************
[2025-12-03 08:24:45] 2025-12-03 07:23:55,979 | INFO     | executing command: df -mP /tmp/job_10947105/atlas/pilot/slots/0
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | INFO     | sufficient remaining disk space (224965689344 B)
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | INFO     | update_server=False
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:24:45] 2025-12-03 07:23:55,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:24:45] 2025-12-03 07:23:56,166 | INFO     | all data control threads have been joined
[2025-12-03 08:24:45] 2025-12-03 07:23:56,381 | INFO     | all payload control threads have been joined
[2025-12-03 08:24:45] 2025-12-03 07:23:56,453 | INFO     | all job control threads have been joined
[2025-12-03 08:24:45] 2025-12-03 07:23:56,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:24:45] 2025-12-03 07:23:56,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:24:45] 2025-12-03 07:23:56,937 | INFO     | aborting loop
[2025-12-03 08:24:45] 2025-12-03 07:23:56,991 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:56,991 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,172 | INFO     | [data] control thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,303 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,383 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,387 | INFO     | [payload] control thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,455 | INFO     | [job] control thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,515 | INFO     | [job] validate thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,624 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,942 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:57,991 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:58,168 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:58,225 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:23:58,239 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:24:00,862 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:24:06,677 | INFO     | job.realtimelogging is not enabled
[2025-12-03 08:24:45] 2025-12-03 07:24:07,683 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:24:45] 2025-12-03 07:24:25,819 | INFO     | PID=15111 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:24:45] 2025-12-03 07:24:25,819 | INFO     | .. there are 2 such processes running
[2025-12-03 08:24:45] 2025-12-03 07:24:25,819 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:24:45] 2025-12-03 07:24:25,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:24:45] 2025-12-03 07:24:25,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:24:45] 2025-12-03 07:24:39,086 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:24:45] 2025-12-03 07:24:40,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 08:24:45] 2025-12-03 07:24:40,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:24:45] 2025-12-03 07:24:40,895 | INFO     | [monitor] control thread has ended
[2025-12-03 08:24:45] 2025-12-03 07:24:45,419 | INFO     | all workflow threads have been joined
[2025-12-03 08:24:45] 2025-12-03 07:24:45,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:24:45] 2025-12-03 07:24:45,420 | INFO     | traces error code: 0
[2025-12-03 08:24:45] 2025-12-03 07:24:45,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:24:45] 2025-12-03 07:24:45,486 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:24:45] 2025-12-03 07:24:45,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:24:45] 2025-12-03 07:24:45,489 [wrapper] pilotpid: 15111
[2025-12-03 08:24:45] 2025-12-03 07:24:45,490 [wrapper] Pilot exit status: 0
[2025-12-03 08:24:45] 2025-12-03 07:24:45,495 [wrapper] pandaids: 6905164654
[2025-12-03 08:24:45] 2025-12-03 07:24:45,517 [wrapper] cleanup supervisor_pilot 10984 15112
[2025-12-03 08:24:45] 2025-12-03 07:24:45,518 [wrapper] Test setup, not cleaning
[2025-12-03 08:24:45] 2025-12-03 07:24:45,520 [wrapper] apfmon messages muted
[2025-12-03 08:24:45] 2025-12-03 07:24:45,521 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:24:45] 2025-12-03 07:24:45,522 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:24:45]  *** Error codes and diagnostics ***
[2025-12-03 08:24:45]     "exeErrorCode": 0,
[2025-12-03 08:24:45]     "exeErrorDiag": "",
[2025-12-03 08:24:45]     "pilotErrorCode": 0,
[2025-12-03 08:24:45]     "pilotErrorDiag": "",
[2025-12-03 08:24:45]  *** Listing of results directory ***
[2025-12-03 08:24:45] total 1071552
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:16 queuedata.json
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 08:24:45] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:16 runpilot2-wrapper.sh
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user       100 Dec  3 03:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:24:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 03:03 run_atlas
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user       105 Dec  3 03:03 job.xml
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user 379540059 Dec  3 04:40 EVNT.47528871._000073.pool.root.1
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 04:40 start_atlas.sh
[2025-12-03 08:24:45] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 04:40 shared
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user    590137 Dec  3 04:40 input.tar.gz
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      6389 Dec  3 04:40 init_data.xml
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user         0 Dec  3 04:40 boinc_setup_complete
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      8192 Dec  3 04:40 boinc_mmap_file
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user         0 Dec  3 04:40 boinc_lockfile
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      2879 Dec  3 04:40 pandaJob.out
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user    989300 Dec  3 04:40 agis_schedconf.cvmfs.json
[2025-12-03 08:24:45] drwx------ 5 mf493845 unix-user       440 Dec  3 04:40 pilot3
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user 706651704 Dec  3 08:23 HITS.47538113._002229.pool.root.1
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      1032 Dec  3 08:23 memory_monitor_summary.json
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user   1516240 Dec  3 08:23 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user   1634671 Dec  3 08:23 log.47538113._002229.job.log.tgz.1
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user     27771 Dec  3 08:23 heartbeat.json
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user        95 Dec  3 08:24 pilot_heartbeat.json
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      4907 Dec  3 08:24 pilotlog.txt
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user   1938046 Dec  3 08:24 log.47538113._002229.job.log.1
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user       353 Dec  3 08:24 output.list
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user       620 Dec  3 08:24 runtime_log
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user   3614720 Dec  3 08:24 result.tar.gz
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user      9221 Dec  3 08:24 runtime_log.err
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user       651 Dec  3 08:24 IMzKDmcIkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZxLKDmGidUIn.diag
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user     21670 Dec  3 08:24 stderr.txt
[2025-12-03 08:24:45] HITS file was successfully produced:
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user 706651704 Dec  3 08:23 shared/HITS.pool.root.1
[2025-12-03 08:24:45]  *** Contents of shared directory: ***
[2025-12-03 08:24:45] total 1064868
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user 379540059 Dec  3 04:40 ATLAS.root_0
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 04:40 start_atlas.sh
[2025-12-03 08:24:45] -rw-r--r-- 2 mf493845 unix-user    590137 Dec  3 04:40 input.tar.gz
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user 706651704 Dec  3 08:23 HITS.pool.root.1
[2025-12-03 08:24:45] -rw------- 1 mf493845 unix-user   3614720 Dec  3 08:24 result.tar.gz
08:24:47 (10223): run_atlas exited; CPU time 101847.961672
08:24:47 (10223): called boinc_finish(0)

</stderr_txt>
]]>

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