Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:29:13 (27178): wrapper (7.7.26015): starting
04:29:13 (27178): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 04:29:13] Arguments: --nthreads 8
[2025-12-03 04:29:13] Threads: 8
[2025-12-03 04:29:13] Checking for CVMFS
[2025-12-03 04:29:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 04:29:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 04:29:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 04:29:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 04:29:14] 2.11.0.0 4324 75036 88716 153579 0 87 3400813 4096000 179 130560 5 4657024 99.313 6675983 621 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-03 04:29:14] CVMFS is ok
[2025-12-03 04:29:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 04:29:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 04:29:14] Further information can be found at the LHC@home message board.
[2025-12-03 04:29:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:29:14] Checking for apptainer binary...
[2025-12-03 04:29:14] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-03 04:29:14] apptainer is not installed, using version from CVMFS
[2025-12-03 04:29:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:29:14] WARNING: Environment variable TMPDIR already has value [/tmp/job_10947096/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node291
[2025-12-03 04:29:14] apptainer works
[2025-12-03 04:29:14] Set ATHENA_PROC_NUMBER=8
[2025-12-03 04:29:14] Set ATHENA_CORE_NUMBER=8
[2025-12-03 04:29:14] Starting ATLAS job with PandaID=6905166360
[2025-12-03 04:29:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10947096/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 08:13:47]  *** The last 200 lines of the pilot log: ***
[2025-12-03 08:13:47] 2025-12-03 07:13:02,935 | INFO     | this job has now completed (state=finished)
[2025-12-03 08:13:47] 2025-12-03 07:13:02,935 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-03 08:13:47] 2025-12-03 07:13:02,935 | INFO     | log transfer has been attempted: DONE
[2025-12-03 08:13:47] 2025-12-03 07:13:02,935 | INFO     | job 6905166360 has finished - writing final server update
[2025-12-03 08:13:47] 2025-12-03 07:13:02,935 | INFO     | total number of processed events: 1000 (read)
[2025-12-03 08:13:47] 2025-12-03 07:13:02,936 | INFO     | executing command: lscpu
[2025-12-03 08:13:47] 2025-12-03 07:13:02,967 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-03 08:13:47] 2025-12-03 07:13:03,174 | INFO     | monitor loop #973: job 0:6905166360 is in state 'finished'
[2025-12-03 08:13:47] 2025-12-03 07:13:03,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 08:13:47] 2025-12-03 07:13:03,764 | INFO     | time since job start (13424s) is within the limit (172800.0s)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 08:13:47] 2025-12-03 07:13:04,474 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2886.991859375
[2025-12-03 08:13:47] 2025-12-03 07:13:04,479 | INFO     | using path: /tmp/job_10947096/atlas/pilot/slots/0/PanDA_Pilot-6905166360/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,479 | INFO     | extracted standard info from prmon json
[2025-12-03 08:13:47] 2025-12-03 07:13:04,479 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 08:13:47] 2025-12-03 07:13:04,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 08:13:47] 2025-12-03 07:13:04,482 | INFO     | fitting pss+swap vs Time
[2025-12-03 08:13:47] 2025-12-03 07:13:04,482 | INFO     | sum of square deviations: 3301699115.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | sum of deviations: 936348372489.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | mean x: 1764739258.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | mean y: 4404453.968181818
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | intersect: -500468435441.62054
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | chi2: 6.08651543056777
[2025-12-03 08:13:47] 2025-12-03 07:13:04,483 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | sum of deviations: 949183254420.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | mean x: 1764739106.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | mean y: 4412558.5813953485
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | intersect: -543553934090.5788
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | chi2: 4.905785063758352
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | current chi2=4.905785063758352 (change=19.39911892574099 %)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | right removable region: 214
[2025-12-03 08:13:47] 2025-12-03 07:13:04,484 | INFO     | sum of square deviations: 3081657780.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | sum of deviations: 852180607290.0001
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | mean x: 1764739411.0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | mean y: 4462439.976744186
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | intersect: -488004528284.028
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | chi2: 4.437611369172893
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | current chi2=4.437611369172893 (change=27.09110130755164 %)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,485 | INFO     | sum of square deviations: 2871616632.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | sum of deviations: 814350148077.4999
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | mean x: 1764739563.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | mean y: 4489900.976190476
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | intersect: -500450866357.115
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | chi2: 4.308890857459942
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | current chi2=4.308890857459942 (change=2.900671126974832 %)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,486 | INFO     | left removable region: 20
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | sum of square deviations: 2263977332.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | sum of deviations: 746924525288.9998
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | mean x: 1764739685.5
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | mean y: 4542594.845360825
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | intersect: -582213014501.984
[2025-12-03 08:13:47] 2025-12-03 07:13:04,487 | INFO     | chi2: 2.618806420158166
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | current memory leak: 329.92 B/s (using 194 data points, chi2=2.62)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | could have reported an average CPU frequency of 2817 MHz (11 samples)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | ..............................
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . Timing measurements:
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . get job = 0 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . initial setup = 1 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . payload setup = 4 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . stage-in = 0 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . payload execution = 13398 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . stage-out = 1 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | . log creation = 0 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,488 | INFO     | ..............................
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | 
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | job summary report
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | --------------------------------------------------
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | PanDA job id: 6905166360
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | task id: 47538113
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | errors: (none)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | pilot state: finished 
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | transexitcode: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | exeerrorcode: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | exeerrordiag: 
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | exitcode: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | exitmsg: OK
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | cpuconsumptiontime: 102416 s
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | nevents: 1000
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | neventsw: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | pid: 9208
[2025-12-03 08:13:47] 2025-12-03 07:13:04,537 | INFO     | pgrp: 9208
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | corecount: 8
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | event service: False
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | sizes: {0: 2284526, 2: 2284788, 11: 2284816, 13406: 2334742, 13408: 2343766, 13411: 2343822, 13412: 2344196}
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | --------------------------------------------------
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | 
[2025-12-03 08:13:47] 2025-12-03 07:13:04,538 | INFO     | executing command: ls -lF /tmp/job_10947096/atlas/pilot/slots/0
[2025-12-03 08:13:47] 2025-12-03 07:13:04,547 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | job 6905166360 has completed (purged errors)
[2025-12-03 08:13:47] 2025-12-03 07:13:04,548 | INFO     | overall cleanup function is called
[2025-12-03 08:13:47] 2025-12-03 07:13:05,556 | INFO     | --- collectZombieJob: --- 10, [9208]
[2025-12-03 08:13:47] 2025-12-03 07:13:05,556 | INFO     | zombie collector waiting for pid 9208
[2025-12-03 08:13:47] 2025-12-03 07:13:05,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 08:13:47] 2025-12-03 07:13:05,556 | INFO     | collected zombie processes
[2025-12-03 08:13:47] 2025-12-03 07:13:05,556 | INFO     | will attempt to kill all subprocesses of pid=9208
[2025-12-03 08:13:47] 2025-12-03 07:13:05,669 | INFO     | process IDs to be killed: [9208] (in reverse order)
[2025-12-03 08:13:47] 2025-12-03 07:13:05,710 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 08:13:47] 2025-12-03 07:13:05,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 08:13:47] 2025-12-03 07:13:05,714 | INFO     | did not find any defunct processes belonging to 9208
[2025-12-03 08:13:47] 2025-12-03 07:13:05,717 | INFO     | did not find any defunct processes belonging to 9208
[2025-12-03 08:13:47] 2025-12-03 07:13:05,718 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 08:13:47] 2025-12-03 07:13:05,718 | INFO     | ready for new job
[2025-12-03 08:13:47] 2025-12-03 07:13:05,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 08:13:47] 2025-12-03 07:13:05,719 | INFO     | ***************************************
[2025-12-03 08:13:47] 2025-12-03 07:13:05,719 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 08:13:47] 2025-12-03 07:13:05,719 | INFO     | ***************************************
[2025-12-03 08:13:47] 2025-12-03 07:13:05,719 | INFO     | 
[2025-12-03 08:13:47] 2025-12-03 07:13:05,733 | INFO     | architecture information:
[2025-12-03 08:13:47] 2025-12-03 07:13:05,733 | INFO     | executing command: cat /etc/os-release
[2025-12-03 08:13:47] 2025-12-03 07:13:05,740 | INFO     | cat /etc/os-release:
[2025-12-03 08:13:47] NAME="CentOS Linux"
[2025-12-03 08:13:47] VERSION="7 (Core)"
[2025-12-03 08:13:47] ID="centos"
[2025-12-03 08:13:47] ID_LIKE="rhel fedora"
[2025-12-03 08:13:47] VERSION_ID="7"
[2025-12-03 08:13:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 08:13:47] ANSI_COLOR="0;31"
[2025-12-03 08:13:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 08:13:47] HOME_URL="https://www.centos.org/"
[2025-12-03 08:13:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 08:13:47] 
[2025-12-03 08:13:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 08:13:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 08:13:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 08:13:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 08:13:47] 
[2025-12-03 08:13:47] 2025-12-03 07:13:05,740 | INFO     | ***************************************
[2025-12-03 08:13:47] 2025-12-03 07:13:06,243 | INFO     | executing command: df -mP /tmp/job_10947096/atlas/pilot/slots/0
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | INFO     | sufficient remaining disk space (218438303744 B)
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | INFO     | update_server=False
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 08:13:47] 2025-12-03 07:13:06,251 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:13:47] 2025-12-03 07:13:06,504 | INFO     | all payload control threads have been joined
[2025-12-03 08:13:47] 2025-12-03 07:13:06,507 | INFO     | all job control threads have been joined
[2025-12-03 08:13:47] 2025-12-03 07:13:06,528 | INFO     | all data control threads have been joined
[2025-12-03 08:13:47] 2025-12-03 07:13:06,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 08:13:47] 2025-12-03 07:13:06,682 | INFO     | aborting loop
[2025-12-03 08:13:47] 2025-12-03 07:13:07,256 | INFO     | [job] retrieve thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,257 | INFO     | [job] queue monitor thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,405 | INFO     | [payload] validate_post thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,509 | INFO     | [payload] control thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,512 | INFO     | [job] control thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,533 | INFO     | [data] control thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,687 | INFO     | [job] job monitor thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,714 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,718 | INFO     | [data] copytool_in thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,939 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:07,948 | INFO     | [payload] failed_post thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:08,257 | INFO     | [data] copytool_out thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:08,506 | INFO     | [job] validate thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:08,553 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:08,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:08,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 08:13:47] 2025-12-03 07:13:12,797 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 08:13:47] 2025-12-03 07:13:36,961 | INFO     | PID=31875 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 08:13:47] 2025-12-03 07:13:36,961 | INFO     | .. there are 6 such processes running
[2025-12-03 08:13:47] 2025-12-03 07:13:36,961 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 08:13:47] 2025-12-03 07:13:36,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 08:13:47] 2025-12-03 07:13:36,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 08:13:47] 2025-12-03 07:13:41,242 | INFO     | [monitor] cgroup control has ended
[2025-12-03 08:13:47] 2025-12-03 07:13:42,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-03 08:13:47] 2025-12-03 07:13:42,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 08:13:47] 2025-12-03 07:13:42,992 | INFO     | [monitor] control thread has ended
[2025-12-03 08:13:47] 2025-12-03 07:13:47,198 | INFO     | all workflow threads have been joined
[2025-12-03 08:13:47] 2025-12-03 07:13:47,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 08:13:47] 2025-12-03 07:13:47,198 | INFO     | traces error code: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:47,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 08:13:47] 2025-12-03 07:13:47,256 [wrapper] ==== pilot stdout END ====
[2025-12-03 08:13:47] 2025-12-03 07:13:47,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 08:13:47] 2025-12-03 07:13:47,258 [wrapper] pilotpid: 31875
[2025-12-03 08:13:47] 2025-12-03 07:13:47,260 [wrapper] Pilot exit status: 0
[2025-12-03 08:13:47] 2025-12-03 07:13:47,265 [wrapper] pandaids: 6905166360
[2025-12-03 08:13:47] 2025-12-03 07:13:47,292 [wrapper] cleanup supervisor_pilot  3846 31876
[2025-12-03 08:13:47] 2025-12-03 07:13:47,293 [wrapper] Test setup, not cleaning
[2025-12-03 08:13:47] 2025-12-03 07:13:47,294 [wrapper] apfmon messages muted
[2025-12-03 08:13:47] 2025-12-03 07:13:47,295 [wrapper] ==== wrapper stdout END ====
[2025-12-03 08:13:47] 2025-12-03 07:13:47,296 [wrapper] ==== wrapper stderr END ====
[2025-12-03 08:13:47]  *** Error codes and diagnostics ***
[2025-12-03 08:13:47]     "exeErrorCode": 0,
[2025-12-03 08:13:47]     "exeErrorDiag": "",
[2025-12-03 08:13:47]     "pilotErrorCode": 0,
[2025-12-03 08:13:47]     "pilotErrorDiag": "",
[2025-12-03 08:13:47]  *** Listing of results directory ***
[2025-12-03 08:13:47] total 1061684
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-03 08:13:47] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:23 queuedata.json
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user       100 Dec  3 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 08:13:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  3 02:53 run_atlas
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user       105 Dec  3 02:53 job.xml
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 04:29 start_atlas.sh
[2025-12-03 08:13:47] drwxrwx--x 2 mf493845 unix-user       100 Dec  3 04:29 shared
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user    590140 Dec  3 04:29 input.tar.gz
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      6390 Dec  3 04:29 init_data.xml
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user 374573175 Dec  3 04:29 EVNT.47528871._000059.pool.root.1
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user         0 Dec  3 04:29 boinc_setup_complete
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      8192 Dec  3 04:29 boinc_mmap_file
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user         0 Dec  3 04:29 boinc_lockfile
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      2879 Dec  3 04:29 pandaJob.out
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user    989300 Dec  3 04:29 agis_schedconf.cvmfs.json
[2025-12-03 08:13:47] drwx------ 5 mf493845 unix-user       440 Dec  3 04:29 pilot3
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user 701578721 Dec  3 08:12 HITS.47538113._002310.pool.root.1
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user        95 Dec  3 08:12 pilot_heartbeat.json
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      1025 Dec  3 08:12 memory_monitor_summary.json
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user   1516240 Dec  3 08:12 agis_ddmendpoints.agis.ALL.json
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user   1618415 Dec  3 08:13 log.47538113._002310.job.log.tgz.1
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user     27513 Dec  3 08:13 heartbeat.json
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      4835 Dec  3 08:13 pilotlog.txt
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user   1927208 Dec  3 08:13 log.47538113._002310.job.log.1
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user       353 Dec  3 08:13 output.list
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user       620 Dec  3 08:13 runtime_log
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user   3584000 Dec  3 08:13 result.tar.gz
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user       651 Dec  3 08:13 VD8NDmWKkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQOPKDmYlJ86m.diag
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user      9221 Dec  3 08:13 runtime_log.err
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user     21896 Dec  3 08:13 stderr.txt
[2025-12-03 08:13:47] HITS file was successfully produced:
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user 701578721 Dec  3 08:12 shared/HITS.pool.root.1
[2025-12-03 08:13:47]  *** Contents of shared directory: ***
[2025-12-03 08:13:47] total 1055028
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  3 04:29 start_atlas.sh
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user    590140 Dec  3 04:29 input.tar.gz
[2025-12-03 08:13:47] -rw-r--r-- 2 mf493845 unix-user 374573175 Dec  3 04:29 ATLAS.root_0
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user 701578721 Dec  3 08:12 HITS.pool.root.1
[2025-12-03 08:13:47] -rw------- 1 mf493845 unix-user   3584000 Dec  3 08:13 result.tar.gz
08:13:49 (27178): run_atlas exited; CPU time 102577.850415
08:13:49 (27178): called boinc_finish(0)

</stderr_txt>
]]>

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